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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0458900 |
| Transcript ID | LotjaGi2g1v0458900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G33740.1 myb-like protein X; Swiss-Prot: sp|Q9NU22|MDN1_HUMAN Midasin; TrEMBL-Plants: tr|G7K0Z8|G7K0Z8_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi2g1v0458900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95228551..95231078) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAGCAGAGTCGCATTTATATTTATATTTATATTTATATTTATTGAAATTGAAATTGATTTCCAGCAAAAACTCTATC TAGTCTAGTCTTTGATTGCTCACCTAAAAGTAAAACCCTTCTTCCCTTTTATTAATTCACCTGACTGACTTCACTTACCT GCTTCCGTCTTCTTCTTCTGTTTTGCTGCTCATTCACTCACTCAGGTCAGAATTCTTGTTCCTTTCATCTTCAATTACAC AGTCAACAACGCTTTGCTCTCTCTCTCTCTCTCTCTCTCAATGTTTTGTTTCTGTTTGCCTTTTCTATTTTGCTTCCCAG GGTTTTTCTCATTCTAGGGTTTTCTTCTCTTATCTCCTTTCGCTCATGCTTTTCCTCGATTCCATTTTGCGTTTAATTTC ATGCTATTTTTCTATTTTCTTTCCTTTTCTTGCTGCATGCGATTAATTCATTTGTTCAACTTAATTTATTCCGAAATCTG CTTTTGAGTTTATATAGTTCCCAAATACTGATTAGTTTGCTGGTCATTGCTCACTTAGTTTCTTAATTGAAAGCAGGTGG CCTGCCCTTGCTGTTTCAACTTAACCATGATCAAAAGGTCATCAAGTAGGAACCAAAGGTCCAAAGGCATCAAGGTCAAG CATGTTCTGCAGATTATTCTGTTGCTTGGTGTTTGCTTCTGGTTGATCTATCAGGTTAAGCGCTCTCATGATAAGAAGAA GGAATTTGATCAGACTGATGCCAAAGGGTCAGTTGTAACTCAGAATGCCTATCAGACTCCAAAAATTCACGCTAGAAAAT TTCTTCCGGATGAGGACAAAGTAAATCAAGATGAAAAGCACAGGGAAGAAGAGGAAGATGAGACTATTGTAGAGGATGAA GATAAGCTTGAACATGAAGAAGAAAGAAATGATCATGAGAGTGAACAAAAACCTGGACTCAGAGGAGCAGGAGAAGACCA AGCGGAAGATGAAAACAAAAGCGAAGAGACGGAAGACGAAAGAGGGGCCGGAGATGATGAGATAGATGAAAATGATCAAG ACAAACCAGATGTGGATGCTGACCGTGATGACGAGTTCATGGAGGAAGACAAAGAAGGGGATGACGAGAAGGAGGGGAGT GAAGACAGTGAAGATGAAGGAAAGGAGGCTTCACTTGAAAACCACAACAGTCATGAGGCTCGGGAGGAAAATTACAAGGG AGATGATGCTTCAAGTGCTGTCACTCATGATACTCATACAACTACTGCCGAAACTGAGACAGCTACCCTTGAAAATTCTG ATGCAATTGTAAACTCTGAAATGAGTATCACAAAATCAGAAAACAAGCCTAATTATACAGAGGACAGTAACAGGAATCAA CCTGGTTCAGATTTTAAGATTACAGAAGTTAAACTGACAGATGAGACTTCTTCCAATGCAACTTCTGTTAAAGAAACTGG AGACGCCAGTGTCTCCAACCCAGTGGATAGCTCAAATTTGAATAATATTTCCATGACATCCTCTGGTAATCACTCAGAAG CAAGCGGTAATTTGACAGTTGTGATTCCTGGAGCCAGCAATAACATGACCGTAACCAACACTTCATCTGAACACAATAAA GTAGAAATGTTTTCTGAATCAAGCCTGGCTCAGAATGGAACTGTGAACATAACAGTCACTGAGGATGCAAAAAATGTGCA GACAGAGGGATTCGAGCAGGTTGGAAATAGCATCTCTGAAGAAAACCGTCCAATTTCTAACTCAACAGTCCCTGTCAAAA CAGAAAACGGAGCTGCATCTGGAGCTGATTCTTCTAATGTAGAGGGTGGTGACATAGATAAGGCAACCAGATTTGTAGCG TATAATGAGACGGAGAACAAGGGTAACTCTGAAATGAGTGAAATAAGTAAGACTCAGAATAATTCTTATGTGAAGGAGAA CACCGGTGCCACTAAGGACGAGGAGTTCAACTTCAAGGGCACCACGCAAATATCAGACTCATCCTCTGCGAATGGAACTT TTGATTCAGTTGAACATCATGTCACTGATTCTCTCATCCTGAAGGAAGTGACAGAGGTCCGAACTGATCCTGATAGGTTG CCAGATATTAGAAATGTAGGAGATAATGGTGATGCAGCTGCAACAACCTAAACTTGTGATGGTGTTGTGTTCTAGGGAAG AGCTGGTAGAGTTTTTCTTCTGATGCATGTACTTGTCGCTTGACCTAAACAAAAAAGTAGTCAAGGCAAGAATGTCCAAG GTACAAATGTAGGCTAGTTATATTCATACCAATGTATGGTTACGTATAATTAATCTCTCTTCCACTATCTGGTGCTGCTG TTTTCTCATCTTTTTAGTTGTGGTAGGGCCTGTTTGATAACTGTTTCCAAAACAGTTTTCAGTTTTTAAAAACTGAAAAT TTGTTTGGTAAGACCTGTTTTCAAAATTTTCAAAAACAGTTTTTGAAAACAGTTCTCATTTTCAGTTTTTAAAACTAAAA AACCAAAACAGGTAAAAGATGTTTTCAGTTTCAGTTTTTAGTTTTCAG
