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LotjaGi2g1v0462000.3

Overview

Field Value
Gene ID LotjaGi2g1v0462000
Transcript ID LotjaGi2g1v0462000.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Mitochondrial presequence protease; TAIR: AT3G19170.1 presequence protease 1; Swiss-Prot: sp|Q9LJL3|PREP1_ARATH Presequence protease 1, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UDY2|A0A072UDY2_MEDTR Presequence protease; Found in the gene: LotjaGi2g1v0462000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:95521964..95528538) extracted from Lotus japonicus Gifu genome v1.2.

TTGATGCAGGCTCTTTTCCCAGACACTACCTATGGAGTTGACAGCGGAGGTGATCCACAAGTTATTCCTAAGTTGACATT TGAGGAGTTTAAGGTTTGTTTTGAGAATCATGTGAAATGGTTATATAGAGATAACTAATTTCCACTAGACTTTTGTTTGG GTGTTAGTCATTTGTATGATCCTACCAACATTGTTTGGTTTGGGTAGTATGATGGGGATAATTGTATATTTTCATACACA CTTGTACCTTGTTAAACTTTTCACTTTCATTATTTCATATAGTCTATAGTCTATACTCTATTGTAGATCTCAGCAAGAGT ATATGCAAATTTAATTGTTTGTTTTAAGAAAGATTTCATTTTAACCTTAATTGACAGGAATTTCATCGCAAGTATTACCA TCCCAGCAATTCACGGATATGGTTTTATGGAGATGATGATCCAAATGAGCGCCTCCGCATCCTGAGTGGTAAGAGATTTA GTTTAACTTGCTTGAAAGGGCTTTTGATGAAATGCGCCGACTTAGGATGAATGACTAAAGCCTATAGCCTTACTTGTTGT CCAAACCCATTCTATGACAATGATCAGGATATTGTTGGGTGACCTTGAGGGACTCATTCGGTTCTCACAGAAGGCCCTTC TGTGTAGTGGTCTTATCCAAGCAAGCCATCATTCTGGAAAATGATTAGGATATTGTTGGGTGACCTCGAGGGAGCTCTTT CAGTGCTCTGTACAGAAGGCCCTTCTGTGTAATGGTCTTATCCAAGCAAGTCATCATTCTGGGCAATGATTACGATATTG CTGGATGACCTCGATGGAGCTCTTTTGATGCTCTGTACAGAAGGCCTTTCTCTATAATGGTCGTATCCAAGCAAGTCAGC ATTCAGCAACCTGCTACAGTTCCCTTTGTGCATAATTTTTAAGTAATATGTTAAACATATTTTTTTTCACTTCTGAAATT ACATGAATATTTCATGTTAAGAATTGGAATAGGCATGAAGTTCAGACATAATTCTTTAGTAATATGTTGAACTTGTTTTT TTCACTTCTGAATAATATTCCCATGTTGAAGAATTGGAATAGGCATGACTGCATGAGGTTCTATAGAGTTCCCCTTTGAA GATCCTATATTTTCCTAGAGCTTCCCTTATATGTCTAGATTTATCTTCCTTTGGATTTATTTATTTTACTTCTTATATTT CTGTGTTATTATACTTTTTTTGTACACTGCCATTTTTTGTTGCTAAGTCTAACTGAAAGAATAGTGTTGGCATGATTGCA CTGTTTTTTGTTCATGTTTTATATTTCAGACCAGTTATGAAAGATAATTTGAGTTCAGATTGTAGCCCTTACTCACTTAC TTTTGCCTCTTCTCTATTGTCCAGAGTATTTGGACATGTTTGATGCAAGTTCGGCCCGAAATGAATCAAAAGTTGAAGCA CAGAAACTATTTTCAAAGCCAGTCCGGGTTGTTGAGACATATCCTGCAGGGGACGGGGGTGATTTGAAGAAGCATATGGT CTGCCTCAACTGGCTGCTCTCTGATAAGCCCTTAGACTTGGAAACTGAGCTAACACTTGGATTTCTGAATCATCTTCTGT TGGGCACTCCGGCTTCACCACTGAGGAAAATTTTGCTAGAAAGTGGATTAGGCGATGCCATTGTTGGTGGTGGGCTTGAA