Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi2g1v0437900
Transcript ID	LotjaGi2g1v0437900.1
Related isoforms 2	LotjaGi2g1v0437900.2 LotjaGi2g1v0437900.3
Lotus japonicus genome version	Gifu v1.2
Description	V-type proton ATPase subunit E; TAIR: AT4G11150.1 vacuolar ATP synthase subunit E1; Swiss-Prot: sp\|Q9SWE7\|VATE_CITLI V-type proton ATPase subunit E; TrEMBL-Plants: tr\|I3S5S1\|I3S5S1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0437900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:93439860..93447315) extracted from Lotus japonicus Gifu genome v1.2.

GGTGCAAAGCCTAAGGGGTGGGGCACCAAACTCAATTCCCGACTAGTAACACCAAAGGTTAACAGAGTTATATGACGTGG ATTCACTAATCCACTTGTCATTTTTTAAGAGGATAACAGTACCAACAGGACTTATGTAACTGTATCTAAATTTACCCTTT TTCTTTGGGTAAATGGTCACTTTGGTCCTCGAAAGTGTCCACCGACTTCACATTCGTCCCTGAATGAATTTTATTCATCT CACGGTCTCTGAATGTGGCAAACGTCATTCATATTAGTCCTTCCGTTAAAAAAAACTTAACAAACATTAACAGATTCATT TTTTATATTTTTTTAACCTACGTGGAAATCATTTAAATTTTTTTTTAAAAATTAACTAAAAAATGATCAATTAAAAAAAC TCAATTAAAAATTAAAAACAAAATCCTAATCTCCTTCTTCTCATCTTCTTCTTCTTTTTTCTTCATCTTCTTCATCAATC TTTCCATCACCATCAAACCCCATCAAAACTCAATCTTCTCCCTGTTTACAAGGGATGCTAGTCCCAATTAACCATACAAT TGAATCAGGTCCAGCAACTTATCTACATCTGTATTTTGTAGCATCACAACCTCAACACTGCGGACAAGGATAGAAATAAC TACTGCTCATCTTAATTTGGATTCCAAATCTCTGCTAAAGTAGGAGCCATTAAACTATCAATTTTTTTTATTTTGGGTTA CTTTATTTGTTAAATTAGTCCCTGCTCCGTGCCTGTGTTGTGGGAAATGCTTTGATGACCATTACCAAACAAGATAGTAG ACAAAATATATAAAACCAGCCCCTTCTACCTCAACATCTGGAAGGGAGAAAGAAAGGGTTCACGTCCCTTCTGCATTTTT GAATTTCTTTCTTTAAAAATCATTTTCAATTTTTTGAATAATTATCAAACATTTCCAACATATCTGGAATAAATTTCTCA CTTCTCCAACAAATTTCAAAAATCATATCTCGAACACAATTTCTCACTTCTCCAACCTCTCTACGCAAACTAGATCTGGA GGTACCACAGACCAACAGATCTGAAAAAATACTCACTTTTTCAAGATGCAGTGGAAAAATGCAGATATAGAAAAATACTT AGTTTCAGGTGATTTGGCCATGCCTTCTTCTCTACTCTTATTTCTCTTTGTTTTCTCCTATCAACATAATGAACAACCCA GATCGAACCCACCGCCACCGCCCTCATCCCCATCGCAGAAACCTCCCTCCGCCGCAGAAACCCACTTCCACCGCAACCCT AGCCACATCCAAAAACCCAGCTCCATCTCCACCCTAACCCCCGCAGAAACCATTGAGCCATCATCCTCTTCACACACTCT GATCTAGGTTCTGTAGTGGTGAGGAAAAAGGTTTGATTGGAACTTCAAACCAAAAGAGGAAAAGATTGAAGCTTTTCAAT GGGTTTGGAAATCTCTACTCAGATCTGTGGGTTCGGAAATCTCATTAAGGTAGAGAGAAATGGGTTTCGGTGGGGGTGAG GGATGGACTTTGCAGTGGGGGATTGGGTTGTGATGGAAGGATTGGTGAAGATGATGAAGAAGATGAAGAACGATGGTGAT GGCTGGTAGTTAAGATTTTTTGTGTTTTATTTAATTTAGCTTTTAGTTAATTTGTTATTTCAATTTAATTTAATAATTTT TCAGCTTAAAAAAAGGAAATTGGTAACGTCTGTTAAGTTTTTTTTAACGAAAGGACTAATATGAATGACGTTTGCCACAT