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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0455900 |
| Transcript ID | LotjaGi2g1v0455900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuole membrane-like protein; TAIR: AT4G14950.1 SNARE associated Golgi protein family; Swiss-Prot: sp|Q5XF36|KMS1_ARATH Vacuole membrane protein KMS1; TrEMBL-Plants: tr|B7FLS1|B7FLS1_MEDTR Vacuole membrane-like protein; Found in the gene: LotjaGi2g1v0455900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94899085..94904091) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAATCCATGTATAAAAGAAAAAAGCGAGGTCTTAAACAACCTTAAACTACGGATATAGATTATCAAATAGGAGT ATTAATTAAGGGTGCACTAGAGAAGAGAAGAAGGAAGAGTTTTGTTTGGCGTGTTCGATCGATCGATCGAATGAGCGTAC GTAACAACCCCGTTGTTTACGCAAACCTCTGATTTTGGTCTTCTAGATCTGCAATCTTTCATTCCAACAACGTTTTCAAA ATTTATTTCTCTGGTCGGTCGAATTTAAGCGAATCAGAGTAGAGTTTATCCATCTCATTTGAACCTGCAAACTTGGAGAG TAGAGTGCGCACCCACGAGGAAAGATTCGTTTTCTAGTATGTGAGCAGTAATGGGGTCTGTCAATATAGCACCTTCTTCT TCTGGGGGCGCTCACATCTCCATCTCAGGCTAGTTTTTTTTTATTTCCTATCATGTTCTGCTTGATTTTTGGATCTGTGA AATTCTAAATGGATTAGTGAAATCAAGATAATGCATTCACCTTAATTTGGAGTGTTAAATCCATTCAAAGGAGTTTTGGA GCAATATATTTATCATAATACTGTATGTTATGGTTAATTTCCTCAATTAGGTTATACAAGTTAGTTGTTACTATTATACG ATTAATAGGTCTTTATTTTGTAGGGCTTCATGCGAAGCACCAACTGGAGCTACAAAATTTGACACTAACTACACAACCTT TCAAAACATTGAAATTCTCCACACTATCTGTGATTCAATACATAAAGAAAACTACATTGTATCTGTTGGCAAAAGGTGGA TGGCTTATGCTTTTCAGTATCGCCGTAGGGACTATTGGCATTTTGCTCATGACCCTTGGTTGCCTCCATGAGAAGGTACT TTTATGTTTTTACTCAATAACTTTTAGTTCTTGATCAAAGCTTCCATGGGAAACAATTTTTTTGTAATTCTTTTTTGGCT ATTATATTTGCATGCCATGTCATGCAGTAATTGTATAAAATTTGTAACCAGCCTAAGTGTTAATATTGGTATTTGATCAT TGTGTGAAGATCAAGTTAATTAGAATCAGATTTTTTTGAGTCTGGAAACTATATGCGGAATTTTGTAATTTAATTTCTAT TGTAATACACTGACATGTTAAGTAAACCTTTGAATTTTTTCCAGTTAGTTATTTTGTTCATTTTGTTTCGACACTCACGT GGAGTCTATAAATGCTTTTCTTTTTTGCAGCATCTTGAGGAGTTCCTTGAATACTTCCGCTTTGGATTGTGGTGGGTGGC CCTTGGGGTCGCGTCTTCAATTGGTCTCGGTGAGTAAAATAGGCATGCACCGAGAAAACTCTTCTTGGTTATGTAACCGT AGTATTATGATTGGTCCTATAGGTAGCTTGTGCTGTGTGATTTGAACCTAAAGAAAGCAAGTGCTTGCATTATGTAGATT TTCTACTTATGTGAGGAATTACTGATCCTTTGCTATCATCTTGATCATATGCCTTGTAGTCCATGAGTTTGCATTTTCCC