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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0439000 |
| Transcript ID | LotjaGi2g1v0439000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SDA1 like; TAIR: AT1G13160.1 ARM repeat superfamily protein; Swiss-Prot: sp|A7S6A5|SDA1_NEMVE Protein SDA1 homolog; TrEMBL-Plants: tr|A0A0B2SJ94|A0A0B2SJ94_GLYSO Protein SDA1 like; Found in the gene: LotjaGi2g1v0439000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:93573771..93580532) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAACTCCTTGGCGCCGCAGCACTTTTCTTTCTTCTCAAGTACATATAAATAGCTCACTCCTTTCTTCATCCCCACAC AGAACAGATTCATCATCATATACCTAATTTACCACCGCCTCTCCACCCTCCAATGTGTCCACCCGAGAAGCTGAGCCTCC CAGGCCCAGCACTCCAATCCAAAATGAAGTGCGACCCTCAAGGCAACGAGTCGGAGCTCCTCCTTCTCCGCAACCAATTC GACTCCTCCCTTTACCTCTTCCTCGAACAAGCCACCCAAAGCTTCACCTCCATCTCCGGCATCGGCACCGACCCCACCGT CGCCAAAGACCTCGCTGATAGAGCCTTGTTCCTCTCCCATGTCACTCCCTTCTACCCTAACCACCTCGCCGATTTCCCGT CCAAACTCATCCAGTTGCTTCATGAAGCCCACCGCACCTTGCCTTCCGGCCTCCGCTGCCACCTCGCCCAGGCCCTCATC CTCCTCGTCAATCGATCGGTCTGCCTCCGTTTGATTCCATTTCCGTTGAATTGTATTGTTTTGTGGTTTTGGTTTTGATG TGGTTTTTTTTTTGTTGCAGATTGTTGATATTGGAGAAACTCTGTCGTTGTTCATGGAGCTTCAAACCCTAGGTGACAAG ACGCTGAAGAAGCTCGCGTTTGATCACGTTATTCACAACATAAAACGCATGAATCTAAAGCATAAGAACGATGCCAAGAA CCGTTCACTTCAGAACATCCTCTTTGTCATGCTACAGGTTTGTGATTTCTGAATTCTGAATGGTTTTTTTCTTTCTTATT TTGAATTCAAACTGTATGAAGCATGAAATAGGCTAATCCATACACATTGTTCTTCTGTGTGAATGGGGTTTGTGTTTTTT GAATAGCGAGAGTGTTAGAATTTTGGGTGTGATAATCCTGGATAACTTCGAAAATCGTGTTTGCACACTTTCCGAACAAA GTATTTCGACCCTATTCTTGCCTGGGTTCACGAAATCCTTGTTGGGATAATTTTGAAGATCAATCTGCTTCTGGCAATAG AGAACAGATCAGAAAGTAGAGAGCGATTTTGGTTTTGTTTTCTGTGTACTTTTTCCTTAGGCTGCAAGCAACCTTATATA GAAGGTTGTGTTTGCACGAATGATCACAATTGTTCCGAAAAGTCACAATTCTTCAAACAATTTCAAACTAGGGTCACAAC TGTTCAGAAAAAATCACCAACAGAGAGAAGGAACAACATGCCATGAGAGCGCTTGTGACTCTGTGTGAGCTTCATAGGAG AAAAGTGTGGTTTGATGAGAGAACAGCAAATGCAATTTGCAATGCTGCGCTCCATCCACAATCGAGGTATATTGTTTTTT