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LotjaGi2g1v0439300.1

Overview

Field Value
Gene ID LotjaGi2g1v0439300
Transcript ID LotjaGi2g1v0439300.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor, putative; TAIR: AT4G27950.1 cytokinin response factor 4; Swiss-Prot: sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4; TrEMBL-Plants: tr|A0A0U1T7L0|A0A0U1T7L0_LOTCO AP2/ERF; Found in the gene: LotjaGi2g1v0439300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:93609747..93611791) extracted from Lotus japonicus Gifu genome v1.2.

GATTAAAGTAATTTTTAAACATTATGTAGCGAATAGGTCTGTTGGGATCCTATAAATTAGGTAGGTTGGTAGTACTTGTT CTTGTTCTCTACTTGAGCTTCACTAGCATCTCTTGACCTTCACCATTTTTTCTTTCCTTTTAAGCAGTACAGCACTCTCT GTAAATTTTCTGAAATCTTCAGGGTTTCCGTTACAGATTTCACATTTCACAGCTATACAAAGAAAGTACGGTGATTTCTC AGAGCACAGCACAGAGGAAGATTGTTTCTTTTCCGGAAAAGACACTGTTATTCAAAACAGTGTTTTTATACTTTTGCCCC CACAATTTCCACAGGCCACACCTCTTCATATCATATCATATCCCTTCACTTTTATTTTTCGTACCTTCTGTCTCCTCCTC TTGCTTCACTCAACTTGTATGTGCTCTCAAGCTTGTTTTTCTCTCCTTCTTTTCATGAGTTTTCTTTCTCTCCTTTTTAA CTCACTCCACACTTTCCTTGAAATTACTCCTCCTTTAACACTTTCTCAACCTTATGTATTCAATCTATAAATTCTCTTCC TCTACCACTCTCTCCCTTTGCTTTCTTTCTCCCTAACCTTCTTTATTCTCTCTTCCCTTTCTGTCCCAAGAAGAATATCT CTCTTTCTTTCTTACTTTTCCTCTCTATTTCACTCCCTCACTTCCACTCACTCCACCGTTCTGTTCTGTTTTCCCTCTTT CAACCAAGAATCTGATACATACATACATACACAGAGCTGCAATTTCCACCTTCAAACATGACTGAGAAGAAGTACACTCA CCGCCTCTACCAAACCGACTCACCTAAGCAACCGTTTCCTAGAGTGGTCCGAATAAGTGTCGCCGACACCGATGCCACCG ACTCCTCCAGTGACGAAGAAGAACAAACCATCCCCTGTTCTACGCGCCGCCACCGACAGAGAAGGGTTGTTAACGAGATT ATCATTGAGCCGTGCGCCGCCCAGAATGACGGCGACGGTGTCGTTTCCAGGAAACGAAGCAGGGCTACTAAGGCCAGAGC TCCGGCGAGCCGGCGGGTTTCCTCCTCCTCCGACGGGAAGAAGTTCCGGGGAGTGAGGCAGAGGCCGTGGGGAAAATGGG CGGCGGAGATAAGAGACCCGGCGCGGCGCGTGCGGTTGTGGCTTGGCACCTTCAACACTGCTGAAGAAGCTGCCATGGTG TACGACCACGCTGCCATCAAGATTCGTGGACCTGAAGCGCTGACCAATTTCTTAAAGCCACCCACCACGTGGCCGGAGAA TGAAGAAAAACCCATGAGCTCCTCCGGTTACAGTTCCGGACAAGAAGAATCTCATCACAGCAAGAGTAATCTGTTTTCTC CCATTTCTGTACTTCAGTGCAGTTCTTTATCTGAAGAAGGTGAATCTGTTACTGTGAAAGAAGAAGAAAACTCTAGCTTT TCAGAGAATTTGAGTACTGAAAAGATTGCATTGCCAACAACAGAGAAGATGGAAGAATCTGAATCACTGTTTCCAATTCC AAATGATGTGATGCAATTTGACGTCCAGTTTCAAGATGTTTTGTACGGAAACAACAGCTTCAATGATGTGTTGCCAGAAA GAAGCATGTTTTTCGAAGATGATGGTGGTTGCTGCAGCTCGAGTACAAATTTGTTTGAGGATTTGGAATTCGGATTCAAT AGTTGGAATAATACTACTACGATGAATAGCAACCGTGACTTTTTCCAAGATATTGATGATTTGTTTGTTTCAGATCCGCT TCTTGTTCTTTGATTTGATTTGATGGGTTTATTAGCAGTTAACAAGAATGGATGGATGGATATTATGGCTTGTCGTTGTG TTGCCTCTTTACCGGCAAATTTTGTATCGACAGCAAATTAGTATAATGACTGTAATCAGTTTAATTACTAATCTCTTTTT