TTAAGGACTGCGAGATGAATAAAATTCATTCAGGGACGAATGTGAAGTCGGTGGACACTTTCGAGGACCAAAGTGACCAT TTACCCCTTTCTTTTTTTACAGGAAATTACCCCTTTTTCTTTTGCTGTTTACATTGATTTAACAGTTTATACAATCCCCG ATTTTTTGAAAAGGTTAAAAAGATGAGGGTATATTCATTAGGCTATCGTGTGGAAGGTGCATAATAAAAAGGTGGTATCC TGTGATCTCATATTTCTCAATTCTCATCCACACAAACCGCCATCGACGAAGGCCTCGCTCTCATCTCATAATCATATCAC CTCCGCGGAAGCAGTTTCGCTTCCCTTCCTCCTTCCTCGATCTTCTCCGATTCCGAAGCCACCGTCAAAATGAACGACAC AGATGTCTCCCAGCAAATCCAGCAGATGGTCAGGTTCATCCGCCAGGAAGCCGAAGAGAAAGCCAACGAGATCTCTGTCT CCGCCGAAGAAGTACCGTACCACTTTTCACTCCTCTCAATTTTCTTCCACTTCCACTTCTCCATCCCGATCAACCTCTCA ATTTCCTCATTCAAACCGCTTTTTAGTTCAGATCATCATTGATTCTTACATAATCACGTTTGTTTTGGTTGATTCTTCAT CGATTTGATACTTTTTGTTCACTGTTTTCGTGTAGGAATTCAACATCGAGAAGTTGCAGTTGGTTGAAGTCGACAAGAAG AAGATCCGCCAAGAGTACGAGCGCAAGGAGAAGCAAGTTGATGTTCGCAAAAAGATGTAACTACTCTTGCTCACTCTTAT GTCTTCTATATATTTAATTTTTCTTCCACCAGTAAATTCGAAATATTCACATGTCTATTTGATAGTTTTACCATGCGCAA ATAGTTGAGAGTGATGATTTCTCACTGTTATTCTCAATTTTATGCATTCATATAGGTATTGATTAGTGAAGAAAGATTAA CAATGGTTGTTATTACTAGTAAAGCTTGATTTATTGTCCAAGGTTATTGGATCCCTTTGGTACTTTTCGTATAGCGCAAA ACTTAATTAGCCGTATTATTTACAATTCATTTGAAAACTGTTGGGATATGTCATGTATGGTGATTGTTGAATTACTTACA ATCGACGTTATTGCCAAAGTATTATTATGAACTGTTTACAAAACATCATCATGGAGAGTGAATCTACTCTTGCGGTGGGT TGGGTAAATTCAAAACATGAGATCGTGAAAGTTGCTCAATGAGTTGAATCAAATTGATTCATTATTAGGAGAGGTGTGAA TTGCTTGGGAGTTAAACATGCTTATAGGGAAACCAACACTATTGCGGACTATTTAGTTAAGCAAGGTTGCAAAGTTGTCG ATCCTCTATTGTATTGCATATTCTATTGTATAACTAAGGGACCTACTTGAGAAGGATGTTGTCATGCCTTATCTTTAAGA ACTATGATAATATTATGATTTATGATTTATCATTCAAAAAAGTAATATTATTATAAATGGTGAAAATCCTTTTTTTATTT ATTAATAAGTGAATTTGATGGCTCAATGGAGGCTTGATTTGTTTCTTGCAGTCAAATGACTAGTATTTTCATTTTCCTTA CTTGAAAAAATGGTGGTAGTTCTGATAGTTTGAATTTCACGTCACAATTGTATGTTTGCAGTGAGTACTCTATGCAGTTG AATGCTTCTCGGATTAAAGTTCTGCAAGCTCAAGATGATGTGGTTAATAAAATGAAAGAATCTGCAACCAAGGAACTTTT GAATGCGGGCCGTGATCATCATGTGTACAAAAACCTTTTAAAAGATCTCATTGTTCAGGTCAGATAAAGTTTCATGTTGT ACTCTACTCGGAATTTTTCTACGTATCTTGGAAAGATTATTTCTCACATTTTTTATGTTTGAGTAGTAACATGCATGTAG GCAGTCAATATTAGTTGTTATTTTTTTGTTATCATGCCTAATTCTGTATAATTTGTGATTGTGATATTGTATGAAACTAT GGATAACTATTAAGTTCCTGAGAAGTTTTTTGTAAGTATCTGGTAACACAGATGGTATTGTTTCAAATCATAACTAGTTG CTCTCATGGCACTACCCGAAGTCCTGGCCATGGTGCAGTTGATGCCATGGGTCCAGTCCCTTCTCATCTCATCCCATTTT TCTGAAGTCTTGGAATAGAAAATAAGGATTGTATTTGACAATTCACAGCTCCACACAAACGTACAAAAAGAAATAAATAA AGAAAAGACCAGACAAATCTGATCTTGTTTTATGAACTACTTACAATGTGTATGTGTCTTAGAAAATAATATAAGTATTG