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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0460000 |
| Transcript ID | LotjaGi2g1v0460000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | EPIDERMAL PATTERNING FACTOR-like protein; TAIR: AT4G14723.1 EPIDERMAL PATTERNING FACTOR-like protein; Swiss-Prot: sp|Q2V3I3|EPFL4_ARATH EPIDERMAL PATTERNING FACTOR-like protein 4; TrEMBL-Plants: tr|A0A0L9T7S9|A0A0L9T7S9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0460000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:95361430..95362203) extracted from Lotus japonicus Gifu genome v1.2.
ACTAGTACAAGACAATATATATCAGAAGGAACAGGCCAGGGTGTTATTCATAATCATAATAACGATGGAACCAACACCAA AGAAGCCTAAAGCAGCACTCATTGTCTTCCTCTTCCTCCTCCTTCTTATCCTCAACAACCACACTTGCCAAGTCCATTCC CGAAACCTTGCAATTGCAAACTCCCCTTCTCATGCACCGGTGAGCGCATTCATGCTAATTATTTTACTACCGTCCCTTTT ATTTATTAATGAATTTGAAAAACCATTTTTAATTAATTTCAGGGTCCTGCAACAGCAACAGCAACATATAAGAATAAGAG AAGTTTTGATGGAAGGATTAGGAAAGCAAATCCAATTCCAAGGCAAGGCTCATTTCCAGCTACAATATGCCATTCAAAGT GCAACCAATGCAGGCCTTGTGTTCCAGTTGAGGTGTCAATCAGAACCACAATGGTAGTTGAAGAGAACCAGTACTATCCC ATAGCTTGGAGGTGTATGTGCCACACCAACATCTTTTCACCTTAATTAGGATAGGACAACATTCATTTCAAATTTTTAAT GTTCTTTAATTTGACAAATATTATATGATGCTATGTTCAGTGTTGTGGTATGTTACTTTACCATTGTTACAGATCCTTAC TTTCTGCAGCTCCCCATATCCCATCAGATCTTGTCTTATAATTGATTTTTAACCAAAATTGAAAGGCTTTAATGCCCAGA AAAGAACTGAGGCAACATCGATCTCGGAACTGAACTATGTGACGAAGATAATGG
CDS sequence (LotjaGi2g1v0460000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCAACACCAAAGAAGCCTAAAGCAGCACTCATTGTCTTCCTCTTCCTCCTCCTTCTTATCCTCAACAACCACAC TTGCCAAGTCCATTCCCGAAACCTTGCAATTGCAAACTCCCCTTCTCATGCACCGGGTCCTGCAACAGCAACAGCAACAT ATAAGAATAAGAGAAGTTTTGATGGAAGGATTAGGAAAGCAAATCCAATTCCAAGGCAAGGCTCATTTCCAGCTACAATA TGCCATTCAAAGTGCAACCAATGCAGGCCTTGTGTTCCAGTTGAGGTGTCAATCAGAACCACAATGGTAGTTGAAGAGAA CCAGTACTATCCCATAGCTTGGAGGTGTATGTGCCACACCAACATCTTTTCACCTTAA
Protein sequence (LotjaGi2g1v0460000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPTPKKPKAALIVFLFLLLLILNNHTCQVHSRNLAIANSPSHAPGPATATATYKNKRSFDGRIRKANPIPRQGSFPATI CHSKCNQCRPCVPVEVSIRTTMVVEENQYYPIAWRCMCHTNIFSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| SignalP_EUK | 1 | 32 | 32 | - | – | |
| TMHMM | 10 | 27 | 18 | - | – | |
| Phobius | 10 | 23 | 14 | - | – | |
| PANTHER | 11 | 125 | 115 | 1.2E-32 | – | |
| PANTHER | 11 | 125 | 115 | 1.2E-32 | ||
| Phobius | 24 | 32 | 9 | - | – | |
| Phobius | 33 | 125 | 93 | - | – | |
| Pfam | 74 | 125 | 52 | 7.2E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi2g1v0460000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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