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LotjaGi2g1v0444800.1

Overview

Field Value
Gene ID LotjaGi2g1v0444800
Transcript ID LotjaGi2g1v0444800.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT1G71520.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9C9I8|ERF20_ARATH Ethylene-responsive transcription factor ERF020; TrEMBL-Plants: tr|G7K978|G7K978_MEDTR AP2 domain class transcription factor; Found in the gene: LotjaGi2g1v0444800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94017762..94019107) extracted from Lotus japonicus Gifu genome v1.2.

CCTCTTCCTCATCCTCTTCATTCACAACATTCCACCAACAGAGAAGGTGATCATTGTCATCAATAAGCAAGCATATATAA TATAATAGTATATCATGAACTGGAGTTCAGGGCTTCACACGAACAATGGAAACAAGAAGTTCAAGGGAATCCGGCGCCGG AAGTGGGGCAAATGGGTCTCCGAGATTCGAGTTCCGGGCAGCCAAGAACGCCTCTGGCTTGGAACCTACGCCACGGCGGA GGCTGCGGCGGTGGCTCACGACGTCGCCGTGTACTGCCTGAGGAGGCCTTCCACGGCGGAGAAGCTCAACTTCCCGGAGG CCTTGTCCTCCTACTGTGCTCACCAGAGGGATGACATGTCTCCGAGGTCTGTTCAGAGGGTGGCTTCGGATTTCGCCATG GACGTTGATGCGCGCAAGGTCGCAGCAGGGGAAACAGAGAGTCACGTGAGTAGTGAGAACAGAGCACGTGATGGTGGTCA CGTGCGTAGCAGTAGTGGTGCACATGATGCTGGACAAGTTGCAAGTGCGGATGTTGATGTGTTGTGGTGGGAAGGTTTGG GTGGGGATGATGGTGGGGCCGCTTGGCAAGGATTAATGTCTAGAGATTATGGAGAAGGGGAGGCTTTAAGCATTTCCATT GAAGATTATCTTTAAATAAGGCTTGATCCAAGATTTGAATTGAGTTACTAGATGATGTTTTGGGTGTGGGTTACTTAATT GTATAGATTAGTAGTTATTGTCATGAATGAACCGGTTTAAATTGCAGTTATGTTACGGCTGCAATTGCGGGTTGATACGG CTGCAATTGCAGTTGCTATACCTATTCGGGGATTCCAAAACGGTTAAGTTGTCGATGCAATTGCAGTTGGTTGCATACTG CAATTTGAAACCCGGGTGTGAGTATGACAAATAGGTATAAATGTATGAGATCATTTTGCTTCTAAGAAGATGTTTTGGCT GCCTTTTAAAGCAAAGGAAAATGAGGTGGGGGAAAAGATAATGGAATTGGTTCATTTCACAGATATCATTTGTACTTGCA ATTCTGATTTGGTACCTAAGGGACTAGTGTTCCTGTGTTTGTTGGGATTTTAGCCTCTAGCTTTTGCAATCTTAAAGATC ATGAATGATGCTCCAGAGCTCGGCATGAAGAACTGAGCAGTTTCCTAAATTAATAGAAAACCCAAAGAGAAAATTTCCAT AGTGATCCCGAACCAAGCCACCACATGCTGCTGCATTTTCAACAAGAAGCAAGGAACCATCTGTATTGAGCTTGACCCAA GGCTCCAATGAGATACACCAATCAAATGAACTAGAGTAAACATCATTGATATAAAAGAGTGTGTTT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0444800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACTGGAGTTCAGGGCTTCACACGAACAATGGAAACAAGAAGTTCAAGGGAATCCGGCGCCGGAAGTGGGGCAAATG GGTCTCCGAGATTCGAGTTCCGGGCAGCCAAGAACGCCTCTGGCTTGGAACCTACGCCACGGCGGAGGCTGCGGCGGTGG CTCACGACGTCGCCGTGTACTGCCTGAGGAGGCCTTCCACGGCGGAGAAGCTCAACTTCCCGGAGGCCTTGTCCTCCTAC TGTGCTCACCAGAGGGATGACATGTCTCCGAGGTCTGTTCAGAGGGTGGCTTCGGATTTCGCCATGGACGTTGATGCGCG CAAGGTCGCAGCAGGGGAAACAGAGAGTCACGTGAGTAGTGAGAACAGAGCACGTGATGGTGGTCACGTGCGTAGCAGTA GTGGTGCACATGATGCTGGACAAGTTGCAAGTGCGGATGTTGATGTGTTGTGGTGGGAAGGTTTGGGTGGGGATGATGGT GGGGCCGCTTGGCAAGGATTAATGTCTAGAGATTATGGAGAAGGGGAGGCTTTAAGCATTTCCATTGAAGATTATCTTTA A
Download CDS Sequence

Protein sequence (LotjaGi2g1v0444800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNWSSGLHTNNGNKKFKGIRRRKWGKWVSEIRVPGSQERLWLGTYATAEAAAVAHDVAVYCLRRPSTAEKLNFPEALSSY CAHQRDDMSPRSVQRVASDFAMDVDARKVAAGETESHVSSENRARDGGHVRSSSGAHDAGQVASADVDVLWWEGLGGDDG GAAWQGLMSRDYGEGEALSISIEDYL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31985:SF45
10 129 120 9.8E-54 –
PANTHER
PTHR31985
10 129 120 9.8E-54 –
Gene3D
G3DSA:3.30.730.10
14 76 63 6.5E-25
IPR036955
CDD
cd00018
14 76 63 1.48001E-12
IPR001471
SUPERFAMILY
SSF54171
15 74 60 5.17E-17
IPR016177
Pfam
PF00847
15 63 49 1.0E-8
IPR001471
SMART
SM00380
15 80 66 2.1E-26
IPR001471
ProSiteProfiles
PS51032
15 74 60 21.311
IPR001471
PRINTS
PR00367
16 27 12 1.2E-8
IPR001471
PRINTS
PR00367
38 54 17 1.2E-8
IPR001471
MobiDBLite
mobidb-lite
111 132 22 - –
MobiDBLite
mobidb-lite
111 140 30 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0444800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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