GTTTGTGGTACTTGGTGTACTCAAGTAGTAGTGACTATTATGGTTTAAGGAATGAATGGATGAGACTTTTTGTTTTTTGT AATATTTATCTTAGTTTTATTGCTTGTACATGTATGGAGTTTGAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0439300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTGAGAAGAAGTACACTCACCGCCTCTACCAAACCGACTCACCTAAGCAACCGTTTCCTAGAGTGGTCCGAATAAG TGTCGCCGACACCGATGCCACCGACTCCTCCAGTGACGAAGAAGAACAAACCATCCCCTGTTCTACGCGCCGCCACCGAC AGAGAAGGGTTGTTAACGAGATTATCATTGAGCCGTGCGCCGCCCAGAATGACGGCGACGGTGTCGTTTCCAGGAAACGA AGCAGGGCTACTAAGGCCAGAGCTCCGGCGAGCCGGCGGGTTTCCTCCTCCTCCGACGGGAAGAAGTTCCGGGGAGTGAG GCAGAGGCCGTGGGGAAAATGGGCGGCGGAGATAAGAGACCCGGCGCGGCGCGTGCGGTTGTGGCTTGGCACCTTCAACA CTGCTGAAGAAGCTGCCATGGTGTACGACCACGCTGCCATCAAGATTCGTGGACCTGAAGCGCTGACCAATTTCTTAAAG CCACCCACCACGTGGCCGGAGAATGAAGAAAAACCCATGAGCTCCTCCGGTTACAGTTCCGGACAAGAAGAATCTCATCA CAGCAAGAGTAATCTGTTTTCTCCCATTTCTGTACTTCAGTGCAGTTCTTTATCTGAAGAAGGTGAATCTGTTACTGTGA AAGAAGAAGAAAACTCTAGCTTTTCAGAGAATTTGAGTACTGAAAAGATTGCATTGCCAACAACAGAGAAGATGGAAGAA TCTGAATCACTGTTTCCAATTCCAAATGATGTGATGCAATTTGACGTCCAGTTTCAAGATGTTTTGTACGGAAACAACAG CTTCAATGATGTGTTGCCAGAAAGAAGCATGTTTTTCGAAGATGATGGTGGTTGCTGCAGCTCGAGTACAAATTTGTTTG AGGATTTGGAATTCGGATTCAATAGTTGGAATAATACTACTACGATGAATAGCAACCGTGACTTTTTCCAAGATATTGAT GATTTGTTTGTTTCAGATCCGCTTCTTGTTCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0439300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTEKKYTHRLYQTDSPKQPFPRVVRISVADTDATDSSSDEEEQTIPCSTRRHRQRRVVNEIIIEPCAAQNDGDGVVSRKR SRATKARAPASRRVSSSSDGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFNTAEEAAMVYDHAAIKIRGPEALTNFLK PPTTWPENEEKPMSSSGYSSGQEESHHSKSNLFSPISVLQCSSLSEEGESVTVKEEENSSFSENLSTEKIALPTTEKMEE SESLFPIPNDVMQFDVQFQDVLYGNNSFNDVLPERSMFFEDDGGCCSSSTNLFEDLEFGFNSWNNTTTMNSNRDFFQDID DLFVSDPLLVL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 51 51 - –
PANTHER
PTHR31194:SF92
11 329 319 6.0E-82 –
PANTHER
PTHR31194
11 329 319 6.0E-82 –
MobiDBLite
mobidb-lite
71 106 36 - –
CDD
cd00018
101 158 58 7.84979E-34
IPR001471
Gene3D
G3DSA:3.30.730.10
101 160 60 7.0E-30
IPR036955
Pfam
PF00847
102 151 50 2.0E-11
IPR001471
ProSiteProfiles
PS51032
102 159 58 23.037
IPR001471
SUPERFAMILY
SSF54171
102 158 57 3.99E-21
IPR016177
SMART
SM00380
102 167 66 4.4E-36
IPR001471
PRINTS
PR00367
103 114 12 3.4E-10
IPR001471
PRINTS
PR00367
125 141 17 3.4E-10
IPR001471
MobiDBLite
mobidb-lite
160 189 30 - –
MobiDBLite
mobidb-lite
168 189 22 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0439300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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