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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0458000 |
| Transcript ID | LotjaGi2g1v0458000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ROP interacting CRIB motif protein; TAIR: AT2G33460.1 ROP-interactive CRIB motif-containing protein 1; Swiss-Prot: sp|F4IVV0|RIC1_ARATH CRIB domain-containing protein RIC1; TrEMBL-Plants: tr|I1LE83|I1LE83_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0458000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95158025..95162253) extracted from Lotus japonicus Gifu genome v1.2.
AGCCAACCCCATATATGTCATGATAATCATATACCTACACATACCCCCCTATTATTAATTAATTAATAATTTAATTTCTT AAATCTTTGTTCTACCCTTCTCTCTCACCCCTTTCCCTTCTTCATTTTTAGATTTTCGTGGAACCCCACCTCCTATTCCA AACATAACAAACCCTCCCTCTTCTTCTCTTCTCTTCTCTTCTCCAACTCAACCCACGTTACCTACCATCACCATTAAGTA AACATTTTTAGATTTTCTTTGTTTTCCTCAACTTCTCGTGCTATTTGGACGGATATTCTTCATGAAATGTGGAAAACAGA GGCTTTGCATTGCATTGCATGTGTTACCAGCATTGATCATTCCCTCTAAAACAACATGATCAATGGATTCCAGAGTTGGA ACAAAACCAGCTTCCCGATTTCAATGTTTTCTCTAGCTTCATAATCCTCTTCAGGTAAACTTTTTTCCTTTTGTTTTTTG GAGCCCCGAACCCCATTTTCCCTTTACAATTTTCAAACTAAAGTCTTCCCTTTAATGTTGCAATAAAATTGTCTTTTTAT TCAATAATAAGATGATAAAATGATACCAATCTTCATTCACAGACTAATAAAAAAAAGGGGAGGTTCCATATCACATGCTC TGAAGCCTTACCTCATACATACTCTCCCCCTTTTTGTTTTGTATATAACACAAATCAATCGTTTCTCATCTCACTGCACC CATTTTCATTTTGTGACAGACAGGTAATAATCCATTTGCTCCTTAAAAAACAAAAAAAATCTCTGTGCTTCCACATTTTC TCATCCTTATACGGCACCATTGATCGAGCTAGTGAATTCCAATCCACCATGGCAACCAAGATTAAAGGGATCTGCAAAGG TTTCAAATACATTACTCAAATTTTTGGTAATTTTTCTACCTTTGCACACCCCAATGTGTTAATTTACCAGTACTTTGTTT TTTTCTTGTTTTTTGTGTGCCTTGGGGCTAAATTGTGAAATGGTTCTTGCAGTTGTGAAGGAGAGGGAGATGGACATAGG GTATCCAACAGATGTTAAGCACGTGGCTCACATCGGATGGGATGGTCCAACAGGCTCTGGACCAAGCTGGGTATGTATCT CCATTTTGCAATTATCTAAGATGAAATGTTTCATGATTTTCTCTATTCTTTTGCTGTTGTTTTTTAATGCAGATGAATGA ATTTAAAACAGCACCTGATTTTTCAACATCAATTGGTAGTTTGAGTGAGCGAAGAGACCCCAATGCTTCAACTATCACCT CATCTCGCTCCGTCCAAGGTATGCTTTTCTTCTCATTTCTCTAAAATCAATATTTGCATGTTTGAAAATCGTTGTACAAT TCATTCTAAAGCCGGAATAAATTCTTGGGAGAAGCTTATGTGACTAGTTTCTCGGGAATTTTGATTCACATCAGTCAGGA