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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0452800 |
| Transcript ID | LotjaGi2g1v0452800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit beta type; TAIR: AT3G22630.1 20S proteasome beta subunit D1; Swiss-Prot: sp|O23714|PSB2A_ARATH Proteasome subunit beta type-2-A; TrEMBL-Plants: tr|C6SW24|C6SW24_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0452800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94561182..94564835) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAGAAAAGAGGGTTTCTTTATTAACAAGACAAAGTAAAGTATTCACAATTTATATAACTTGTTCAGAGGGTTGG TTCCTTTCACAAACTTTGAAATCGGCATCGATCTGGTGATATCAACACTGAGAGAGAAAGCATGGAGTGCGTGTTTGGAT TGGTTGGCAATGGCTTCGCCATCGTTGCGGCGGATACATCGGCGGTGCACAGCATCCTCGTTCACAAGTCCGACGAGGAC AAGATCATGCTCCTCGATTCCCACAAGCTCGTCGCCGCCAGCGGAGAGGCCGGTGACAGGTTTTGATTTCCGATTCCATA CCCTCTTCCCGTTTCTCCATTCTCTCTTTTCTCTAATCTCCACCTGAAGTTGTTTCAATTTTGGTTCGTTTTCATCAGGG TTCAGTTCACGGAGTACATTCAGAAGAACGTGGCCTTGTACCAGTTCCGTAATGGAATCCCTTTGACCACCGCCGCTGCT GCCAATTTCACTCGTGGCGAGCTCGCCACTGCTCTTCGCAAGGTATACCCTTTTTCTCAATTTGTTTCACTGCTTGCTTC ACTTTTCGTAAACCCTAATTAGTGATTTTAACAATTTGCCCTCTTTTTTGTTGTGATTCATGTTTTTGGTACTGCCTTTG AAGTAATAGAACACTGTTCTCTTGGTTTTGATGTAATGTCAGGAGTTTAACATTTGGGGTTTTAAGGTTTTTCAACTGAT TTATCAGTATTTGGAATTTGTCTTTACTTTACTTCTGCTGGTGATAGATTGACTAGTTTTACTGTTTTAGTCCATATCAA TTGGGAGGTTCAAAGGAAAAAAAGAACTGCCTTAGTAAAGGAAAATGTATTATAGGTACTCAATTGAGGTCTCTACACCC AAACTAGTAAGGAATTGGCCTTGTGATGGATGGAAATACTGCTTCCTCCGAGGTTTTAGTTGCTTCCCATGTTATATAAT TTTGGTCTAGGAGAGATGGAGTTTTAGCTTGTTAGCTACTAAACATGTCTTAAAGTATGTTAGTTTTCACCTTGAGCTTC ACTCAACTTAAGTTGGCTGTGTTTACATTTACTTTGGTACCTTGAAATGATAAAAGTTCTCAGTTTCGCTTGATAAATAA ACAGTCTCTTATAGTTGGTTATGATTGGCTCACATCTGCTTCCTCTGTTCTTAAGGGCTTTTCAGCTTATCATGTATCTT TAACATGCTTGTTAAATAGGTGGATGATATAAGCTGTGATTATTAAGAGCCCGTTTGGATACGGACTTATTGGAGTTTAT CTACTAGAAAAAGCACTAGATAAGCTCCATTAAGCGTTCTGTGGTTTGCATCTAAACGGGTTCTAAGATAATTATATGTA TGTCTGGCTTGGCTTCTCTAGCTCCATTCAGTGACTTCAGTTCTCTTGTTTTGTTTCTGAATGTGAACATGTTCCTGTTT GCCAACTTCAACATATTATAGTCTTTTGTATGTGAACATGACCCTGTTTTTTTCCCCCTTATATTTCTCATGTATATGAA AATGGCCCTGTTTCCTATATCAATTCAAAGCCGAGTTTTCTATTGGCCATGTTTTGTGTTGATCCTTCTCTTCATTGTGT TCCCCTCATTTCACTTGTTTATGTTGATTCCTGGAATTGTGCTTTTTTTTCCATTAAATATTTTTATCATGGTTATGTAA ATTTTAAATTTATTCCCTTAGTGGGATCAGGCTTTTGTTGATGTTGTATATAACGCCCCAGTACCCAGGATTTTTTAAAA TCCCTCATGCCGTACCATAGCTGTATCCATGCATCCTATTCTTAAAGGGCTTTTCAGCTTATCATGTACCTTTAGCATGC TTGTACTATGGTTTTGCTTGTTAACTAGGTGGCTGATATAAGCGGTGATATTAAGATAATTATTTCCCATTGGCATCAAT TTATGTGCCATCGCTATTAGATTTAAGCAGTTGTTTTTTTATTAAAAAAAATCTTAAGATAGAAGTCCTTGTCCTTCTTT AGTTTTGTTTGTTATCAGTGCTGGATCTTTATTATCTATAGTTTACAATGAGAGAGTAAAAAATGTTGTTGAGTTCCAGT CACATGCTCAGAAAAACATCCTCCCTTATCCTAATTTTGATCCATAGAGGTCGCTATAAAGAATTAGAAGATTTTATTAG ATCAAGATTATTAATATGCTCACACTTATTTTGTGTATTTGTACTTCATTTTATTAGATCAAGATTATTAATATGCTCAC ACTTATTTTGTGTATTTGTACTTCATTAGCCATATTGCTTTCTGATTTTGAATAACGAGTTTGTTTGTGAATTTGGTTTT