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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0459200 |
| Transcript ID | LotjaGi2g1v0459200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thymocyte nuclear protein 1; TAIR: AT2G14660.1 thymocyte nuclear-like protein; Swiss-Prot: sp|Q91YJ3|THYN1_MOUSE Thymocyte nuclear protein 1; TrEMBL-Plants: tr|I1JAX2|I1JAX2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0459200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95303864..95310135) extracted from Lotus japonicus Gifu genome v1.2.
GAGGGAGTTAGTGAGTGTGTGTGAAATTTGAAAGAGAGAGAGAGAGATAGAGAGAGTGAGAAAGATGGGAAAGGAGAAAA ATAGGTTTCTTCTGAAAACGGAACCGTCGGAATGGTCGTGGGAAGATCAAGCAGCCAACGGAGGTTTATCCAACTGGGAT GGTGTCAACAACAAGCAAGCTCAGAAATACCTCAAGTCTATGTCACTCCACGATCTCTGCTTCTTCTATCACTCCGGCCC CAAGGCCCGTCGTGTCGTGGGCGTTGTTTCCGTCGTCCGGGAGTGGTACGAAGACGGACACGGCGGTGGAGCGGTCGACG TGAAGGCGGTCGGGGAGATGAGGAGGCCGGTGGACTTGAAAGAGATGAAGCATTTCAAGGAATTCGCTCTGTTGAGGCAG CCTAGGCTTTCAGTTGTCCCTGTTCCCGACCACATTTGGGACCAAATCTGTGCTTTGGGTGGCGGCTATCATGGAGATGG AGATGGAGATGGAGATGGAGATGGTGATGCTGATGCTGATGCTGACGGTGACGGTGATGACCATGACCACGAATCGCACC TTGTCAGTTAGGTATGTAAATCAATTGACAACACCTTCTTCAATGGAGTTTTGAATTAATATTGTTGTTGTTCATTGCTG AATTCCCAGAGATTGCATTGCAACCCTAACCTAGCTGAATCTTAGGTTGTGTTTAAATTATATTTACTGTAAGGGATAGG TTAGGAGCATCTTTGTTGCCCTTTGAACAAATTTGATGGTTAGGTTAGGCCTTGTTGGTTTGGGCCACCAAAAACTGGAC AGCCCTGGCTACTGACAACATAGTTCTGATGCATACATATTGTCTGGTGAATTGAGTAAATGATTCTTCCAGCCATATTG CTCTTAATGATTTAATGCTTACAAGCTGTTTGAAGAAATAACTGAGAGACTTTTATTGTAGTTTCCATTGAGGTTAGCAA TGAATAATTGAAGCTTCTTTATCTTGTTTAGCTCAATTGTTTGATATGTGAGTCTTCCATGATTTGAGGTCTTGAAAATG GCTAATATCTTAGCTACTCTTGCTTGAGCTTCTTAAAGTCTTAGATGTTTGCTGGATATGTGGGTTTTCCCTTTATGTTG GGTATGGTTTTTGGTGACAGGAGAAGAATTTAGTGTCTTCTCTTTGATCATTTGTTTGTTAAAAGCTTGCACCTAAAATC TGCATTTGAACTTGACTCAGTGTTTATCTTAATTGCTGCTTACCTGTTAGATTCTGAGTTACCTTGCTGTCCAATTGTTC ATACTTTGGTCGATGGCTGTGTAAAGCTAGTTTGCTTCTACATTAAATATTGTTTCTGTACAATCTGTTCAGATGATAGT GATCTTCTTTTATAATTGTACATTTCGTACTCTTACATATAAAATTCCAATTGGTTATTTATGAAACTCCAGATTTTCTT TTGATTATGGTACTTTGAGGTACAATCATGTACCCTTAATTCAATGTACTTTTGGAAAGTGTTTAATTTTAGGGGTTATT