AATTCTTAAATTCACGTAGTTAAGGAATTTAAACCGTTCCATTAAGATATGACAGCTCAAATTTTAAGTTTATCTCTACG GTCTGATGTTGTGAAATATATGAGCCGGCAGATCTTGATTAAACGACTTAGCTTCTTAGACCGTGTGAATGTAGATTGGC CGAACGGCAAGGAACCCTAATCCGTTTATGGGTTCCCCAATTGATTATGAGGAAAGAGAAGTTAATTCAATCAAATTTTG GTCTTGGCTTCAAAATTTGATGCTATTGAATATTGATATCCTGGATTCATTTGGAACTGTGTTGTTGTCTCCCTAGCTTG AATAATACAACAGAAGGACCTTTCACGGGTCTACTAGTAGTAACTTCATGTGTATTTTATTATTATTGTTGTTGTCTCTT TTAGTTTCTTCTAGATAAATTCGTGAGTCTTGCAAAAGCTACCTAGATTCTTTGCCCCCATGGTGAGAATTTGGCAGTTC TGTCACGAGTAACTCTTTCACAAGGACAGGAATCTACTGACTCTTGGCTTTACCCTTGACACCTTTTTAGTGGACCAAGA CAGAGTTTTGCCTAAAGTTCTGATTATATTTAATTTAGGGTATCACATTGCAGTTTGCTCCCAAAATAAACTAAATTATT GGACCATAATGCTTGATAAGAATATGGTGTGATTATATTCTTACTTTATGATTTAGATGCATGGGTATGGACTTTATTTT ACAATTTAGAAAGCTATATAGTTATATGCAAGTTATTTGAGAAACATTGCAATCATCACCTGCCTGCCAAGTGCCAACTG AGGACGATCAAGAGAGGCGGACATCCCATTTTTACCTAAAACCTTAAGATGTTGAGTTTTATGAGTCACCTCCCTTGAAA TATCTTCACCTCACTCAAATTTGGCCACAAAGATTGAGCATTGAGTGGTGAACTATTGTGCCTTTCTTGAAGGGGGAGAG GCCGGAGAGCATTCTTGAACATGAATTACCTATACAGAGCACAAGATAACTGGTATTTGGATCCGGATTCCCCCTGCAGT CAAAATTTCCTAAATGGCTGGGATTTGAAGTGACAATGATACATATATAATTGATTTCTTGAAATTCGAATGGTACGATC AAGGCCAGACAGCTATGAACCCATAGTTGCATTGACTAGAGATTTTTCACAGCAGGAAATCACCACATGTAGCAATTTTC TCAACATAAATTGAATCTTACTGGGTTGTCACAATGCTACCAATTTGTATGTTGTTTGGTTCCATGTGTACTTATTAATG ATACCTGAGTCCTGAACCATTAATTTGATTGAACAGATTTTGGAGCAACCTCAGGAAGTCAACCAAAACCAAACCTTTAT CAAGGCATTTCATCTGCTGGGGTTTCTCATGTTCATAAGAAGGCGAAGCGGAAAAAGACCAAGTCAACTTCCTCTCCCAA AGCTTCATCTGCTGCAACAAGGCAATCAAGAGCAGCAAGGACAAAAGCTACGTATTGTGAGAGAGAAGCAGCACCAATTG CTTAACTCAAGCAGGTTCAGTCAAGACAGTGAAGTTTGTGCAGAGAAAGAGATTTGACAACATTGTGAATAGCAAAAACC ATGCCCTTAGGGAAAGAAAGAAAATAGAGCCAGCTATCCTAATTCACTCAGAGAAAAACCAAATTACTTGCTAACAGGTT GGGAGAAAAACAGTGAAAAAAAAGAAAAATGTGGTTATTCTGGGTGATTGGATTGTGTGCGAGTGTTTGGTTTTTGTGAA TCATATCTAGACATTAAAATTATAATTCCTTTTGTTAGTTTTGCGGATTAAAACGAAGTCATGGAAAGAAACAGTGATCA ATGCTTATTTAAACAAGATAAGCATGGCAGTTGTAACTTGTAATTGATTATCTAGAGTAGAATGTTCGTCAGTGCTTTTA TGTTCTTGAATATTGAAATGGTTGAGGCCGAAGTGTGGGATTGGAACTTACAAGTGAGTTTTTTGAGGGGATATGTTCAC AAGAAATACCCAAAGATCGCTGTTATTATTAAACAATAACAAGAATGAGAGCAGTGTTATTAAACTCGGCTCGAACCGGC