TATTTGGCAGGGTTTGCTGAGGCTCAAAGAGCCTGCTGTCTTGTTGCGATGCCGGAAAGATGACCTGCAGTTGGTAGAGG CTGTGTTGGATTCTGCTGCAGAGGAGTATGCTGGCAAGGCAAATGTTAATCAGCCAGAGATAATTGTTGACCACAACATC TATCTTCCATCTGCCCCCAGTCATTATGAGTCTCATGAGCCATACTGGTATTGTTAATTTTATAATTTAGTCCTGACTAA CTGACTGTTTTCAGCTACCTGCTAATGCTTAAAAGTTAAAACTATCTACTATGTGGGATTTTGGGGAAGGGGCTAGGAAT TTCTGGCTCTGTTAGTCAGGGCCTCGCTTCTAATTCTTACCCATGCTCTCATGTCTAATAGTATTTACTTTCTAGCCACT CTGATATTGAGGATTCAGTTTCAACATACTTGATTATATATTGTTATTTTTTCAGCTCTGGAGGGGTGGTGTTGGCTTCT CGAGATGGAAAGATTGTGTGTGAAAATACACTTGATGCCCGTTTGGATGTTGTGTTTCGTAAAAAACTTCCAGAGGTAAA TTTTTGCTCTGTAATAGACTTTTTAGTTCACTAGCACCTTGCATTGTCCTGCTCTTTGTTGTTTCATATTTATGCTGCTT AATTTTTTTGTGTTGAGATTTAAACTAGAAAGTTAGTTTTGGTCAAAGTCATTATTCTTCTTTTATAATGGTCAATGTTA TGAAATACAGGACTTTGATATTCAAATAAAATACTTTAGATGTACTATGGCCCCGTTTGGAAACACAACTTAATTAAGCG ATTATCACCATAAGCGCTTATGACATAAGCGCTTATTCATAAGCTATTTTAAATTTTTTATTGAAATGAATTGAAAATAA GTAAGCATAAGCCCTTTTTCATAAGCTATCCTGAATAGCTTATGGAAATAAGCTCAAAACAGCTTATGGTAGGCCATAAG CTGTTTGCATAAGCTCTCCCAAACACTGGCATTAGAGCTTATGCTATCACATAAGCTCAAATAAGCTCTTCCAAACGGGG CCTATTATACACACTGTGAGGGACAACTGGAAAATGCAAATGGAATAAGGGTCTATAAAAGGGACTGGGAGGTATATTAG GATTAAGGTTTGCTGTTGAACAAGGAAAAGAGACGGAGTTCTTCAAACAAAACTCTGAAATGCCTGCGCTTTATTCTTCT TGGGTAATGCCTGCGCTTTATTCCAAACAAGACTTTGTGTATATTTGACAATTCTTCTACAAATAATTCTAAAATTAAAA TCAATTATGGGGAAAAGCTTTTGTGAGTAGCTTTTGAATGCTAGAATTGATTCTAAGAGAAGAGAAGCTGATCCAAACAT GTTAAAAGTATATCAAATATCCTTGTCGCTGATTATGACATACACTACGCATCTCCTTTCTAAATAGAGGCCTGACATTA CCATTATTGGTCAACTTTCTTTATCTTACTGATTTTGTAAACTGCAAAATCTGGTGGACATTTTAGTGTCATTTTTCTCA ACTTAGTTTTGGAACTATTCTGTAAGTATGTGTCAGTAGTGTATTTAGTTGATATTTTAATTTTCAGTAATTTCATCTCA GCAATTATTAATAGCTTAGATCCCACCCCAAAAGAAAAATTGGTTAAGCATGTAGAACGTGACTAAATTATAGGGTTGTT CGTTACTGCAGATCCGCAAGCAGCTCTTTGGACAAGTTGCTGTTTGAAGTCTTTGGTTGTATTGTTTCCTTGCCCCTAGA ATATTTATATTTTTCTGCAGAGATTGTCTATGACCGGAAGATATGTCGTGCCATTGCTCCTGTAATCTCAGTATTGTTAT CCTTTTGTTACTTCAATTTTTTGTGGCATTCGCTTCACATCGTATTTGTTAGGGCATGCGATGTCGTAGAAGTTATAGTT ATAATAAGTGCTCGCTACAATTTGTTGATGTCTTTAGCTTCTTTGGTATTTAAGTGGCAGATATATTGGACATTGCTGTT GCGTTGTGGTAGAACAACAACTGTTATCTTCTGGTGTTCATCGTGCAAATAAATAAAGCTCATGAAGAATTAGTGAAATT TGCTATGGATTAAGCTTAATATATCTCTATTCATCATAAATTTCTTGTAGGTGGGTTAAACTACCGAGATTACATTCTGC ACTTCTTTTTTGCTCTCGCATTTGGTTTGCTGAATCAAATTTTATAGTTCTATATATTATCACATCATTTTACTTTTTTT AATTCAACTATTTTTTTACTCCAATGGATTTCCCAATCTGCCTGTAAATTTGTTTAGCAGCTGTGCATAGGCAGAGCAAC