GATGAACTACTCCAGCCTCAATTTAGTATTGGAATGAAGGGTGTTTCTGAAGATGACATTCATAAGGTAGAAGCACTGAT CACAAGTACACTTAAAAAGTTGGCAGAAGAAGGTTTTGATACAGATGCCATTGAGGCTTCTATGAATACAATTGAATTTT CTCTCAGGGAGAACAACACCGGGTCATTTCCACGTGGCTTGTCCCTCATGCTACGGTCCATTGTAAGATGAGATCAATTT TTTTTGGTGTGGAAAATGGGCATCATTTGCTAATCTAGTTTTATAAGTGGTTTTGTTTGTATATGTAGGGTAAATGGATT TATGATATGAATCCCCTTGAGCCATTGAAGTATGAGGGACCTCTTCAAGACCTAAAATCTCGAATAGCAAAGGAGGGCTC CAAATCTGTGTTCTCTCCTCTGATAGAAAAATTAATCTTGGACAACCCTCATCAAGTTACTGTGGAAATGCAGGTACTCA CTTTGGCCTTGGAAACCTGTGTTTGAGGTAATCCACCCAACATGTTATGTTGGTTATTGATGCAAATCTTTCCTTGTCAG CCTGATCCTCAAAAAGCTGCTGCTGATGAAGCCACAGAGAGACAGATATTGCAGAAAGTTAAAGCTAGCATGACAACAGA AGATCTGGCCGAGTTGACTCGTGCAACTCATGAGCTTCGGCTTAAGCAAGAAACTCCGGATCCACCAGAAGCTTTGAAAA CTGTTCCTAGCCTTTCTCTACAGGATATTCCTAAAGAACCTATTCATGTTCCCACCGAGGTTATCATTACTCTTTCCCTT GAGCGTGAGTCTTAGGTGTTTGCCTTTGTAATATTTGGAGACTGATGATGACTTGGATGCTGAATGTAGGTTGGGGATAT CAATGGGGTAAAAGTTTTGCAGCATGATCTCTTCACCAATGATGTCCTTTACACTGAAATAGTATTCGACATGAGTTCAT TGAAGCAAGAGCTTCTTCCTTTGGTTCCATTGTTTTGGTAATTATGCAACCTCAGAAGGATGTTTGATATTCTGTTTCCA TCCATCTATAGCTCCTAATATTACATGCATGTGGATTTCATAGATACCAATTTAAATTTGCAGTTAGTTATTTACCTTCC TTGGGTATGGCTTTCATGTTTTGAATTTCAAAATAAATCATTAGATTGTACTAACTTTCTTTTTCATATTATTATTTACA ACAAATCTTATTTTCTTTTTGATGTTTTCTTTCTTCTGTTCCTCATCGCTTATATACGAAGCATCTTCTAGATAGATAAA TTGCATCAAGCTGTAACTCTCCTATGTTACTTTTGACAGCCAATCATTGCTGGAGATGGGCACAAAGGACCTGACTTTTG TCCAACTAAACCAATTAATTGGGAGAAAAACTGGAGGAATATCAGTTTATCCCTTCACATCATCAGTGCGGGGCAAGGAA GATCCATGTAGTCACATGATTGTTCGAGGAAAAGCCATGGCTGGACGTGCTGAAGACCTTTATCACTTGGTACTTTTGTT TATTTAAATGTTCCCTATTTCAACACTCAATGCTTTTGATTATTAGTATGATATTTCAATTTTGGTAATTTAAAGCCTAA TATCATACTGTTACTTTAGGTTAATTCTATTCTTCAAGATGTCCAATTTACAGACCAACAGCGTTTCAAACAGTTTGTTT CCCAGAGTAGAGCAAGAATGGAGGTAATTATAAAAAAATATTGTGCGAATTGCGAAGAGATGAAAAAATGATGATAGGTG AATACTCAATATGCAAAATCTCCATACTGTTTGTCTATATTGTTAATTTTTGTCTATTTTCAGAATCGGTTAAGAGGCAG TGGTCATGGAATTGCGGCTGCAAGGATGGATGCAAAACTGAATGCAGCAGGCTTGATGGCAGAAAAGATGGGTGGTCTCA GGTTGGAATATTAAGATAGTGTTATGATCTACTGTGAGGGCACATTTACATATAGTTCTTAGTCATAGTATAGTAATAAT TTTTTATGACACTTCAGTATGACTATTATCTTTTTAAGGTTTTAAGTTTCATGATTCTCCTCTTTTAGTCTAATCTTTAT GTTTAATTTGGAAACATAAGTGTAATTCCTGTTGTTCTTTATTTTGGCATATTCTTAGTTACCTTGAATTCCTTCAAACT CTTGAAAAAAGAGTTGATCAAGATTGGGCTGACATCTCATCGTCTCTTGAGGAGATTCGCAAATCTGTATTTTCCCAGCA AGGCTGCTTGGTAAATATCACTGCTGATGCGAAAAATCTTAAGAACACGGAAAATGTTGTGAGCAGATTTGTTGATATGC