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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0454100 |
Transcript ID | LotjaGi2g1v0454100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NADH-ubiquinone reductase complex 1 MLRQ subunit; TAIR: AT1G63060.1 ribosome biogenesis NEP1-like protein; Swiss-Prot: sp|Q30TP6|RPOC_SULDN DNA-directed RNA polymerase subunit beta'; TrEMBL-Plants: tr|I3SGY9|I3SGY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0454100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94719055..94720634) extracted from Lotus japonicus Gifu genome v1.2.
GGTTCTCATGGGCCTTTCTGCTTCTCAAGTCCATATATAAATGGATTCCCACCTAGCAAAATTTTGAAAATAAAAAATCA CTCGTGTTTTGACTATAAAACAACAACAAAATCATTTGTGTCTGTTTTGTTTAATTTGATCGCAACAGCAGAATGTCTTT GAGGAACGCACTGGTAAATCGACACCTTTAAATTGGTTATGATTTTAAGTTTTAAATCACATTGATTTGCATTTGCTCTT GCTAGAGAGAACTTTACCAATCATAATAACATGTGGTTTTGGTGCATGCAGAAAAGTTGGCGATGGACTCTGACTCAACA ATTGGGAGAGGGAAGGCGATTAATTGCCACCTCCACCACTCCAAAGTTGAAGCCCATGTCCCCAGCTATAGATGGTGCTC ACCATGACCATTCCAATTCTAGGTATGGATGGAAATGTCAATGTAGAAACGGTTGATACGTGTATCATCATCGACTACTT CAAAACTTATTTTTACAGCGGTTTTTAATTGTCACACAATAAAAAATAGAAAGAAGAAAATTAACTTTGCCACTTTGCCG TGGTAATTTTTTCCTTTTATGGTTATTTGGTGTTTATCATTACTATCTATCTCATTTTTTTGCTATATGTTCCTATTAAT TGAAAGTGCGTTTAATATTATTTTGATATGTAATTGGTGATGATGGTAGGAAGAATGCTTTGAAGGCAGATTTAACACCG GTGTATATTGTGTGTGGAATGGTGTGTATGGCTTTGACTATCGGAACACACACCGCGTACCAACAATTGGCTCGTTCTCC AAGTGTCAATATCAACAAGAAAAGAAGAGAATCTGTGCAAGAAGTGGATGATCCCGATCGCACCATAAATTCTGCTGACA AATTCATCAATGGTTCTTTTCTTAGGAAAGTGTCTCAAATCCAAGAAAACAAGAGCACGCTCCATGATCCAGTCCACCCT AATCCTTACACCCAGTAAGTTCATTCTCCCATCGCTGATTTCATACTTGAACGTGTGTTGAAATGTTAATTCTAACACAA AAGTTAAGAGTATGTTCGGATTAACATATAGTTCCTCATAATTAATTATGGCAGGCATAAGCTATTCAGAAAAACTTCTT CCCCGTAGTTGATCTTATATGTAGAACTAATGAAGGTGATTTTTGTGGCAGCCCTCGAACCGCTGAGACATTGAAGTCAG TGGGCATTGAGCCTGGGAGGCATTGATATGTTGTTTTCTTCCTAATCAAACGTGGTGGCACATAGAGTCTTATATCGCTT CCATCTTCAATTTTGAGGACTACTTGAGATCGTAAGATGAGAAGGTTTTGACTTTGTGGTTGTAAATTTGTTTTTGTAAT TTTTCACTTGTGGCTTGTTATGTCACACTTGTAAATTTAGGTAAATGTTTGGTACTTATTAGCCCACCTTCACTCTTGAG AGTGGAATTATAAGGATGCGGCTCTGGTTCTCTTCATCTTTACAGCAGCTATATGTCTGCATTAATTGTACATAAATAAT AAATAAAAGTACTACATAATACTAACTTGTGAAATAAAGCTGCCACAGGATTTTCTATAA
CDS sequence (LotjaGi2g1v0454100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTGAGGAACGCACTGAAAAGTTGGCGATGGACTCTGACTCAACAATTGGGAGAGGGAAGGCGATTAATTGCCAC CTCCACCACTCCAAAGTTGAAGCCCATGTCCCCAGCTATAGATGGTGCTCACCATGACCATTCCAATTCTAGGAAGAATG CTTTGAAGGCAGATTTAACACCGGTGTATATTGTGTGTGGAATGGTGTGTATGGCTTTGACTATCGGAACACACACCGCG TACCAACAATTGGCTCGTTCTCCAAGTGTCAATATCAACAAGAAAAGAAGAGAATCTGTGCAAGAAGTGGATGATCCCGA TCGCACCATAAATTCTGCTGACAAATTCATCAATGGTTCTTTTCTTAGGAAAGTGTCTCAAATCCAAGAAAACAAGAGCA CGCTCCATGATCCAGTCCACCCTAATCCTTACACCCACCCTCGAACCGCTGAGACATTGAAGTCAGTGGGCATTGAGCCT GGGAGGCATTGA
Protein sequence (LotjaGi2g1v0454100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLRNALKSWRWTLTQQLGEGRRLIATSTTPKLKPMSPAIDGAHHDHSNSRKNALKADLTPVYIVCGMVCMALTIGTHTA YQQLARSPSVNINKKRRESVQEVDDPDRTINSADKFINGSFLRKVSQIQENKSTLHDPVHPNPYTHPRTAETLKSVGIEP GRH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 60 | 60 | - | – | |
PANTHER | 6 | 163 | 158 | 2.8E-64 | – | |
PANTHER | 6 | 163 | 158 | 2.8E-64 | – | |
TMHMM | 59 | 81 | 23 | - | – | |
Phobius | 61 | 81 | 21 | - | – | |
Phobius | 82 | 163 | 82 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0454100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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