TTGTTATTTAAAGCTTAAAAACTGGGGATTACTTTTAGCACATTAGTGTTTTTCACCCGCCCAACTAAGCTTATCTGTGC AGATAAGTTTTGGGCCTAAAGTGCGTGTGGTGGATCAAGAAAACTGTTCGTTAATACTCTACTAATGATTTGTTGCTTTG GGAAATTTTCGAGTGCTAATTGCTAAAGTGGTAGCTACTGCACTATCTATAATTCTGCCAGTTCTACATTAGAGTTTAAC ACATTCATAACGACTCACAGAAGACGACATGATAATTATTTTACGACATGAAAATTATAGTTATCTACTTAATTTTTGGT GAATTAAACCATCAGCAATATAATAGACACATATCAAACGCACCATTTTCATTTAAACACTTATTTTTATAATATCACAT CATATATATTATATTACCTCTCTATTTTCTTCTTTTATTTATTTGGGTCTCTAAACACCCTAATGGTCCTTTGAATATTT TTCCTTAAAAATGTGGTCTTGTTAGAAATAATAAAATAAAATTATTCATGTGAATCTTACTTAATGAGTTAAACTTTTTT TGGTGAATGGGAAATAATGACTTAAATTTTAGAAATAGTTAATTGATTGACAATTGTGGTTAGCAAGAAAAAATCCTTTT ATGTTGTTAATTAAAAAAAGATAAATGTACATATTTTTTTTCAATTTTGATTCTACTGATTCTTTTCTTACCTCATATCC TTAATAATGTCCCAGTGAAAAATAATAAAAGCAACAGGCTGTGGGATCTGAATTATTCTGAAAGGAGATGAGGGGGTATG CACTATGCAGGGAGGGATTGGACAGATGGATAGACAGGTGAGCAGAAAAGCTGTGATTTGACAAATTGAAATGAGATGGC CATAAGAACTTGCTGCTGCTGCATTTGTACCAGACCTCTCGTTCTCCTTCTTCCCCATTTAGCATCCAGCTTTTTTCCTT TTTTCTTTCTCCCATCATGGTAAGACCTCGATTTCTGTAGTGAACAGAAAGATGAAACAGTATAGTACTAAATTACAGTG AAACAGTGTACTGAGT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0437900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACGACACAGATGTCTCCCAGCAAATCCAGCAGATGGTCAGGTTCATCCGCCAGGAAGCCGAAGAGAAAGCCAACGA GATCTCTGTCTCCGCCGAAGAAGAATTCAACATCGAGAAGTTGCAGTTGGTTGAAGTCGACAAGAAGAAGATCCGCCAAG AGTACGAGCGCAAGGAGAAGCAAGTTGATGTTCGCAAAAAGATTGAGTACTCTATGCAGTTGAATGCTTCTCGGATTAAA GTTCTGCAAGCTCAAGATGATGTGGTTAATAAAATGAAAGAATCTGCAACCAAGGAACTTTTGAATGCGGGCCGTGATCA TCATGTGTACAAAAACCTTTTAAAAGATCTCATTGTTCAGGGTTTGCTGAGGCTCAAAGAGCCTGCTGTCTTGTTGCGAT GCCGGAAAGATGACCTGCAGTTGGTAGAGGCTGTGTTGGATTCTGCTGCAGAGGAGTATGCTGGCAAGGCAAATGTTAAT CAGCCAGAGATAATTGTTGACCACAACATCTATCTTCCATCTGCCCCCAGTCATTATGAGTCTCATGAGCCATACTGCTC TGGAGGGGTGGTGTTGGCTTCTCGAGATGGAAAGATTGTGTGTGAAAATACACTTGATGCCCGTTTGGATGTTGTGTTTC GTAAAAAACTTCCAGAGATCCGCAAGCAGCTCTTTGGACAAGTTGCTGTTTGA

Download CDS Sequence

Protein sequence (LotjaGi2g1v0437900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNDTDVSQQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEVDKKKIRQEYERKEKQVDVRKKIEYSMQLNASRIK VLQAQDDVVNKMKESATKELLNAGRDHHVYKNLLKDLIVQGLLRLKEPAVLLRCRKDDLQLVEAVLDSAAEEYAGKANVN QPEIIVDHNIYLPSAPSHYESHEPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQVAV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR45715 View details on PTHR45715 Search for proteins/transripts with this domain View external data on PTHR45715	1	229	229	2.0E-127	–