TTCCCACTAGTTCTCCCATTGCAACAATTACTCCTTGGAATGTTAGACTTCCACTGACAAATGAAGCTATTGTGGTTCCT ACTCAGGTATTTCATTTTGTCATTCTTTGTGTACATAAATTTTTTCTGTTATGCACAGTCATAGTCCCCAAATTTCATTT CATTTTTTTTCTCTCATTACTTTTAATTTCCATTTCTATCAATAAATCAGTGTTTCTTTCTCTAGGTTAATTACGTTGGA AAAGCAACCAATATTTATGATACTGGTTATAAGCTTAATGGGAGTGCATATGTTATTTCTAAATACATTAGCAATACATG GTTGTGGGATCGTGTACGTGTCAGTGGTGGAGCTTATGGAGGTTTCTGTGATTTTGATACACATTCAGGTAAGTTCTATA CTTCTATTATATTTAGGCAGAATTGTTGAGTAGCAATGTAGCATCCTTGCAATCTTATCATTTTGTTTCTCTTTCTAGGA GTGTTCTCCTTCTTATCTTATCGTGATCCCAATTTACTGAAGACGCTCGATGTATATGATGGAACTGGGGATTTCTTAAG AGAATTGGAAATAGATGATGATACTCTAACAAAAGCCATAATTGGAACCATTGGGGATGTAGACTCATATCAACTTCCTG ATGCCAAAGGTTATAGTAGGTACGAATATGCGATAATTGATAGTTTGATACCTGTGGAGATTGTTTTCTATGAAATTTTG GTCCTTTTGCTGAATTACTAGAGGTTGCTTCAGTTATCGTTGCTTTTCTTCCTATACTTGCAAGTTATGCCTACTTTTCA TTTCATTTGCAGTTTGTTGCGGCACTTACTGGGTATCACAGAGGAAGAAAGGCAAAGAAGACGTGAAGAGATATTATCTA CTAGGTAAAGATTCTAATTATTGATTACTAACCCATGATCTGAACTTACACATTTTATGAATACATGACCATTTGATCCA TGCTATTGATAAAGCAAAATAATGCATTCTGATCTCACTGATTTTTTTGTATGGTAGTGAGCTATTAACTTAACTGAAAT GACTTTCTGAATCTGTAATCAATTTAAATTTTGTTCAATTTCACTTTTGGTTCCCCTAAGTTTGGATATGTATCCGTTTT TATTATACTCAAAAGGGTTAAAGGTCATATTAGTCCCTGTGTTTGTAAAAACGTTTGATTTTGGTCCCTCAGTCAAAAAA TCGCCAATAATTGTATTATAAACCGCCACTAACTGTAAAAAAAATCGCCACTAATCGTCATTTTTTAACTAAGGGACCAA AATCAAACACTTTTACAAACACAGGGACTAATATGACCCTTAACCCTACTCAAAACTCTCAAATTCTCAAAATGTTCATA AATTAAATTAAGGATTTTGTGAATACAAAAATTGAGAGAATGACAAAACTTGGATAGTTTTGAAAAAAAAATAGGAGGAT GGTCTAAACTAAGGGGATAAAAAATCTAGGGGTGCACATGGGCCGGGTCAACCCAATGAATTCATCCAACCCAATCCGAT CCAATAGTAAAAATACGGGTTGGATTGGGCGAACGGGTCAATCGGATGGATTTTGTTACGATCCAATCATCTTTGGATCG GATATCGGATTTCATAATAATCCATCCAACCCAACCCGAAATCCAATCATATAATAATAATATATTATTTAGTATATATT TTTAATAATTTTAATTTTTTCTAACCTACTAGTAGGGAATGTAATTTATGGATACTTGAAGTCCTACTATTTGAGTGATT TTAAGGAGACTTTGAGACTAATTTGTTTGTAATTACTCTTTATATTTAAAGACTTGAAGTACTAGTTTAGTTATGTGTTG CTGTATAGATGTGTGTAGACGCTAGTTATGAATTTATGATGTAATTGCATGTTAAAGACTTGAAAATTGAAATACTTGTT TTTTAATATTTTTTCAATATTTCAGATTTATTTTTATTTTAATATAGCGATCTAATCAATCCATCCAAACCAACCCGAAG ATTGTCGGATTGGGTTGGTTCGGGTTCGTAGGTGAAAATTCACGAAATCCAACCCAACCCAACCCAAACAGTTTTGATCG GTTCGGGTCCTGATTAGCTTGAAAATCCATCCAACCCAACCCATGTGCACCAATCAAGCATTTAAATTTCATAAGGGATA AATTTTGGTGTAAAGATTGCATGTTTAACATTTATTTTTTCTGTTCATGGAGACTAATCTTCCAGAGTATTTTGTTAGAC