TCTTATAGCTAAATTGTTCTCTTATCATTTTTATTTGGTTCAGGATCTGGATTGCACACATTTGTCCTGTATCTGGGTCC TCACATTGCACTGTTTACAATAAAAGCAATGCAATGTGGTCGAGTTGATTTGAAAAGTGCTCCATATGATACAATACAGT TGAAAAGAGGTCCTTCTTGGCTTGATAAAGACTGTTCTCTGTTTGGGCCACCATTATTCGAGTCAGTATATGGTTCACGG GTTCCCCTCAGCAGCATTTTACCTCAAGTCCAGGTGGAGGCTGTTTTATGGGGTTTAGGAACAGCAATAGGGGAGCTTCC TCCTTACTTTATCTCCAGGGCAGGTATGACGGGTCTAATCACATGCTACTCTCATTGTCTTCCATTAGCAAATAATCTGA TTTTAGCACTGCATTACTGTTAAAATTTTTGTTAATTTGTCAATTGTGTTGTAACTTGGAGTCTATAGAAAACAGGAAAG AAGACATAAATAGGATTAAAACCTTCCGTCTCTTTCCTCTGACCCCAACCTTGTCTCTCCAATTACAAATTGACACATCA TTTAAAATTTCCAAGTCAGATATCCATTAAGTTTAACTACAACTTAATGACGTCACCCATTTTTTGCTCTCCTTGGCATC TTTCGCTCTCCCTGGCGTCACCCATTTTTCCACCCACACCACCTCTTTGGAAGAGTTCTTCCCATAGATCTATCTTGACC AACTAATTATGACAAAAGGAAAAAGATTAAATCGAGCAGTGGCTGAAAACTTGGCCAAAGTATCAATGTGGCAAAATTAT TCCCGTAAATATAATTGCTCAAGTGGCTGTGTAATATTCCACACAAAAAAAACTAACTTGCTGTTTTTCCAACAAAAAGA TTAATCCTGGCTTCTGAATCTTTTCTCCTCATGGTTATCTACACAATGAGTCATGTTGCATAATGCATAGAACTTTAAAA TGAATGAAACAACCAATCATGAGACTTTGTTATGCAAATAATATTATTGTTAGAAAGTTAGGATCCATCAACAAATGTTG AAGTAAATTAGGTAAAATGTAAGTATAGTGGACGAAAGAAATTGAAGAGAGACAATCTTATGAATGTATCCTACTGTTTG GTGCTTATTCATTAGTTTGTTTATAGATGATTCTAATGAAATTATTCATGCAGCACGCATGTCTGGGAGCAGAATGGATG CCATGGAAGAGTTAGATAGTGACGATAAAGGAGTCTTGAATCGAATCAAGTGCTGGTTTCTTTCACACTCGCAGCATTTG AATTTCTTTACCATTCTAGTACTTGCTTCGGTTAGTATGTACTTCATGTTTCATTTCTAGCATGGCCTTTTCCTCATTCT TAAATAGTTTATGCATTTTCTTCTGCAAAAATATTTGGTAGGATGTTATTGGTATTAGAGGCCTTTTGTCTATGGCAACT TTTTGAGCTGGTTTGTTAGCCTTGACTCAATCAGTAAACAGCTTATTCTTCTGAGTGTCAATTTTTTGCTACCTAAATGT GAATGTGCATTCTTGATTCATCACAATCATATAAGTATTTCCCTTTTTTTTCTTTGGGGGGGGGGGGGGGGAGGGTTCGA AAATGACCGTTACTTTTAGGCATGCAAGTAATTTTTTTTAGTTTAAGGTTGACTGGACAACTTATGCTGATTAGTTGAAA TCTTTACCCAATTAGTAATTGCTGTTAAAGTTTCTTAATTGTGGTCCTGTGCATAGTAGCTTCATTGCTGTAACTGCTGT TCATTTATGAATATGTTTGCATCTTCACAATCCATAGTACATACACAAGTAATATTGCAATTATTTTGTTTCTGGGTGCT GTGCTGCATTTTTCAGTTTTGCCTGTTCTATCACTTTTAAATAAAGACATTAGATTTAGCATTTCTTTTATTTGCTTTAA CATGTAAGCTTCTATTAACTGGATTTATATTTCAGGTGCCAAATCCTCTATTTGACCTTGCTGGAATTATGTGTGGACAA TTTGGCATTCCATTTTGGAAATTTTTCCTCGCAACCTTGATTGGAAAGGCAGTGATTAAAACTCACATACAGGTTTGTAC