GTTGTTGTGAATTTTTTTTAATCTTGGGACTTAAAGATCATGATTTTTGTATTTTTGCCTCTCAGGATCATGATAACGGC TTTACAATTTCTGCTTGATTATGAGAAGATTACAGGCGATGAAGATAGTGATGATTCCGGCAGCGATGAAGAATTGACTG AGTCACCTCAAGTTATCCTCAGCAGGGAGAAAGTTTATAAGGTGAGGTTGAATGATAACCATTTTATTAACGCTGTGTTA TACTTTAAAGCAGTAGCTTTCATATCTATTGTTCCCAAGTCCTAACCTTAGAATTATATATAAGTTGATATGAAACATGT CGGCATTATATTTGGGAGTTTTGAAGAGGGTCGAGTGGATGGGTTCATAATGAACTGGCGTGGAATGGGATAGAGTTGAA AGGTAATTAATAGAGTGAAATGGGTTACAAGTTTAACTGTAACTAGTCTTTATAGACCTTTTATATGAGTTCATAAATAA TTTGAGAAATATCAAAACCTACAATCAAAATTAAGATAAAAAGTGCTAATTTATTATGATAAATTTTTAGATCTGAAGAG AATTCAGAACAAATACAGACCTTTCATTTTTTATATTCAACTCCATGAAAGGCCAGATACACAAATAAAATAGGGTGGTT TATTTACCATTCTTTAACACATTGGTCATTACAATACTTGTAACAGAAACGTGTATATATATATTGAGGTATTTTACATG TCAGCGAGCCAATTTTTTCAAGTGACTTGCACTGATGAAGAGTACAGTAAGAATCTCAGTATTATTCACAAGAAGGAATG TCCTTCTTCACAAAGGGAATTTGCTATTACAAACTCTTGTAACAAGTTCTAGAGAGTCAACATAATCAAATGTCTCAAGT ATCCTCTTACCAGAGTAGTTAACTATTTATACTCTTCCTAATAACCTCCCTCCAAACAAATTGGCCCGTTATTTGACAAT CCTTTGAGGTCCTTTTCTTTTTATTGTGTAAACTATCCACTCATCCCTTTTATTTCTCCTTCGAGGCCTTCTCTTTTCCT TGCGTGAACTAATCACTCACCCCTTTTATTGCTCCTTTCCCTAACATGAACTGAACTAGAATCCAATATATAATGTCACT CAAGAAAAACATCAATTAACAATAATAATTTAGTTACAACCAATCTCACTTCTTAAGCATGGTAAGTGGAAATATGGACA TAAGACAGAGTTCCGTTCAGAACAATTACAGGAAAAATTAGTAAGACAAAAGGTGTTAGGGTTATTATTATAATTCACAT TTAGAAAAAAACAAGTGTTATGTCCTGAATCCCCTCAAACTGGGAGGTACGGAGATTGGGAGGTTTGAGTGTTGAAAGTG GTTTGGGTTTCCTCAACTATTTTGCTATATTTGTAATAAACTTGCCAAACAATGGGTTGAGATAGATCTTTTAAGTTTTA CTGTTCTACTCCATTACTCACGGTTTCCCTCCATCATCCAAACATAGCCTAAAGTAGTTTACTTGCACTCATTCTTGGGA GAATGAAATTTGGAGTATTGGGACATGTTTCAGATAGTTCTTGTTGAGGTTTGCACTCAGTTGTTTATAGTTAATGGTCA TTGGTACAAAATTTCAGGCAAGCCACCAAGGGACAGCAGCTAGCAAAAAGAAAAAGAAGGCAAAACTGGAACGTGTAATA CGCAGCATGAAAAAGCAACAACGCATGTCATCTGAAAAGAGAAATAATAGTTATTATTCCCCACTTAACCATCTTTTAGA TGCCCAGGTTTGTAATTTTTTTTTTTATCATCATCTTAAATACATTTTGGGTTTCAATGTTTATTGAATCAAAATCTCGG TTCCATATGATCTGCAGGGTTTTGCTGAGAAACTATTCTCGTATCTCCAGAATTGTAATGAACGATTTGAGGTGCATACT CTAATTAAAATCTAAACATTCCTGTCATAGTGTAATTTTGTAACTTGAAAATGAAGGCTTGCAATTCCTTTCTATATATC