CTATATCTTTACATGAATCTGTGCTGCTTCAATCTTGATGAATATGAATAATCTTTTTGGATTGGTTCAATCAGATTTTT GGATTAGGGGTTATTCTATATCTTTATATTAATCTGAGCTGCTGCATTATTTTTGGATTGATTCAATCAGATTCACAATA TTCTAGAAAACAAAAACGAATGAAACAAATGATAATGGTTATATAGGGAAATTTATAGTATGACTTAGTTTAGAAACCAT TACAAAGCAATTGTAAATGAAGATTTATACTTAAGTTTCTTTTGCTGAGCCATTGGTGAACATGGACCACACTTTGAACA TGTATGAGAGAGTCTTTTTGCATCGAATCCATTCCTTTACCTTACCCTTTTCACATTAATTGTTAATAAACCCAAAGCAT TATTATCTTAGACCCTTAGACACAAAAACAAACAACTAATAAACATCTAAAGTCTTCACAATAGATATATAGGAGTACCT TGTGAACATGCAAGGCTTCTTGAACACTAGCATCATTTGCCCAAATGTAAGATAGTGCATACTTAAAATACTACACAAAC AAGACATAATACCATTTAATAATTATTCAACCAAATTACCAGACCAAAATGAATCCATACATTTAAAAAAGATAAATATT ATGGAGTAAGGACTAGGGAGGAGAGGGTTCATCTTTACCGGACACCAAAACTTTGGAATTCTTAGTGGGGGAGATGCAGG ATGTTGGCCATTTTCTTCAAGTAATCTTTGCCCGTAATGATGGGGAGATGCAGATACACAGTTTGGTAGCAAAACCTGAC CGCTCAATAAATCTGACACACTACAAATAAAAAAGGTAGTGTAGGTGTAGGCTTAGGTGTCGGTGGGGTGTTGGTAAAGA CTTAGGTGCAAGTGTAGATAGGTGTGTAGGTGTAGACTTAGGTTTAGGTGTATATGTATATATGCATGTGGGTTTTGTGT GTACGTTTGGGTGTAGGTGTATAGATGCATGTGGGTGTAGGTGTATGTATGCATGTCGATATAGGTGTATGTTTGGGTGT AGGTGTAGGTGTATGTAAGAGATATGAGAATATTTTTTTATAAAATATGTAACTCGTAAACCTAATGCCCTAAGATTTTG GACAAGATGTCACTATAAAGAATTAATAGCTTTGGGTGTAGCCGTAGCCTTTGGGGTATTGTAGTTGTGGGTGTAGGTGA AGGTGAGGGTGTACGTGTAGCTTTGGTGTAGGCACATGCTTAGGGGTAAGTGTAGGTGAAGGTGGGGGTGTGTGTGAGGG TGCAGGCTTAGGCTTAGATATATGTCTGAGATTTGAGAATAATATTTTTTTTATAAGAGGTGTAACTTATAAACCTAATG CCGTAAGATTTTGATTAAGATGCCACTACCAAAAATTAATAGCATTGGGTGTAGCGTAGGCATAAGGGTAGATGTAGGTG AAGGTGTGGGTGTGGGTTTAGGTGTAGGTGGGGTTGTAAGTGCAGACTTAGGTGTATGTGTACGTACGCATATTGGTATA GGTGTAACTTCGGGTCTAGGCGTTGGCTTATGAGTAGATGTAGGTGTAGCTGACGATGTGGGTGTAGGTGTATGTAAGAG ATGTGAGAAGAATATTTTATTAGAAATGTAACTTATAAACCTAATGGCCAACAGTTTTGGGGAATATGTCACTAACAAAA ATTAATAACTTTGGGTGTAGGCGTAGGCTTAAGGGTATGTGTAGGTGTATGTAAGAGATTAGAGAATAATATTTTATATG AGATGTTACTAACGAATCTAATGCCCTAAGGTTTTGGGTAAGATGTCATTAACAAAAATTAATAGCTTTGGGTGTAGGCG TAGGCTTAAGGGTAGGTGAAGGTGAAGGTGTCGGTGTGGGTGTAGGTGTAGGTGTATGTAAAAGATGAGAGAAGAATGTT CTATAAGAGATGTGACTAACAAACCTAATGCCCTAAGATTTTGGGTAAGATGTCACTACCAAAAGTTAATAGCTTTGGGT