CTCTAGAACCCATACTCTGTGAACATCCTTCTTGCTGGTTATGACAAAGAGACTGGCCCATCACTATACTATATTGACTA CATTGCAACACTTCACAAGCTTGAGAAGGGGGCTTTTGGCTATGGCTCGTATTTTTCACTGTCAATGATGGACAGACACT ACCATAGCGGAATGTCAGTGGAAGAAGCAATTGATCTCGTTGATAAGTGCATTCATGAAATCAGGTCAAGGTTGGTTGTG GCACCACCCAACTTTGTTATCAAAATTGTTGACAAGGATGGTGCAAGAGAGTACGCATGTCGCCAATCTGTCAAGGATAC TCCTGCTCCTGCTCCTCCAGCTTGAGTTAACTTTGTTCCTTATTTTGAATGGACTTCTTTCCAGTTGTTTTTTCCTTTCG CTTTCTCTTATTGGTATTGGGATGTCTCTGAAAATCATGGTCTCTAAGTGCTCTAAAAGTTAATGGTGTATCATTTGAAT TAATATGTATGAGGTAGGCTTGATTTTATATACCTCCAGGTTGGAATTGTGAAAATTAAAGAGTTGCACGGGTGAATCTA AGGTAAGATCTGTCAAAAAGGAAACTGATATCAAAGTAGCCAAATGGTGTTTGTTAAAATTAAAACAAACACCCCTTTAC TTGGTTGAAATATAAGTGTCTGATAAATGAGTCCATATACATTTTGTTTACAAATGAATTTAATTAATTTTCAATTTTTT AATTAAAACTAAAAGGGATGCTTCTAAAATACGGTCATGTCACAGTAGTATGATTGGATGTCTCACTATATAGAAAATAA AAAATTGTTAGAAGATCGTTAGACTACGATTTCTTTCCGGTCTCTGCGTCTTTGCTTCTTGTAGGTTTGGGTCGTTGGTT CTCTGTGGCGGTTGTTCCTTTAGAGGTAGTGTTGTTGGAGAGATTTTTCCTGTGCTATGCATGCTCTACTCGTTTGGTCG CAATGTTTTTTCTTGTTACTTTTTATGCTTCAAGTTATTTAGGCTTTGCGTCTCAAGCTCTATGACGTTTTTTATTGCTG TGGTTGGGTCTTTTGGTTTTCATTGTTGGGTTGAGTCTCTATTTAGCAAGTGTTGTGTGACTGTTAGTATCCCGTTCGGT TGTACCTCTCGTTGCTTTCGACTTCAATAGAGACTTTTCCTAGTGGTGTAAATGTTTGGGCTTGTTGGTTTGATTTGGCG ATGTTTGTGGGTTTTTAGAGGTTTTGGAGGAATTTTACCGTATTGGCTGAGTTTTTGCCAACTTTCTTGGCTGGGTTGTT TCTCAACAACAACGAAAAAAAAAAAACACTTTTTCTTTCTCAATCTTTGAACCT
CDS sequence (LotjaGi2g1v0452800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGCGTGTTTGGATTGGTTGGCAATGGCTTCGCCATCGTTGCGGCGGATACATCGGCGGTGCACAGCATCCTCGT TCACAAGTCCGACGAGGACAAGATCATGCTCCTCGATTCCCACAAGCTCGTCGCCGCCAGCGGAGAGGCCGGTGACAGGG TTCAGTTCACGGAGTACATTCAGAAGAACGTGGCCTTGTACCAGTTCCGTAATGGAATCCCTTTGACCACCGCCGCTGCT GCCAATTTCACTCGTGGCGAGCTCGCCACTGCTCTTCGCAAGAACCCATACTCTGTGAACATCCTTCTTGCTGGTTATGA CAAAGAGACTGGCCCATCACTATACTATATTGACTACATTGCAACACTTCACAAGCTTGAGAAGGGGGCTTTTGGCTATG GCTCGTATTTTTCACTGTCAATGATGGACAGACACTACCATAGCGGAATGTCAGTGGAAGAAGCAATTGATCTCGTTGAT AAGTGCATTCATGAAATCAGGTCAAGGTTGGTTGTGGCACCACCCAACTTTGTTATCAAAATTGTTGACAAGGATGGTGC AAGAGAGTACGCATGTCGCCAATCTGTCAAGGATACTCCTGCTCCTGCTCCTCCAGCTTGA
Protein sequence (LotjaGi2g1v0452800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MECVFGLVGNGFAIVAADTSAVHSILVHKSDEDKIMLLDSHKLVAASGEAGDRVQFTEYIQKNVALYQFRNGIPLTTAAA ANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVD KCIHEIRSRLVVAPPNFVIKIVDKDGAREYACRQSVKDTPAPAPPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 182 | 182 | 41.968 | ||
| Gene3D | 1 | 198 | 198 | 1.1E-48 | ||
| SUPERFAMILY | 1 | 190 | 190 | 1.18E-49 | ||
| CDD | 1 | 190 | 190 | 1.10937E-115 | ||
| PANTHER | 2 | 192 | 191 | 5.5E-86 | – | |
| PANTHER | 2 | 192 | 191 | 5.5E-86 | ||
| Pfam | 3 | 182 | 180 | 4.1E-40 | ||
| ProSitePatterns | 5 | 52 | 48 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi2g1v0452800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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