ATCATGGTTATTTAAGATTACGTTTTTTACTGGTTTCTACAATTACCCTCTGAGTTTCAGATCAAGGTGATGATTATGAA CTTGATTGCTCGAACCATTGGACTTCACCAGTTAATTCTGTTAAACTTTTATCCTTTTGTTCAGAAATATATTCAGGTAT ATCATTTGATAAATTGGTAAAATTTGGTATTTTGTATATAACTGAAATGTGACAATGTGCTATATGCATTATGTTATCAG CCACATCAACGCGATGTTACAAGTTTGCTTGCAGCAGTAGTTCAGGCTTGCCATGATATGGTACAGTATGATTGTGACTC TTGTCAGTCAGAATTATTTTATAAATAATAGCTTTTCCTTTTCACAATTTGATGCTTCAGTAGATTTATGTAAAGTAGTC TCTTTGGGTTTTTCTTTGCAACATATCTCATTTAAGGTGTTATTTGGATGCAGGTTCCTCCGGATGCAATTGAGCCCTTG TTCAAACAAATAGTAAATCAATTTGTACATGACCGCTCACCTCCAGAGGTATTCTTTTTGGCTTTATGTTTTGATTTTAT TGATTGAGGCACTCAGCTTTGATTTGTTGATGAGTTTGATTGATATTTTTAGGCTATTACTGTTGGACTAAATGCAGTCA GAGAGATCTGCATGCGCATGCCACTGGTAATCTGCTCGTCCATTGGACATATCTGCATTTTATGTTCCGGTTCCTACTGC TGCTTCTTCATTAATAGGTCATCCATGAGCATCTTCATTAGGAGGCTTGTGGCATGGGCCTTGGAATCGGACCACCTCCT TGCTCAACTTTTTTTACCAATATCCTATGCTTCTGTTTAGTTACTAATCCTTTCCTTTGTGCTATTGATCTTTTGATTTG GGACTGTAGTTAATGAATGAAGACTTACTACAAGACCTTGCATTATATAAGAAGTCACATGAGAAGGCAGTTTCAGTAGC AGCTCGATCTCTGATTGGAGTATTTAGAGAGGTGGGTTAACCCGACTCTTATAAGGTGGTGATTGCTGGTGTGCTAGCAC AGTAGCACTCTCATATTCATTGTCCAAACATCTAATTAGTGTTGTTCCTTTGCAGATTTGCCCTTCTCTACTAGTTAAGA AGGACCGTGGGCGGCCTACCAACCCTACGGCAAGACCAAAGGCCTATGGAGAAGTCAATATTGCGACTGAAGTTCCTGGT GCTGAGCTTTTACATATTGACAGTGATGATGAGCAGGAGAGTGGTGATTCTGATGATTCTGTATGCAGTGGCTCTGATGA TGAGAACCAGCTATGCACTGATAATACTGGAAGTGATGATGATGAAGCTGAAGATAATAGCGTTGTATCAGATGATGAGG AAAGTTCTGATTCTGAAATTGGTGTTAGTGATGATGATGATGATGATGATGATGTTGAGGTTAAGGAGGATGACCTTGAA GACAGTGAACAGTCTGATGAAGAGGTTGGTGAAGTTTCAGAATATGAAGATAATGATGGAAGTGTAGAGGCAAAAAGTAC ATTGAAAGAGACTTCAAAAAAGAGGAAGTTTGCTGATTTTAATGGTACACTTACAGCTGCTGATACAAGTCTTCAGGCTT TGAAGAAATTGACAGGGACGACAACCGGGCAAGCCCTACCAGAATCTGAGGATGGATTTCTTTCTAATGAGGACTTCCAG AGGATAAAGAAGCTAAAGGTTTGATAGTTTCTCATTCAGTGAGCTCAATTTCTAACATTTATAGCTTTTGGTCTGTTAAA TTTGTTCAAGTGATTTATAGGCGAAAAACGAAGCAAGAAATGCTTTGGCTCAGCACGGACTAGCAATTAAGGTTCCAAGT TCTGATCAACTCAGTTTAAAACGAGTAGATGGCGCCGCGCTTGAAGTAAGTAGCTTTAGCTTGTTTAAATTGTTTTGTAG