GTAGGCGTAGGCTTAAGGGTAGGTGAAGGTGTAGGTGGCGGTGTGGTTGTAGGTGGGGGTTGTAGGTGTTGACTTAGGTG TAGTGTATGTATGCTTGTTGGTATAGGTGTAGGTTTGGGTGTAAGTGTATGTAAGAGATGTGAGAAGAATATTTTATTAG AAATGTAACTTATAAACCTAATGGCCAACAGTTTTGGGGAATATGTCACTAACAAAAATTAATAACTTTGGGTGTAGGCG TAGGCTTAAGGGTATGTGTAGGTGTATGTAAGAGATTAAAGAATAATATTTTATAAGAGATGTTACTAACAAATCTAATG CCCTATGGTTTTGGGTAAGATGTCATTAACAAAAATTAATAGCTTTGGGTGTAGTCGTAGGCTTAAGGGTAGGTGAAGGT GAAGGTGAAGGTGTTGGTGTGGGTGTAGGTGTATGTAAGAGATGAGAGAAGAATGTTATATAAGAGATGTAACTAACAAA CCTAATGCTCTAAGATTTTGGGTAAGATGTCACTACCAAAAGTTAATAGCTTTGGGTGTAGGCGTAGGCTTAAGGGTAGG TGAAGGTGTAGGTGGCGGTGTGGTTGTAGGTGGGGGTTGTAGGTGCTGACTTAGGTGTAGTGTATGTATGCATGTTAGTA TAGGTGTAGGTTTGGGTGTAGGTGTATGTAAGAGATGTGAGAAGAATATTTTATTAGAAATGTAACTTATAAACCTAATG ACCAACAGTTTTGGGGAATATGTCACTAACAAAAATTAATAACTTTGGGTGTAGGCGTAGGCTTAAGGGTATGTGTAGGC GTATGTAAGAGATTAGAGAATAACTTTTTACAAGAGATGTTACTAACAAATCTAATGCTCTAAGGTTTTGGATAAGATGT CATTAACAAAAATTAATAGCTTTGGGTGTAGGCGTAGGCTTAAGGGTAGGTGAAGGTGTAGGTGTGGTTGTAGGTGTAGA CTTAGGTGTGTAGGTGTATGTATGCATGTTGGTACAAGTATAGGTTTGGGTGTAGGTATAAGTAAGAGATGTGAGAATAA TATTTTATTAGAGATGTAACTTATAAACCTAATGACCTACAGTTTTGGGGAAGATGTTACTAACAAAAAATTAATAGCTT TGGGTGTAGGTGTAGGCTTAAGAGTAAGTGTAGGTGGCAGTGTGGATGTGGGTGTAGGTGTAGGTGTATGTAAGAGATGA TGGAAGAATATTCTATAAGAGAGGTAACTAACAAACCTAATGCCCCATGGTTTTGCGTATAATGTCACTAACAAATATTA ATAGCTTTGGGTGTAGGCGTAGGCTTAAGGGTACGTGTAGGTGTAAGTGTATGTAAGAGGTGAAGAGAATAATATTTTAT AAGAGATGTAACTAACAGACCTAATGCCTATGGTTTTGCGTATAATGTCACTAACAAAAATTAATAGCTTTGGGTGTATG CGTAGACTTAAGTGTAGGTGTAGGTGTAGGTGAAGGTGGGGGTTTAGGTGGAATTGTGGGTGTAGGTGTAGGCTTGATCT GCTGATGTAGAGTCTGACATCACCCAACCTTGTGCAGCACTTGTTAGATAGGAGAAACTTGTGTCCACCTGCGAATCGAG AAATATAATGCCTAGCATTCTGAAATAAATAATGTAGATTAAAATCTATTAACACTCTTTGATATGATCATTTATACGAG AAAAATTAAAGAGTTACCTTTGTCCATGTATTTGGATAATATGACGATTTTGGTTATCCCTCTATGTAGTGATTAAAATC AAAGGACAGGACCTGTTCCATAAATAAGTCCATTGAAAGGATAGCAACCAGGGCCTCCTGATAACCAAAGAAGTAGAGGG TCTTGTTGAGGATCTCCTTGTGACTCGATGAAGTAGTAGAATAGTTCAGAGTCATTGACGCTTATGTATCTGAACATACA TTAATTATTAAAGCAATATATATATATCAACATTTTCTTACAGAAAAAAAAGGTGCAAATTTCAGTGAAGCATTTACATT