PANTHER	PTHR45715:SF11 View details on PTHR45715:SF11 Search for proteins/transripts with this domain View external data on PTHR45715:SF11	1	229	229	2.0E-127	–
Hamap	MF_00311 View details on MF_00311 Search for proteins/transripts with this domain View external data on MF_00311	8	226	219	12.965	IPR002842 Show description in modal box View details on IPR002842 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01991 View details on PF01991 Search for proteins/transripts with this domain View external data on PF01991	16	225	210	2.9E-72	IPR002842 Show description in modal box View details on IPR002842 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	41	61	21	-	–
SUPERFAMILY	SSF160527 View details on SSF160527 Search for proteins/transripts with this domain View external data on SSF160527	87	226	140	1.57E-30	–
Gene3D	G3DSA:3.30.2320.30 View details on G3DSA:3.30.2320.30 Search for proteins/transripts with this domain View external data on G3DSA:3.30.2320.30	91	229	139	4.0E-44	IPR038495 Show description in modal box View details on IPR038495 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0033178 View details of GO:0033178 AmiGO InterPro QuickGO	Cellular component	Proton-transporting two-sector ATPase complex, catalytic domain	A protein complex that forms part of a proton-transporting two-sector ATPase complex and catalyzes ATP hydrolysis or synthesis. The catalytic domain (F1, V1, or A1) comprises a hexameric catalytic core and a central stalk, and is peripherally associated with the membrane when the two-sector ATPase is assembled.	Subterm of View details of GO:0098796 Part of View details of GO:0016469
GO:0046961 View details of GO:0046961 AmiGO InterPro QuickGO	Molecular function	Proton-transporting ATPase activity, rotational mechanism	Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.	Subterm of View details of GO:0015078 View details of GO:0036442 View details of GO:0044769
GO:1902600 View details of GO:1902600 AmiGO InterPro QuickGO	Biological process	Proton transmembrane transport	The directed movement of a proton across a membrane.	Subterm of View details of GO:0015672 View details of GO:0098662

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0437900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi2g1v0437900.1