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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0438000 |
| Transcript ID | LotjaGi2g1v0438000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|A0A1J7HA96|A0A1J7HA96_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0438000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93488099..93492119) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACAAATAATAGAAACCCTAATTTCACCCAATCTCCTTCCCATACCCGGCCGCCGCGCGACCACCGTAGACCACTC TCGCAGCCTCCGGCGCTCCGCCGAAGCTCTCAGGTAATTTTTTCGTTTCTCCACTCTGCGTCCTCTCACCTCTATTTCTC AGTTTCGCATCTCCGAAAGGCTTGTTTCTTCTCCTCTGTTGTTATTTACTTTCTGTTGATTTTTTGTTACTTCTCCTTTT CGTTTCGTACTGTTCCTTCTCCTTTCTCCTGTGTTACTGTTTGCTTAAATTTTTGTTTTCTTTCCCCTTTTTAGTGCTGG TCTCTGTTTTGCAATACACTACATTCTACTGTTTAGACTTTATTTTTCATGTCAATTAAAACATGAAGTCTTGAATTTGT CATGATGTTTTGGTAATTGGTATGTAATATGATCAATGAGAGTATGAGACTTAATATCTATTGAACCCTTGTTATGATTA CTGCAAGCTGCTATGCTACCTGAAGTCTTCTTTCTATTCTGTTTGTGTCGGCAACTATTTGGTATTGTACAATTTATATA CATATCTGTTTTAACATATTGGGTGCACTTTATAATCATCATGAATAGCTTGAACATGTTGGTTTGTTATTTAGATTAAA TTCTACTGTTTAATTGGATGTTTGAAACGTATATTGATAAGGATATTTATTTTATTGGTGATACAGAAAATGGCAGAAAG TTCCCAGCCAAAACAGAGAGGATGCTTGGGATGCAAAGACTATCTTGTGAGCTAGAAAATGATGTGTATATGATTAATAA TTTCTGGTTTAAAATTTGGACGCAATGACACACACCAGCCCAAGTCTTGTTTTAAAATTTGATTTTTCTCCCTGCTTAAA ATATATATTGATAGGATATTAATATAAATGATGATTCAGGAAATGGCAGAAATTTCCCAGTCATTGCCAAAACGGCTGTG CAACCTCCCAAAATCTGTTCTTGCAGAAGTCCTCTCTTTGTTGCCGATCAAGCAAGCAGTATCTACCAGCATTTTGTCCA AGAGATGGGAAACGATATGGACTTCTGTCTCAGTCCTTGACTTTGATGACTCCCTCACGGTGGGCAAAAAGATGTCAGAC AGGGAGCGCAAACTAATGTTCAGGGATTTTGTTTACTCTGTGGTTATTCGCCATCGACCAACGGAAATGAAACGGTTCTC CCTTGTATGCAACTTGAACTATGATGCGGTTGATGTTGCTACGTGGGTGGGCTATGCCCTGGAACACAAGGTGAAAGAGG TGGAGCTTAATATCAAGCTAGAGAGGCTGCCTAGGTGATTATTTAACTGTGATAGCCTTTCTGTCATGAAGCTGAAATTG GTTAGCTTGGTGGCACTTGCCTCATTCTCGGTGTCTCTTCCACAGCTCATGGTTTTACACCTTGGGCAAGTTACATTTAA GCACCACGATCACTTTGTGAAGCTCCTGCTTGGTTGCCCAGTACTTGAGGAGTTAGTGCTGGAAAACGTGATTCTTGATT GCGAATGCCTTCAAAGTAAATTTGAGTTGAATTTGGAGAAATTGTCACGAGCTAGCATTGGGTTCTCATACTATAAAGAA TGCATGAAGGTCTTGTTTTTTCATGCCGTCTCTTGCAATGTTACGAGTTTGTTCATTTCATGGTCTGCGGTATGTTCTCC ACTCAATCCTTAAAAATAAAGATATTAACATGATCTAGCAATTCAACCTGAAATAGCATTATCAAAACAGCTTTTTTCTT AATTGTTACTTTATTGTTTAGTTAGGTAATAATACTTAGGAGTTTATTGATTGCTATATGTTTGTCTTGTTTTCATTATG TAGGATCTATCCTTTGATTCAATTCCAGATGTGTTTATGAATTTAAAACAATTGGAAGTTTCATGGGGAATCTATTATTG GGATCGGTTGATAACATTTCTTCATCATTGCCCCCAACTTGAACAACTTATCATTTGCAAGGTTTGTTTGTTTGGTTGCA AAGTAAAACTTTATTTTATCTGATATTTCACCCTCATTTAAGGGGTTTTGTTTCTGTTATTGCAGGACACACTGACTAGT CCAAAACCACAACATGAATGGAACCCAATTCCTGATACTCCTTTGGAGCATTTGAAATTTTTTTGCATGAAGAATTATGT AGGATCAGACATTGAGCTTGAAATTATAGGTTATGTACTGAAGAATGCAATTATGTTGGAGACTCTCAAAATATATTTTG CTGGCTCCTTACCTTCGAATAAGGTAAGGGACCAAATTGTCAAGAGTTTATCTAAACTTCCAACGACCTCTAAAAACTGC CATGTTCTGCTCCTCGCTTAAAAGGTATGTTCTTTTTTTTGCAATTTTTTGTGCATGTATAATAAAATCATCAGAAGGTT