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LotjaGi2g1v0445700.1

Overview

Field Value
Gene ID LotjaGi2g1v0445700
Transcript ID LotjaGi2g1v0445700.1
Lotus japonicus genome version Gifu v1.2
Description ethylene-responsive transcription factor; TAIR: AT1G71450.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9C9I2|ERF21_ARATH Ethylene-responsive transcription factor ERF021; TrEMBL-Plants: tr|A0A151SD08|A0A151SD08_CAJCA Ethylene-responsive transcription factor ERF021 family; Found in the gene: LotjaGi2g1v0445700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94079132..94080076) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTGCTCACTCAGTGACAGCATGTTCCCACTTTCGTAACTACGACGAACCTTACCCTACCTCCTCGTCTTCGTCGACC TTCAACTACAACATCATCATATATGAACTCTCACTCCTTCAATCTTTTATCCAAAACCCAATTCATCAATGGAAGAAGAA ACGAACAGCACCGTGCAAGAACAATCTGTGATTGCTGCTGCAACAGCAACCAAAGCTTATCGAGGGGTTCGAAAGAGGAA GTGGGGGAAATGGGTGTCAGAAATCAGGGAGCCAGGGAAGAAAACAAGAATCTGGCTTGGGAGCTATGAGCAACCTGAAA TGGCAGCAGCGGCGTATGATGTGGCGGCATTCCACTTGAAAGGACATGCGGCGAGGCTCAACTTCCCGGAGCTGGCTGAG ACAATGCCACGACCGGCTAGCTCGAAAGCTGAAGATGTTGTATTGGCAGCACAACAAGCAGCATTAATGCTCAAGAGATC ATCACCACCACCACCAATGCCTGAGGGAGGTAGTGGTGGTGGTGGTGCTCCTGACCCTGCTGCTGTGCGTGTTGGGCTGT CACCGGCACAGATACAGGCCATCAATGAGTGTCCCATGGATTCACCGAATATGTGGATGCAAATGGCGGCAGATACACTC ATGTTTGATGATGAGTCTATGAAGACGGTGTACTCGAATTGTAATGGAGATGATGAGGTTATGGAGTTGAGTGGGTGGGA AGAAACACAATTTGAGTATAAGTCCTTGTGGGACTCCTGGTCCTGAACTACACTCTAGAGTCTAGAATAATAACACTAAT AAATATTCAATGCACACCCTTGATTTTGGGGTCATTTTATATTTTATTTGGAGAGGGCAAAGCCCAATTCATTTTTTAAT TAATTATAGTACCATATGGTATAGTATGAGATTGATTCAATGAAGCAAAAGGAGTAACTATTTTA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0445700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAAGAAACGAACAGCACCGTGCAAGAACAATCTGTGATTGCTGCTGCAACAGCAACCAAAGCTTATCGAGGGGT TCGAAAGAGGAAGTGGGGGAAATGGGTGTCAGAAATCAGGGAGCCAGGGAAGAAAACAAGAATCTGGCTTGGGAGCTATG AGCAACCTGAAATGGCAGCAGCGGCGTATGATGTGGCGGCATTCCACTTGAAAGGACATGCGGCGAGGCTCAACTTCCCG GAGCTGGCTGAGACAATGCCACGACCGGCTAGCTCGAAAGCTGAAGATGTTGTATTGGCAGCACAACAAGCAGCATTAAT GCTCAAGAGATCATCACCACCACCACCAATGCCTGAGGGAGGTAGTGGTGGTGGTGGTGCTCCTGACCCTGCTGCTGTGC GTGTTGGGCTGTCACCGGCACAGATACAGGCCATCAATGAGTGTCCCATGGATTCACCGAATATGTGGATGCAAATGGCG GCAGATACACTCATGTTTGATGATGAGTCTATGAAGACGGTGTACTCGAATTGTAATGGAGATGATGAGGTTATGGAGTT GAGTGGGTGGGAAGAAACACAATTTGAGTATAAGTCCTTGTGGGACTCCTGGTCCTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0445700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEETNSTVQEQSVIAAATATKAYRGVRKRKWGKWVSEIREPGKKTRIWLGSYEQPEMAAAAYDVAAFHLKGHAARLNFP ELAETMPRPASSKAEDVVLAAQQAALMLKRSSPPPPMPEGGSGGGGAPDPAAVRVGLSPAQIQAINECPMDSPNMWMQMA ADTLMFDDESMKTVYSNCNGDDEVMELSGWEETQFEYKSLWDSWS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31985
21 160 140 1.8E-57 –
PANTHER
PTHR31985:SF111
21 160 140 1.8E-57 –
Gene3D
G3DSA:3.30.730.10
22 82 61 2.3E-28
IPR036955
ProSiteProfiles
PS51032
23 80 58 22.352
IPR001471
SMART
SM00380
23 86 64 3.5E-34
IPR001471
SUPERFAMILY
SSF54171
23 81 59 3.07E-21
IPR016177
CDD
cd00018
24 82 59 9.29216E-20
IPR001471
Pfam
PF00847
24 73 50 6.3E-11
IPR001471
PRINTS
PR00367
24 35 12 3.4E-12
IPR001471
PRINTS
PR00367
62 82 21 3.4E-12
IPR001471
MobiDBLite
mobidb-lite
109 131 23 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0445700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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