CTTTTGAAATATGGGTTATGCCTCCTTATTGTCGGTGCAAGGAGATGAAACAAAAAGGAATATTACTATTTCTGCATAAA AGTTCTATGTTACTGGCTGGGCATCTTGGTCCTGAGCTATCTACTTTGCACTGAATTAGATACTGACCTTTGAAACCATT TATTGTTCTTATTCTGTTTTACTGTTTCGCCAGTGTGAAGGACTTCAGAAATTTTATTGATGCAATGGAAGCAGTTAAGG ATAAAGGGATTGTGGTTGCAGTGGCATCTCCAGAGGATGTAGATGCGGCAAACAAAGAGCGTTCCAACTTCTTTCAAGTA AAGAAAGCCCTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0462000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGCTCTTTTCCCAGACACTACCTATGGAGTTGACAGCGGAGGTGATCCACAAGTTATTCCTAAGTTGACATTTGA GGAGTTTAAGGAATTTCATCGCAAGTATTACCATCCCAGCAATTCACGGATATGGTTTTATGGAGATGATGATCCAAATG AGCGCCTCCGCATCCTGAGTGAGTATTTGGACATGTTTGATGCAAGTTCGGCCCGAAATGAATCAAAAGTTGAAGCACAG AAACTATTTTCAAAGCCAGTCCGGGTTGTTGAGACATATCCTGCAGGGGACGGGGGTGATTTGAAGAAGCATATGGTCTG CCTCAACTGGCTGCTCTCTGATAAGCCCTTAGACTTGGAAACTGAGCTAACACTTGGATTTCTGAATCATCTTCTGTTGG GCACTCCGGCTTCACCACTGAGGAAAATTTTGCTAGAAAGTGGATTAGGCGATGCCATTGTTGGTGGTGGGCTTGAAGAT GAACTACTCCAGCCTCAATTTAGTATTGGAATGAAGGGTGTTTCTGAAGATGACATTCATAAGGTAGAAGCACTGATCAC AAGTACACTTAAAAAGTTGGCAGAAGAAGGTTTTGATACAGATGCCATTGAGGCTTCTATGAATACAATTGAATTTTCTC TCAGGGAGAACAACACCGGGTCATTTCCACGTGGCTTGTCCCTCATGCTACGGTCCATTGGTAAATGGATTTATGATATG AATCCCCTTGAGCCATTGAAGTATGAGGGACCTCTTCAAGACCTAAAATCTCGAATAGCAAAGGAGGGCTCCAAATCTGT GTTCTCTCCTCTGATAGAAAAATTAATCTTGGACAACCCTCATCAAGTTACTGTGGAAATGCAGCCTGATCCTCAAAAAG CTGCTGCTGATGAAGCCACAGAGAGACAGATATTGCAGAAAGTTAAAGCTAGCATGACAACAGAAGATCTGGCCGAGTTG ACTCGTGCAACTCATGAGCTTCGGCTTAAGCAAGAAACTCCGGATCCACCAGAAGCTTTGAAAACTGTTCCTAGCCTTTC TCTACAGGATATTCCTAAAGAACCTATTCATGTTCCCACCGAGGTTGGGGATATCAATGGGGTAAAAGTTTTGCAGCATG ATCTCTTCACCAATGATGTCCTTTACACTGAAATAGTATTCGACATGAGTTCATTGAAGCAAGAGCTTCTTCCTTTGGTT CCATTGTTTTGCCAATCATTGCTGGAGATGGGCACAAAGGACCTGACTTTTGTCCAACTAAACCAATTAATTGGGAGAAA AACTGGAGGAATATCAGTTTATCCCTTCACATCATCAGTGCGGGGCAAGGAAGATCCATGTAGTCACATGATTGTTCGAG GAAAAGCCATGGCTGGACGTGCTGAAGACCTTTATCACTTGGTTAATTCTATTCTTCAAGATGTCCAATTTACAGACCAA CAGCGTTTCAAACAGTTTGTTTCCCAGAGTAGAGCAAGAATGGAGAATCGGTTAAGAGGCAGTGGTCATGGAATTGCGGC TGCAAGGATGGATGCAAAACTGAATGCAGCAGGCTTGATGGCAGAAAAGATGGGTGGTCTCAGTTACCTTGAATTCCTTC AAACTCTTGAAAAAAGAGTTGATCAAGATTGGGCTGACATCTCATCGTCTCTTGAGGAGATTCGCAAATCTGTATTTTCC CAGCAAGGCTGCTTGGTAAATATCACTGCTGATGCGAAAAATCTTAAGAACACGGAAAATGTTGTGAGCAGATTTGTTGA TATGCTTCCCACTAGTTCTCCCATTGCAACAATTACTCCTTGGAATGTTAGACTTCCACTGACAAATGAAGCTATTGTGG