ATGATGTCTCTCTGCAACCCATACCATAAATCAAAACAGAAGCCTTTGATTAAATTATAGATACATTTGTAGATTTGCTT CTCCTAGAATTCATATTATGTCTACCCCAATAGCTAGCTTTGGGGTGGTAATTGCTCTGTGCCCTTCATAAGGATTTATT TAGTCATATCTATTGTAAACGTGAGACTTCAACAGCTTCAAACAATATTTCTTCTTTTACACTTCTGTGTTTGAATTTAC CTATTCATGCATGTACCTTCTAGGTTCATGTAAAGAAAAAGATGAACAAGGAAGAAAGATTGGCTTTGGTTAGAGCAGGC AGGGAGGACAGAGGAAAATATTGTGCTCGAACAGCTGTAAAACAGAAAAAGGTATGTTTGTTGCTCGTTTTTGCAATTCT TTTAAAACTGATAGATAACTTAAACTTCATATCTAGATCTTTCATTGATGTCTTTTTTGCATTAATTGGTGTCTTCTCTT CAAATTAATCATTAAATGTTACATGGTCATCTTGAATTTCTCCCGATGGTGAAGGCCCCAGTTGATTCTCCAAATTCAGT AGTGATATTACATTTGTTATGCATATAAGTATATTACTATATGACTAGTATCGACAAAAAAGACACATTACAAGAACTAC TCTACTCACTTGGCCTAAACATAAGAACTTCTAGGAAATTTTTAATTATCAATGGAAGTTCCCGTGGATTATGTGTATGA GTTTTGATTGTGGGAAGAAAAACCAATGGACGTATTGTTTGTTGTGAACAGACGGGTGGTCTGAGCAACCGACAAAAGGA ACACAAGAAGAAAATGCCCCTGGCTGCAAAGAGATATAAGGTAGCAAAATCTAAAACAGAGAAGAGGAAACAACAACAGC GGGCCGGCAAACAGTTTTGCGGGAGGAAAGCATGGAAACAATGAGCCAATAAATGTGGTGTTGCATTATGAACTGATTAT TTTGCTCTTGGAATGAACCTTTTTGAGCTTCTCATAGAATTTTGATGGTATTAGTTGCTTTTTTTTTGAAAGGATATTAG TTGCTTCTTATTCCTTACTGAATTTAGTTACAGCGTTTAATCCAGACAAACTTTCTTTGTCATTATTGAACCTTAAATTA TTTTCACTTTTATTTTCTTGTTCCTGGTTGCCTTTGTCCGTGGAATCTTCTTCGTCTTTATCAATTTTTCAAACCTTGTC GATTCGACCTTTTCTAATTTCGACAAAATAGTATTTTTTACTGGAACAATATGTTGCCAACACCCAATTAGCCAAATTTG CCCCTTTTTAAATTTTAAAAGATTTTTTTTTATACATCGGAAAGATAAATTGCACCCGTCAGACATAGATCATTGGACCA TCCTCTTCCTAACCCAAATGTCATCAGCTCTTACCACTTGAGTTATGTAAGTTAATTTTAGTTTGACCTCAAATTTCAAT TTAAACTAACCAAGATTAAAAATATATAAAAATGAAAAAAAC
CDS sequence (LotjaGi2g1v0439000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTCCACCCGAGAAGCTGAGCCTCCCAGGCCCAGCACTCCAATCCAAAATGAAGTGCGACCCTCAAGGCAACGAGTC GGAGCTCCTCCTTCTCCGCAACCAATTCGACTCCTCCCTTTACCTCTTCCTCGAACAAGCCACCCAAAGCTTCACCTCCA TCTCCGGCATCGGCACCGACCCCACCGTCGCCAAAGACCTCGCTGATAGAGCCTTGTTCCTCTCCCATGTCACTCCCTTC TACCCTAACCACCTCGCCGATTTCCCGTCCAAACTCATCCAGTTGCTTCATGAAGCCCACCGCACCTTGCCTTCCGGCCT