CDS sequence (LotjaGi2g1v0458900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAAAGGTCATCAAGTAGGAACCAAAGGTCCAAAGGCATCAAGGTCAAGCATGTTCTGCAGATTATTCTGTTGCT TGGTGTTTGCTTCTGGTTGATCTATCAGGTTAAGCGCTCTCATGATAAGAAGAAGGAATTTGATCAGACTGATGCCAAAG GGTCAGTTGTAACTCAGAATGCCTATCAGACTCCAAAAATTCACGCTAGAAAATTTCTTCCGGATGAGGACAAAGTAAAT CAAGATGAAAAGCACAGGGAAGAAGAGGAAGATGAGACTATTGTAGAGGATGAAGATAAGCTTGAACATGAAGAAGAAAG AAATGATCATGAGAGTGAACAAAAACCTGGACTCAGAGGAGCAGGAGAAGACCAAGCGGAAGATGAAAACAAAAGCGAAG AGACGGAAGACGAAAGAGGGGCCGGAGATGATGAGATAGATGAAAATGATCAAGACAAACCAGATGTGGATGCTGACCGT GATGACGAGTTCATGGAGGAAGACAAAGAAGGGGATGACGAGAAGGAGGGGAGTGAAGACAGTGAAGATGAAGGAAAGGA GGCTTCACTTGAAAACCACAACAGTCATGAGGCTCGGGAGGAAAATTACAAGGGAGATGATGCTTCAAGTGCTGTCACTC ATGATACTCATACAACTACTGCCGAAACTGAGACAGCTACCCTTGAAAATTCTGATGCAATTGTAAACTCTGAAATGAGT ATCACAAAATCAGAAAACAAGCCTAATTATACAGAGGACAGTAACAGGAATCAACCTGGTTCAGATTTTAAGATTACAGA AGTTAAACTGACAGATGAGACTTCTTCCAATGCAACTTCTGTTAAAGAAACTGGAGACGCCAGTGTCTCCAACCCAGTGG ATAGCTCAAATTTGAATAATATTTCCATGACATCCTCTGGTAATCACTCAGAAGCAAGCGGTAATTTGACAGTTGTGATT CCTGGAGCCAGCAATAACATGACCGTAACCAACACTTCATCTGAACACAATAAAGTAGAAATGTTTTCTGAATCAAGCCT GGCTCAGAATGGAACTGTGAACATAACAGTCACTGAGGATGCAAAAAATGTGCAGACAGAGGGATTCGAGCAGGTTGGAA ATAGCATCTCTGAAGAAAACCGTCCAATTTCTAACTCAACAGTCCCTGTCAAAACAGAAAACGGAGCTGCATCTGGAGCT GATTCTTCTAATGTAGAGGGTGGTGACATAGATAAGGCAACCAGATTTGTAGCGTATAATGAGACGGAGAACAAGGGTAA CTCTGAAATGAGTGAAATAAGTAAGACTCAGAATAATTCTTATGTGAAGGAGAACACCGGTGCCACTAAGGACGAGGAGT TCAACTTCAAGGGCACCACGCAAATATCAGACTCATCCTCTGCGAATGGAACTTTTGATTCAGTTGAACATCATGTCACT GATTCTCTCATCCTGAAGGAAGTGACAGAGGTCCGAACTGATCCTGATAGGTTGCCAGATATTAGAAATGTAGGAGATAA TGGTGATGCAGCTGCAACAACCTAA
Protein sequence (LotjaGi2g1v0458900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKRSSSRNQRSKGIKVKHVLQIILLLGVCFWLIYQVKRSHDKKKEFDQTDAKGSVVTQNAYQTPKIHARKFLPDEDKVN QDEKHREEEEDETIVEDEDKLEHEEERNDHESEQKPGLRGAGEDQAEDENKSEETEDERGAGDDEIDENDQDKPDVDADR DDEFMEEDKEGDDEKEGSEDSEDEGKEASLENHNSHEAREENYKGDDASSAVTHDTHTTTAETETATLENSDAIVNSEMS ITKSENKPNYTEDSNRNQPGSDFKITEVKLTDETSSNATSVKETGDASVSNPVDSSNLNNISMTSSGNHSEASGNLTVVI PGASNNMTVTNTSSEHNKVEMFSESSLAQNGTVNITVTEDAKNVQTEGFEQVGNSISEENRPISNSTVPVKTENGAASGA DSSNVEGGDIDKATRFVAYNETENKGNSEMSEISKTQNNSYVKENTGATKDEEFNFKGTTQISDSSSANGTFDSVEHHVT DSLILKEVTEVRTDPDRLPDIRNVGDNGDAAATT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 512 | 512 | 9.9E-137 | – | |
| PANTHER | 1 | 512 | 512 | 9.9E-137 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 20 | 37 | 18 | - | – | |
| Phobius | 20 | 37 | 18 | - | – | |
| Phobius | 38 | 514 | 477 | - | – | |
| MobiDBLite | 45 | 315 | 271 | - | – | |
| MobiDBLite | 69 | 88 | 20 | - | – | |
| Coils | 87 | 114 | 28 | - | – | |
| MobiDBLite | 100 | 126 | 27 | - | – | |
| MobiDBLite | 127 | 185 | 59 | - | – | |
| MobiDBLite | 186 | 211 | 26 | - | – | |
| MobiDBLite | 212 | 315 | 104 | - | – | |
| MobiDBLite | 379 | 401 | 23 | - | – | |
| MobiDBLite | 379 | 408 | 30 | - | – | |
| MobiDBLite | 494 | 514 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0458900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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