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LotjaGi2g1v0453800.1

Overview

Field Value
Gene ID LotjaGi2g1v0453800
Transcript ID LotjaGi2g1v0453800.1
Lotus japonicus genome version Gifu v1.2
Description Protein RDM1; TAIR: AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1; Swiss-Prot: sp|Q9LUJ3|RDM1_ARATH Protein RDM1; TrEMBL-Plants: tr|I3SID6|I3SID6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0453800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:94689640..94691834) extracted from Lotus japonicus Gifu genome v1.2.

TTTGACATTTGAGAGAGAGGGACAGAGAGAGAGATACACATGACTGTGGTGACGAAACGATGCATTTGAGAGTGCGCGGG GCGTGAGGGTTTGCAGTGTGCTTTGTGTGGGTGTGGGGGAACTTTGATGCCATTGCTGACAACTCGCTCGCTCTCTCGCT CTTAATTCTGCGCTTTCTCTCTCCCTCTCTTCTGCAATTAATTTGTTAGGTACGTTGTTGTTGCTTCACTTGCTTGCAAT TGCAATTGCAATGCCCAGTTCAAGTTATAGGGTTTGTTTTTATTTAATTTCAATTTAATTTTGAATTATTCTGATGCATG TTTGTCTGTAAATGGTGTTGATCAGGAACAAGAAGAAGAAGATGAATAGATCATTCGAGTCTTATTCCTCAAACCCCTCA ATTTTCCCCATTTTCAATGCTCCTCCAACTAATGGCATTCCTCTCCCAATTCCCTCCAACTCAGATATCATGTCTCATGG TATTTCCTTCCTTTTCCCTTTTTCATAACTCTGAATATTTGTATGACATCTTCATTATTACTGCCTGCTGCTTAATTTTG CTTCCTATTGTTTATGTTGCCTCAATCTCAATTTTCATGAGGATTTTTTGTTTTTTGTTTTTGTCTATTGTCTATGTTTG GATATGATTAAAGTTCTTGCACTCAACTTTGTCTTTTGGTTTCTAAGTAGATTGCATGTTGCTTTCTAGTTTATTTTGTC AATTTTGTGTGTTTGGATTTCTGTTAGCAATGGTTTAAAGTACTTTTAGATGAAATCCATGTCTTATAATGGATTGAAGA AAAAGCTATTTTAGATGAAAGCAACAGAAATACAAACACAAACCTTAGGTGCACACAATGCTTGCCGTTTTTATGAATTT GCTTATTTTAAAGTTCATGCTCATATGCAGATGTGCTCATCAAAAGGGCAGGAATGTATCAGGATTACATGAAGCAGATT CCAATCCCAAGCCATCGAGGCTCTGTCATCCCATTTACCTCATGGATGGGGTTAGGAAGATCCCTTAAGCAGTTATACGG GCAGCCTCTTCATTACCTCACAAATGTTCTCCTTAAGCAGTGGGACCAGCGGAGAATTGGCAGCGCGGATGAGCTTACGC CATTAGACGATATCATTCACCCGTGCAAAGCTGAAGCCATGGTCTGGCTGGCAGAGGAAGTCCACCGGAAAACCTCATCG CATTTCCAGATTGCTGATCTCTGGATGCTGGACCCGAAGTACAATGCTTTTCTTGATTCCATTTTTCCAAAATTAGAGAA CTCATCATGAAGCCATTTAGTTTAGAGGCTCTGTATTCACAAAAAAAAGTAAAGTTCAACAAAAAAAAGTTCAGAGGCTT TGTACTTTCTGCAATGTGTATCAGTTGTATTTTCCTGTTGGTACAGTAAATAGAACCTGCTTCCTTGACCTTTTCTTCCT TAACTTTCTGTTCTTAGCCATTTTCCATTGTAATAAATGGTTGCATCTCAGTGTGTCTCCCAGGACAGACTAAATATCCT GGACTAAAGGTTTTATATGAGCCACCTCAAATTACAATATATTTGTTTTGAACTTTTGTCATCGCAAACCCTTGTTAATG CAGGTTTCAATAGCAATAGACAACAAAAATCCATACCTATTCAAAAATTTATAACAGCTATTGCTCCTTTGATTTCTGGT TTTTCTGTTTCTACTTTCCCGTGTAATTTGTGTATTGTTTGGTTTCTCTCCCTTTTGTTGTCCATGGTTTGTAAACCCCT TTGCCTTTTCAGTTTATGTCACATTCTTTAACATTAAAATAGAAGGCCATAAGTATATACTTTAGTTGCAAGGAGTGAAG TTGATTTGTAAACCAGAAGTTCTTATTTGTAACTTTATCACCAAAAATCTCTACAAGAACATGATCCTTCCTTGAAAAAA TGATACCTGTTATTATCTCTCATAGTAATTTCCCTATGGTATAGTTTTGATACTAGCTTCGCAAATGAGTGACAATCAGA ACACATTCTAAGATTTTTCACTACCCGTATAGGTATGCCTTGAGCAGTAATGATTAATCCATAAGCCATGGCTAGCTTCT CACTATGCCTGGCGAGCAAATGCTCCTTCTCGCGCTCATCCACATCGACCAAGACATTGGTTGTATCAGGAACAAACCCT GCCTGGTTCAGCCTGCAGTTTATTTCTTGTAGCAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0453800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATAGATCATTCGAGTCTTATTCCTCAAACCCCTCAATTTTCCCCATTTTCAATGCTCCTCCAACTAATGGCATTCC TCTCCCAATTCCCTCCAACTCAGATATCATGTCTCATGATGTGCTCATCAAAAGGGCAGGAATGTATCAGGATTACATGA AGCAGATTCCAATCCCAAGCCATCGAGGCTCTGTCATCCCATTTACCTCATGGATGGGGTTAGGAAGATCCCTTAAGCAG TTATACGGGCAGCCTCTTCATTACCTCACAAATGTTCTCCTTAAGCAGTGGGACCAGCGGAGAATTGGCAGCGCGGATGA GCTTACGCCATTAGACGATATCATTCACCCGTGCAAAGCTGAAGCCATGGTCTGGCTGGCAGAGGAAGTCCACCGGAAAA CCTCATCGCATTTCCAGATTGCTGATCTCTGGATGCTGGACCCGAAGTACAATGCTTTTCTTGATTCCATTTTTCCAAAA TTAGAGAACTCATCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0453800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNRSFESYSSNPSIFPIFNAPPTNGIPLPIPSNSDIMSHDVLIKRAGMYQDYMKQIPIPSHRGSVIPFTSWMGLGRSLKQ LYGQPLHYLTNVLLKQWDQRRIGSADELTPLDDIIHPCKAEAMVWLAEEVHRKTSSHFQIADLWMLDPKYNAFLDSIFPK LENSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR36366:SF1
32 165 134 4.4E-72 –
PANTHER
PTHR36366
32 165 134 4.4E-72
IPR015270
Gene3D
G3DSA:1.20.120.690
40 161 122 2.4E-58
IPR036319
Pfam
PF09187
42 160 119 3.5E-60
IPR015270
SUPERFAMILY
SSF109920
42 159 118 9.02E-59
IPR036319

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0044030
Biological process Regulation of DNA methylation Any process that modulates the frequency, rate or extent of the covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0453800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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