CCGCTGCCACCTCGCCCAGGCCCTCATCCTCCTCGTCAATCGATCGATTGTTGATATTGGAGAAACTCTGTCGTTGTTCA TGGAGCTTCAAACCCTAGGTGACAAGACGCTGAAGAAGCTCGCGTTTGATCACGTTATTCACAACATAAAACGCATGAAT CTAAAGCATAAGAACGATGCCAAGAACCGTTCACTTCAGAACATCCTCTTTGTCATGCTACAGGGTCACAACTGTTCAGA AAAAATCACCAACAGAGAGAAGGAACAACATGCCATGAGAGCGCTTGTGACTCTGTGTGAGCTTCATAGGAGAAAAGTGT GGTTTGATGAGAGAACAGCAAATGCAATTTGCAATGCTGCGCTCCATCCACAATCGAGGATCATGATAACGGCTTTACAA TTTCTGCTTGATTATGAGAAGATTACAGGCGATGAAGATAGTGATGATTCCGGCAGCGATGAAGAATTGACTGAGTCACC TCAAGTTATCCTCAGCAGGGAGAAAGTTTATAAGGCAAGCCACCAAGGGACAGCAGCTAGCAAAAAGAAAAAGAAGGCAA AACTGGAACGTGTAATACGCAGCATGAAAAAGCAACAACGCATGTCATCTGAAAAGAGAAATAATAGTTATTATTCCCCA CTTAACCATCTTTTAGATGCCCAGGGTTTTGCTGAGAAACTATTCTCGTATCTCCAGAATTGTAATGAACGATTTGAGAT CAAGGTGATGATTATGAACTTGATTGCTCGAACCATTGGACTTCACCAGTTAATTCTGTTAAACTTTTATCCTTTTGTTC AGAAATATATTCAGCCACATCAACGCGATGTTACAAGTTTGCTTGCAGCAGTAGTTCAGGCTTGCCATGATATGGTTCCT CCGGATGCAATTGAGCCCTTGTTCAAACAAATAGTAAATCAATTTGTACATGACCGCTCACCTCCAGAGGCTATTACTGT TGGACTAAATGCAGTCAGAGAGATCTGCATGCGCATGCCACTGTTAATGAATGAAGACTTACTACAAGACCTTGCATTAT ATAAGAAGTCACATGAGAAGGCAGTTTCAGTAGCAGCTCGATCTCTGATTGGAGTATTTAGAGAGATTTGCCCTTCTCTA CTAGTTAAGAAGGACCGTGGGCGGCCTACCAACCCTACGGCAAGACCAAAGGCCTATGGAGAAGTCAATATTGCGACTGA AGTTCCTGGTGCTGAGCTTTTACATATTGACAGTGATGATGAGCAGGAGAGTGGTGATTCTGATGATTCTGTATGCAGTG GCTCTGATGATGAGAACCAGCTATGCACTGATAATACTGGAAGTGATGATGATGAAGCTGAAGATAATAGCGTTGTATCA GATGATGAGGAAAGTTCTGATTCTGAAATTGGTGTTAGTGATGATGATGATGATGATGATGATGTTGAGGTTAAGGAGGA TGACCTTGAAGACAGTGAACAGTCTGATGAAGAGGTTGGTGAAGTTTCAGAATATGAAGATAATGATGGAAGTGTAGAGG CAAAAAGTACATTGAAAGAGACTTCAAAAAAGAGGAAGTTTGCTGATTTTAATGGTACACTTACAGCTGCTGATACAAGT CTTCAGGCTTTGAAGAAATTGACAGGGACGACAACCGGGCAAGCCCTACCAGAATCTGAGGATGGATTTCTTTCTAATGA GGACTTCCAGAGGATAAAGAAGCTAAAGGCGAAAAACGAAGCAAGAAATGCTTTGGCTCAGCACGGACTAGCAATTAAGG TTCCAAGTTCTGATCAACTCAGTTTAAAACGAGTAGATGGCGCCGCGCTTGAAGTTCATGTAAAGAAAAAGATGAACAAG GAAGAAAGATTGGCTTTGGTTAGAGCAGGCAGGGAGGACAGAGGAAAATATTGTGCTCGAACAGCTGTAAAACAGAAAAA GACGGGTGGTCTGAGCAACCGACAAAAGGAACACAAGAAGAAAATGCCCCTGGCTGCAAAGAGATATAAGGTAGCAAAAT CTAAAACAGAGAAGAGGAAACAACAACAGCGGGCCGGCAAACAGTTTTGCGGGAGGAAAGCATGGAAACAATGA