TAACACTGAACTGACCCTGTTTGAACTAGGAAGGGTAGCTCCCCAGGGAATCCTGGTAAGGTTTTGACAATGGCTTTGGA GGCAATTACTGATGAGTTGGATAAGACCAAACAAGAGATTTATTCCCCAAAATGCCATTTTGATGATGTACTTGTTATTT CCATAATTTAGTAAGCAAGTACAAGTAGTAGTAATGGCTAGGACAAGGTGTCACCATTGCTGATGCTGCAATGTCTCACC CAATCGATATTGCAATGTCAATAAATGATATATGAGAGGCTCAACAATCACAGCCACACTCTGATACATTACAACAGAGT TTCTGGTGCACCTATTAGTCCAATGGAGACTCATACAATACAGGAGATTTTTTCTGCTGCACCCACTCTTCAAGTATTTT ATACTAAAGAAAAGTAGGAACTACAATTTTACTGAGGTTAAGAATATGCTTTGCCTTCTTTTTAATTCATTGAAATGACC TTCAACACTTTCAGGATAGCCTCTGCATTTCTTGTGACTTGACTCTTGTGGTTTTTGTCAGCGTATTCGGGCCACTGTCT CATATTTGGCATTTCTTGCACTCTCGATTATATGAGCCATGTTTGTGTGTTATCTAGTTAGGATATATTTGCATGAAGAA AACAAGAGGTACACAAAAAATATTGGCAGTACACCAAAAAATCTCTTGCTGCTAGAAGTCAAGGTTTGTAAGCAAACTTT TGGAAGATTATTTTTTATTTTATTTTTGGAAG
CDS sequence (LotjaGi2g1v0459200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAAGGAGAAAAATAGGTTTCTTCTGAAAACGGAACCGTCGGAATGGTCGTGGGAAGATCAAGCAGCCAACGGAGG TTTATCCAACTGGGATGGTGTCAACAACAAGCAAGCTCAGAAATACCTCAAGTCTATGTCACTCCACGATCTCTGCTTCT TCTATCACTCCGGCCCCAAGGCCCGTCGTGTCGTGGGCGTTGTTTCCGTCGTCCGGGAGTGGTACGAAGACGGACACGGC GGTGGAGCGGTCGACGTGAAGGCGGTCGGGGAGATGAGGAGGCCGGTGGACTTGAAAGAGATGAAGCATTTCAAGGAATT CGCTCTGTTGAGGCAGCCTAGGCTTTCAGTTGTCCCTGTTCCCGACCACATTTGGGACCAAATCTGTGCTTTGGGTGGCG GCTATCATGGAGATGGAGATGGAGATGGAGATGGAGATGGTGATGCTGATGCTGATGCTGACGGTGACGGTGATGACCAT GACCACGAATCGCACCTTGTCAGTTAG
Protein sequence (LotjaGi2g1v0459200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKNRFLLKTEPSEWSWEDQAANGGLSNWDGVNNKQAQKYLKSMSLHDLCFFYHSGPKARRVVGVVSVVREWYEDGHG GGAVDVKAVGEMRRPVDLKEMKHFKEFALLRQPRLSVVPVPDHIWDQICALGGGYHGDGDGDGDGDGDADADADGDGDDH DHESHLVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 138 | 136 | 4.3E-51 | – | |
| PANTHER | 3 | 138 | 136 | 4.3E-51 | – | |
| Gene3D | 5 | 143 | 139 | 3.1E-36 | – | |
| SUPERFAMILY | 5 | 133 | 129 | 3.23E-38 | ||
| Pfam | 7 | 130 | 124 | 1.7E-34 | ||
| MobiDBLite | 136 | 168 | 33 | - | – | |
| MobiDBLite | 143 | 157 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0459200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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