CGGTTCGACCGGTTGAACCGGGAACCGGACCCCTGTCCGGTTCGAGTCGAGCAACGGATTGGGGCTGCAATCAACTCGTG TTGAACCGGATTGAACCGGCCGGGTCGGCATAAAAACCAGTGACCCGGAGCTACGGTTGGACCGGTAAGTTTTTTTTATC ACAGGCTATATCAGGTCTTGAACATGCTAATTTTCAAATCTCCATTAAAATGCAGCACAAAAAATGCATGATTAGTAGCG GTCTCCAACAGACAACATGAAAGAAGAAATCACAGAAGTGGAGAAGATGAAACTTAATAAGATTTTATTATAAAACATCA CTGGCCATTGTGGCTCCACCTCCGCCACCGCACGACATCAATCGTCTCAGATATGTTGTTGGAAGCTGCAGAAGTAAAAA GGAAAATCTGAGTGGTGAAGAAAGGTGTTTGGCTGCGCAGCATTTTGGTTTGATCAAAGAATGTGACTAGATGAGGGTTA ATATTAGGGTTGCTATTAGTTGGGTCTAGTTTCCATCATGGCCCACACTTTGATTCATGTGATTTAATAAAAAATATGAC ATAGTGCACTGTATGGGCTTACGCCAGTTTTTCTGCAAGTGGCCCGTATAGTTTCCATGGCCTTATTTTAATTTGTTCTT TATCAATAAAAGCTCAAAACACAGGGCTATTTTTTAAATAAACATTAATTCATAATAAATTAAATATAG
CDS sequence (LotjaGi2g1v0458000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCAAGATTAAAGGGATCTGCAAAGGTTTCAAATACATTACTCAAATTTTTGTTGTGAAGGAGAGGGAGATGGA CATAGGGTATCCAACAGATGTTAAGCACGTGGCTCACATCGGATGGGATGGTCCAACAGGCTCTGGACCAAGCTGGATGA ATGAATTTAAAACAGCACCTGATTTTTCAACATCAATTGGTAGTTTGAGTGAGCGAAGAGACCCCAATGCTTCAACTATC ACCTCATCTCGCTCCGTCCAAGATTTTGGAGCAACCTCAGGAAGTCAACCAAAACCAAACCTTTATCAAGGCATTTCATC TGCTGGGGTTTCTCATGTTCATAAGAAGGCGAAGCGGAAAAAGACCAAGTCAACTTCCTCTCCCAAAGCTTCATCTGCTG CAACAAGGCAATCAAGAGCAGCAAGGACAAAAGCTACGTATTGTGAGAGAGAAGCAGCACCAATTGCTTAA
Protein sequence (LotjaGi2g1v0458000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATKIKGICKGFKYITQIFVVKEREMDIGYPTDVKHVAHIGWDGPTGSGPSWMNEFKTAPDFSTSIGSLSERRDPNASTI TSSRSVQDFGATSGSQPKPNLYQGISSAGVSHVHKKAKRKKTKSTSSPKASSAATRQSRAARTKATYCEREAAPIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 9.7E-62 | – | |
| PANTHER | 1 | 151 | 151 | 9.7E-62 | – | |
| Gene3D | 22 | 121 | 100 | 4.2E-6 | ||
| CDD | 26 | 59 | 34 | 2.61656E-8 | – | |
| Pfam | 27 | 65 | 39 | 6.0E-10 | ||
| SMART | 28 | 59 | 32 | 6.8E-6 | ||
| ProSiteProfiles | 28 | 41 | 14 | 8.767 | ||
| MobiDBLite | 63 | 107 | 45 | - | – | |
| MobiDBLite | 63 | 156 | 94 | - | – | |
| MobiDBLite | 126 | 142 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0458000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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