ATGTTTTAGATTTCTCTTGTCCCTTTATCTTCTATTTTGCCCCTTTTAAGCCTTTCATTTGCTTTGCAACTTCTCCAAAT GTTGACCAAGCATAATGGCATCAGGTGATCCATATGATCTCACTTAGTGGCATAAGACTTTTGTTGTTGTTGTTGTTGTT GCGGATGCCACCTGATCTTATTATTTAAATGTATTATCAGAATTGGAACCAAGTTGATCGTACTTGTAACCTCGGAGGAC ACAAAAATGGATGTTTACTCTTCAATAAAATAAGAAACCCTCTTAGGCACAATGCTAGTAAAAGTATTTGACTAACACTG CATATTATATACTTTCTGCAGACAGTTTTCATCATCTCAGTTTGCAACAATCAACTTCTTGACTGGATAGAAAATGAATT TATCTGGGTTCTCAGCCATATACCTGGCTTTGCATCTGTCTTGCCTACAGTAATTGCAAAACTCCATGCAATGAAAGATA AGTATCTGAAAGCACCCCATCCAGTTTCTCCAAATATTCAGGTACCCATTTACTGCAATGTAATGTCAAAATGTGTTTAT CCTTGATCCTGCTTCTACTTTGATTAGAATGATAAGTTGCTAAATACTGACTAACAGCCTCAAAAAGTCTTGTTTATTTC TTAGATACATGTCCATTGATTGCGTCTTTGTTTTCTGGAAATTATTTCATTGTCATCATCATCACCATCTTCAGGGTAAA AAGTGGGATTTCTCGTTTGCTTCAATCTGGAATACTGTTGTGTGGCTCATGCTCATGAACTTCTTTGTCAAGATAGTGAA TGCAACTGCGCAGACGTATCTGAAGAAACAACAGGAGAGAGAGCTGGCTGCCTTAACCAAAAAGTTCACCACATCAGATT CAGACACACAATGAAATGCTCATGTTCTTCTTGTGGTTCCATTTTTTTAGCTGTTCCACTTGTGAACAGAAAGTTGGAAT TCAAATTACAGTTATTTCTCAAGTCCCCATGGTAAAGCTACTCTCGAAACAGGGCGCACCGGTCACTACATTAGTGAATA TACACAACAGGCAACAAAAGTTGCCTTTTTGTTCAACCGTGTACCTTGGGGCAAACATTGTTTGGATTTCAAGATGTTAA CCCCATTTAGCTAATGCTACAACAAAAATCCTATTCTTTTGCAATAGCAAAGACAAATGATTAGTTCCTTTATTTTTTCT AGCTAGTAAACTACAAACTGTTCTCTCTTATTTAGCATCATTCACTATCACTATCATTAGGCTTTAGTCATCTATGTCTC TGATTTTTTATTTTTTTGTTCTTGTTGTTGATCAACCTATATCTCTGATGCCTGGGTGATGTGAACTATGATACTTTTTC TTCTTAACAAATATTTGAAATATGTTCAATGGCAAATAATTAGAGAA
CDS sequence (LotjaGi2g1v0455900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTGTCAATATAGCACCTTCTTCTTCTGGGGGCGCTCACATCTCCATCTCAGGGCTTCATGCGAAGCACCAACT GGAGCTACAAAATTTGACACTAACTACACAACCTTTCAAAACATTGAAATTCTCCACACTATCTGTGATTCAATACATAA AGAAAACTACATTGTATCTGTTGGCAAAAGGTGGATGGCTTATGCTTTTCAGTATCGCCGTAGGGACTATTGGCATTTTG CTCATGACCCTTGGTTGCCTCCATGAGAAGCATCTTGAGGAGTTCCTTGAATACTTCCGCTTTGGATTGTGGTGGGTGGC CCTTGGGGTCGCGTCTTCAATTGGTCTCGGATCTGGATTGCACACATTTGTCCTGTATCTGGGTCCTCACATTGCACTGT TTACAATAAAAGCAATGCAATGTGGTCGAGTTGATTTGAAAAGTGCTCCATATGATACAATACAGTTGAAAAGAGGTCCT TCTTGGCTTGATAAAGACTGTTCTCTGTTTGGGCCACCATTATTCGAGTCAGTATATGGTTCACGGGTTCCCCTCAGCAG CATTTTACCTCAAGTCCAGGTGGAGGCTGTTTTATGGGGTTTAGGAACAGCAATAGGGGAGCTTCCTCCTTACTTTATCT