TTCCTACTCAGGTTAATTACGTTGGAAAAGCAACCAATATTTATGATACTGGTTATAAGCTTAATGGGAGTGCATATGTT ATTTCTAAATACATTAGCAATACATGGTTGTGGGATCGTGTACGTGTCAGTGGTGGAGCTTATGGAGGTTTCTGTGATTT TGATACACATTCAGTGTTCTCCTTCTTATCTTATCGTGATCCCAATTTACTGAAGACGCTCGATGTATATGATGGAACTG GGGATTTCTTAAGAGAATTGGAAATAGATGATGATACTCTAACAAAAGCCATAATTGGAACCATTGGGGATGTAGACTCA TATCAACTTCCTGATGCCAAAGGTTATAGTAGTTTGTTGCGGCACTTACTGGGTATCACAGAGGAAGAAAGGCAAAGAAG ACGTGAAGAGATATTATCTACTAGTGTGAAGGACTTCAGAAATTTTATTGATGCAATGGAAGCAGTTAAGGATAAAGGGA TTGTGGTTGCAGTGGCATCTCCAGAGGATGTAGATGCGGCAAACAAAGAGCGTTCCAACTTCTTTCAAGTAAAGAAAGCC CTTTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0462000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQALFPDTTYGVDSGGDPQVIPKLTFEEFKEFHRKYYHPSNSRIWFYGDDDPNERLRILSEYLDMFDASSARNESKVEAQ KLFSKPVRVVETYPAGDGGDLKKHMVCLNWLLSDKPLDLETELTLGFLNHLLLGTPASPLRKILLESGLGDAIVGGGLED ELLQPQFSIGMKGVSEDDIHKVEALITSTLKKLAEEGFDTDAIEASMNTIEFSLRENNTGSFPRGLSLMLRSIGKWIYDM NPLEPLKYEGPLQDLKSRIAKEGSKSVFSPLIEKLILDNPHQVTVEMQPDPQKAAADEATERQILQKVKASMTTEDLAEL TRATHELRLKQETPDPPEALKTVPSLSLQDIPKEPIHVPTEVGDINGVKVLQHDLFTNDVLYTEIVFDMSSLKQELLPLV PLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPFTSSVRGKEDPCSHMIVRGKAMAGRAEDLYHLVNSILQDVQFTDQ QRFKQFVSQSRARMENRLRGSGHGIAAARMDAKLNAAGLMAEKMGGLSYLEFLQTLEKRVDQDWADISSSLEEIRKSVFS QQGCLVNITADAKNLKNTENVVSRFVDMLPTSSPIATITPWNVRLPLTNEAIVVPTQVNYVGKATNIYDTGYKLNGSAYV ISKYISNTWLWDRVRVSGGAYGGFCDFDTHSVFSFLSYRDPNLLKTLDVYDGTGDFLRELEIDDDTLTKAIIGTIGDVDS YQLPDAKGYSSLLRHLLGITEEERQRRREEILSTSVKDFRNFIDAMEAVKDKGIVVAVASPEDVDAANKERSNFFQVKKA L
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.830.10
1 70 70 1.6E-19 –
PANTHER
PTHR43016
2 801 800 0.0 –
PANTHER
PTHR43016:SF7
2 801 800 0.0 –
SUPERFAMILY
SSF63411
2 67 66 1.12E-13
IPR011249
Pfam
PF05193
23 209 187 2.2E-25
IPR007863
Gene3D
G3DSA:3.30.830.10
73 310 238 9.1E-84 –
SUPERFAMILY
SSF63411
80 344 265 3.12E-60
IPR011249
Pfam
PF08367
287 536 250 1.4E-74
IPR013578
SMART
SM01264
287 536 250 1.1E-97
IPR013578
Gene3D
G3DSA:3.30.830.10
319 773 455 2.6E-166 –
SUPERFAMILY
SSF63411
346 595 250 1.41E-72
IPR011249
Gene3D
G3DSA:3.30.830.10
354 604 251 2.6E-166 –
SUPERFAMILY
SSF63411
600 782 183 2.27E-36
IPR011249

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0462000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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