Protein sequence (LotjaGi2g1v0439000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCPPEKLSLPGPALQSKMKCDPQGNESELLLLRNQFDSSLYLFLEQATQSFTSISGIGTDPTVAKDLADRALFLSHVTPF YPNHLADFPSKLIQLLHEAHRTLPSGLRCHLAQALILLVNRSIVDIGETLSLFMELQTLGDKTLKKLAFDHVIHNIKRMN LKHKNDAKNRSLQNILFVMLQGHNCSEKITNREKEQHAMRALVTLCELHRRKVWFDERTANAICNAALHPQSRIMITALQ FLLDYEKITGDEDSDDSGSDEELTESPQVILSREKVYKASHQGTAASKKKKKAKLERVIRSMKKQQRMSSEKRNNSYYSP LNHLLDAQGFAEKLFSYLQNCNERFEIKVMIMNLIARTIGLHQLILLNFYPFVQKYIQPHQRDVTSLLAAVVQACHDMVP PDAIEPLFKQIVNQFVHDRSPPEAITVGLNAVREICMRMPLLMNEDLLQDLALYKKSHEKAVSVAARSLIGVFREICPSL LVKKDRGRPTNPTARPKAYGEVNIATEVPGAELLHIDSDDEQESGDSDDSVCSGSDDENQLCTDNTGSDDDEAEDNSVVS DDEESSDSEIGVSDDDDDDDDVEVKEDDLEDSEQSDEEVGEVSEYEDNDGSVEAKSTLKETSKKRKFADFNGTLTAADTS LQALKKLTGTTTGQALPESEDGFLSNEDFQRIKKLKAKNEARNALAQHGLAIKVPSSDQLSLKRVDGAALEVHVKKKMNK EERLALVRAGREDRGKYCARTAVKQKKTGGLSNRQKEHKKKMPLAAKRYKVAKSKTEKRKQQQRAGKQFCGRKAWKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 788 | 777 | 1.7E-265 | ||
| PANTHER | 12 | 788 | 777 | 1.7E-265 | – | |
| SUPERFAMILY | 71 | 480 | 410 | 2.78E-7 | ||
| Pfam | 73 | 124 | 52 | 7.6E-18 | ||
| Coils | 285 | 305 | 21 | - | – | |
| Pfam | 443 | 793 | 351 | 1.6E-70 | ||
| MobiDBLite | 484 | 503 | 20 | - | – | |
| MobiDBLite | 519 | 618 | 100 | - | – | |
| MobiDBLite | 543 | 607 | 65 | - | – | |
| MobiDBLite | 744 | 797 | 54 | - | – | |
| MobiDBLite | 760 | 775 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosomal large subunit export from nucleus | The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm. | ||
| Biological process | Actin cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. | ||
| Biological process | Ribosomal large subunit biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi2g1v0439000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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