CCAGGGCAGCACGCATGTCTGGGAGCAGAATGGATGCCATGGAAGAGTTAGATAGTGACGATAAAGGAGTCTTGAATCGA ATCAAGTGCTGGTTTCTTTCACACTCGCAGCATTTGAATTTCTTTACCATTCTAGTACTTGCTTCGGTGCCAAATCCTCT ATTTGACCTTGCTGGAATTATGTGTGGACAATTTGGCATTCCATTTTGGAAATTTTTCCTCGCAACCTTGATTGGAAAGG CAGTGATTAAAACTCACATACAGACAGTTTTCATCATCTCAGTTTGCAACAATCAACTTCTTGACTGGATAGAAAATGAA TTTATCTGGGTTCTCAGCCATATACCTGGCTTTGCATCTGTCTTGCCTACAGTAATTGCAAAACTCCATGCAATGAAAGA TAAGTATCTGAAAGCACCCCATCCAGTTTCTCCAAATATTCAGGGTAAAAAGTGGGATTTCTCGTTTGCTTCAATCTGGA ATACTGTTGTGTGGCTCATGCTCATGAACTTCTTTGTCAAGATAGTGAATGCAACTGCGCAGACGTATCTGAAGAAACAA CAGGAGAGAGAGCTGGCTGCCTTAACCAAAAAGTTCACCACATCAGATTCAGACACACAATGA
Protein sequence (LotjaGi2g1v0455900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVNIAPSSSGGAHISISGLHAKHQLELQNLTLTTQPFKTLKFSTLSVIQYIKKTTLYLLAKGGWLMLFSIAVGTIGIL LMTLGCLHEKHLEEFLEYFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDLKSAPYDTIQLKRGP SWLDKDCSLFGPPLFESVYGSRVPLSSILPQVQVEAVLWGLGTAIGELPPYFISRAARMSGSRMDAMEELDSDDKGVLNR IKCWFLSHSQHLNFFTILVLASVPNPLFDLAGIMCGQFGIPFWKFFLATLIGKAVIKTHIQTVFIISVCNNQLLDWIENE FIWVLSHIPGFASVLPTVIAKLHAMKDKYLKAPHPVSPNIQGKKWDFSFASIWNTVVWLMLMNFFVKIVNATAQTYLKKQ QERELAALTKKFTTSDSDTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 63 | 63 | - | – | |
| PANTHER | 16 | 413 | 398 | 1.5E-200 | – | |
| PANTHER | 16 | 413 | 398 | 1.5E-200 | – | |
| Phobius | 64 | 84 | 21 | - | – | |
| TMHMM | 64 | 86 | 23 | - | – | |
| Phobius | 85 | 103 | 19 | - | – | |
| TMHMM | 101 | 134 | 34 | - | – | |
| Phobius | 104 | 127 | 24 | - | – | |
| Phobius | 128 | 253 | 126 | - | – | |
| Pfam | 201 | 295 | 95 | 1.2E-8 | ||
| TMHMM | 251 | 273 | 23 | - | – | |
| Phobius | 254 | 280 | 27 | - | – | |
| Phobius | 281 | 320 | 40 | - | – | |
| TMHMM | 286 | 308 | 23 | - | – | |
| TMHMM | 321 | 340 | 20 | - | – | |
| Phobius | 321 | 344 | 24 | - | – | |
| Phobius | 345 | 364 | 20 | - | – | |
| Phobius | 365 | 386 | 22 | - | – | |
| TMHMM | 369 | 391 | 23 | - | – | |
| Phobius | 387 | 420 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0455900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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