TATGAAACTAAAGACTTTAGTGGTCTGACTTATTTTAAATTTGGAAGCTTTCTTCATTATGTGAGTGTTTGAGGCTTTCT TCAATTTTATCTTCACTCATTCCTTTCCGAAGGAAATAAAAAACGTTTGCTTTCCTGCTGCAGTTTTTTGTGATATTTGA GTGTCTTCAGTGAGTTTAATGTGCACGCATTTTTATTTTTGTTAAATGAATATGTATCTGTGTTTGTCTTGTCCCTCCCA TGTGTCCTGTTACTTCCATTATTCTTGTCAAGGACCCTTGTCCATTTACAATTTCTCAATTTTTCAGTTTAAAATTGTAT TCTACTACTTAGTATTAAAATAAGCCTATGAATTTGACCCACCAGGGATTCTATCTTGCCTCGTACTTTATTTGTAAACC AGACAATTGTGAAATTGTAGATGGACAAGGGTCCTTGAATGTTGGCGGCTGCGTTGAACAAAGTCTGCTTTAACCATTGC TTTGTCTGGAGAAAACAGAATAGGAACCCGATTGGATGTGGACCAAAAAGTAATTATCGGAGCTTATTCAATGCTTTTTC TAGTAAATAAGCTTTCACTAAATGCTCTTCAGTCTGTATCCAAACAGGCTAGTCCGTATCCAAATGGGTTCTTGATAGCA TGGCTGAGGATGTAAAATTTTAAAATCTGTCATACCAGTAGTAAATTAAGCATACTTTTCTTGAATGTGATCAAAATCTT ATTGCTCTGGTTTTTGTACTTTTTTGCTTATCCAATTGTCTCCTTGTTGGTATTTCATGTGTGTGTTTTCAATTTATGTG ATTGACAGGTTTGCGTGCTGCTGCTGCTAATGGAAGATGGAGATATTTGAATGTGTTTTAGATTGGAGAACGAGCAAAAG GATCCTCTCGGAAAAGGTCTAAGCTGCAAACATAAGATGTCAAGTTTCATAGCGTAGTCTTGATTTTAATGATTACTTTA GCCATAGTGATCATGATGCTGTGGTGCGTGGCAAACACATTTTCTTGCTCTTACTTTAGCCATAGTGATCAACTACATGA TTTTCTTTGCATTCTGCACCTGTAGCGGAGCTTTATAATCATAACCAAATTAGCTGAATTAGAGCAATTTTATCGGCTCT GTAGTTCTATATTTCTATGATTTTGTCTCGGTAAAGAATGTTCCTTGAACCAATTATCATCTCAATTTGCGCTTTAGTTC CTTTTAGGTGCAATTTTTCGTACACGGTTAGCTTGTTGAATCTGCATGTTCATCCCTTTGACACTGGGGTGGGGGGGCAA TCTGTTCGACTCATGTTTACTTACAACCTTGTTTGTTTCTCCGTAGTATAATGTTACAAATGTTTTTGTTTGTTCTTAGA ATTTGGTTTGAGCTTTACCATTACCTTAAAGCTAGCTGCTTTGGAGTGGGAATTGTTCCTTCCTTTGTAAAGAAAGATTA TATCTCTAGTTAATATGTGATTGCGCATCACATGAGATGGACTTGATGTCTAGCCTTCCCATTTTCATAACCGTAAAATG TGAATGAGTTTTTGTTTCATTTTTAACCAGTGTATCACTCATTGATAATTAAATATCAATACATTGGTTATTTGAAACAT CTGAAGTATGAGATTGAAAAT
CDS sequence (LotjaGi2g1v0438000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAAGTTCCCAGCCAAAACAGAGAGGATGCTTGGGATGCAAAGACTATCTTGAAATGGCAGAAATTTCCCAGTC ATTGCCAAAACGGCTGTGCAACCTCCCAAAATCTGTTCTTGCAGAAGTCCTCTCTTTGTTGCCGATCAAGCAAGCAGTAT CTACCAGCATTTTGTCCAAGAGATGGGAAACGATATGGACTTCTGTCTCAGTCCTTGACTTTGATGACTCCCTCACGGTG GGCAAAAAGATGTCAGACAGGGAGCGCAAACTAATGTTCAGGGATTTTGTTTACTCTGTGGTTATTCGCCATCGACCAAC GGAAATGAAACGGTTCTCCCTTGTATGCAACTTGAACTATGATGCGGTTGATGTTGCTACGTGGGTGGGCTATGCCCTGG AACACAAGGTGAAAGAGGTGGAGCTTAATATCAAGCTAGAGAGGCTGCCTAGGTGA
Protein sequence (LotjaGi2g1v0438000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESSQPKQRGCLGCKDYLEMAEISQSLPKRLCNLPKSVLAEVLSLLPIKQAVSTSILSKRWETIWTSVSVLDFDDSLTV GKKMSDRERKLMFRDFVYSVVIRHRPTEMKRFSLVCNLNYDAVDVATWVGYALEHKVKEVELNIKLERLPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 143 | 121 | 7.7E-26 | – | |
| PANTHER | 23 | 143 | 121 | 7.7E-26 | – | |
| ProSiteProfiles | 29 | 65 | 37 | 9.497 | ||
| Gene3D | 30 | 143 | 114 | 1.3E-7 | ||
| SUPERFAMILY | 31 | 72 | 42 | 8.63E-9 | ||
| Pfam | 32 | 70 | 39 | 3.2E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0438000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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