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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0002500 |
Transcript ID | LotjaGi3g1v0002500.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ap2-like ethylene-responsive transcription factor; TAIR: AT1G16060.1 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|U5GNH0|U5GNH0_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0002500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:347473..351927) extracted from Lotus japonicus Gifu genome v1.2.
CGAACTGTATGCAATTGCTTAACAAGTGCAGTGGTCCTCTCTTCTCTTGTTATGACTCAGCATTAACATTCAATTCAATT CATGGCTAAGAAGAAAGGCCTCAAAAACACTAGTACTAGTAATGCTATTGCTACTGCTACTAACACCGCCACCACGACCA CCACCACGAAGATGAAGAAGCGTTCACGCAAAAGCACCCCAAGAGACACACCATCACAAAGAAGCTCTGTCTACCGTGGC GTTACAAGGTTAGCTTGATCCATTCAATTCAATATATGCTACCTTTTTTACCCATCTTAATTGTCTCTTAAATTTACCTC TATTTTCTGCTCCAATATCTTATATAATACTAACATTTTCAGAGATATATATATCGGTGACAAAATGTGTATATCTATGG TTTTACATATAGGCATAGATGGACAGGTCGATATGAGGCCCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCA AGAAAGGAAGACAAGGTTCTTAATTAATACTTAGATCTTAATCTTAATGGTAGTTCTTCTATAATTTCCAATTTCTTTCA TTTATTCGATTTTTCATTATTTTCATGCCTCACCGTGTTTTTTATGGCGATGGAAAACAATTGGCTGCAGTATATTTAGG TATGATTTTCATTGACAAATCTTCATCTTTTTTAGTTGTTCAATTCTCTAATTAATTTTAATAATGAATTAAATGTGGGT ACGTACAAATTAAACTTGGGTGGTTTTGTTAGGGGCATATGACGATGAAGATGCAGCAGCACGTGCCTATGACTTGGCAG CATTGAAGTATTGGGGCCAAGACACCATCCTCAATTTTCCAGTACTTCCTCTGATCCCTTCAATTCAATGCTGATTATTG ACCAAAAAAAAGTCCAATGCTGATTTCATGATAATTTCAAACAAACTTTAATCTGTTCTTTGTTGTTGATGATCGATCAT AGTTATCAAATTATCAAGATGAGCTTAAGGAGATGGAGAATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGGTCT TTGTTTAGTTATAAAATGTGTATTGTACATTTATTATGTAGGTTAAAGAGTCATTTTTTAATGTAGTACTTTTTAGCCAT TTCTCACAAACTTTCATCTTTAATTTACAGAAAAAGTAGCGGTTTCTCTCGAGGAGTCTCCAAATATAGAGGCGTGGCAA GGTACCACATTAATTTCTGTTTTAGCAAATTTTGGTTTCTAGGCAGGTAGGAATATAATAATTTTCTTAGTCCTCAAAGG ATAGCTCAAGTTATAGGAGTTGGGGACATATGGGTTAGATAGGGGGTCCAGAAATTGATTTCTATTAAGTACACTTTATC TTTCCGATGTACCAAAAAAAAGACTTATTTTGTTAAGTTATACTCCCTCTGTTCCTTATCATAAGGTCATTTTTGAGTGT TTTTCTTGTTCCAAAATATAAGTCAATTTACAATATCAATGAAGCATTAATTATTTTTTTCCAAAACTATCATCATATTT AATATGAAAGAGACAATGAGATTTTGAAATAATAACTTGGAGAGAGAAATTTATACAGTAATAAATTAAATAAGGGTAAT CTAGGAAAGTGAATAAATTCTTTTACAAATTTATTGCTTGTAACTACTTTTCTTAATCTAAGAGAATTGGGTAAAATGAA CTTATAAATAGGAACGGAGGGTAAATAAGTATGTCTCTTTCAACAAATCATTCTTCATACACACTGCACATAAATTGAAC TTTAAACTAGATGCTTAAAAAGTCTAACTCTCAGGTGTCTTAAGTTTTTATTTTATTTTTGCAAGTTGATATTGTATTCT TCATTTTAAATTTACTTTTATAAAATCACTTCTCTTTAAAAAAAGATTGACAACATTTTTCATTTACATTCACTAATTAC ATTCTCTGTAGAACAAAAGAATATGCAGAGTCATTAAATTTTTGTGGGTCATAAAATGGCCAATAGAAGAATTTTTAGGT TCTATATGCGATGAGGAATCGTATATTGTGCAATGCAATGGGTAGGTTAATTCATCTCTCTTAGCTAGCTTCCTTTCTAC CCACAAGTTCGGTTGTCAATAATGAACATTAATGAAGTTACACATACTCCAACTACTACTAGTGCTATTATTTTCACCTT AGAACTCTATTTAGCATTAAATAACTTAGTAAAACAATGTCTCTGATTAACTTTCTTGTTAATTTACAGACACCATCACA ATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAGTATCTATACCTCGGAACTTACGGTAATTTCCATCAT CTAGTGCCACTAATAATTTGTCTGAATAATGTAATAATTACTACAAATATGAGTAATGATAGAAATGTTTTTTGTATGCT ACTATATGAATGTGAGATGTATCAAGTGAAAAAACTATTTTTGGTGTGAATTAGAGGATTGAATAAGTCTTGTTATTAAA TATTATAACAAATAGTTAAGATTGAAATACAAATCAGTGTGACATTTTTTTTTTCCAAAAGTGAATATGCCTCGATTGGT TTTCTTAGTTTTTGGTGGAGATGTGCGGTCTTGAATGAATCTTCCGACACAATAATATAGTGGTGACATGGTGAATAGGT ACTTAAAAAAATACCCTAACATACAAGTCAGTATGAGAGAATAAAAAAGAGCTCAAAAGTCATAGAAGAACAATAATAAT AAAAATGAGCATTGTACAATTATTGCAATTAAGCCTTTATGAAGCCTTATTGGATGAATTCCAAGATAATGGGTAACCTT TCAGTTATTTAGTAAATATGTCAGCTATGTTCCACTCGGTTGTCCGTTGAATGAGGTGTCGGTTGTCCGTTGAACGAGGT GATCATTTTTCCAGTCGTTTCGGTCAATCAACATGGTACTTTCTTAGTTATAAAACTATTGGAGAGTTAGGTTTTGGTTG TTCGGGATTGGTTAGCAAGTTGTTAGACCTTAGCAACTAATTGTGTAACTGTAACCTCTCAAACTAGCATGAATAATAAA ACAAGTGAGCTAGAGTCTAATCACTAATAACTTACAAATCAATTCGTAACAACTCAAACCTAACTCTCAAATTAAAACTT TTAAACTACTTAAGATATTATTGGGCTTTGTGACCATTTAAATCGGTCATAACACATTTCGATATGTTTTCTCAAACCTT TAGGAAATCCATTTGACCATGGCTTGAAGGCTCAATTCCAATTTCTAACTGAAAAATCGGATTTCATTTAATAAGGCCCC GCAGGTCAAATCTAGAGGACAATTAAAATTATGAAAAAATGCAATCAAAGTGTAGTTTGTTGGGATGTAGATCACCAAAC CTCAACTACTTATTATAGCTATTTAAATATGATCTCATTCTTTCATCGTCCTTTATTCTATATGGTATAAAAGGACAATT CGTTCCTAACCTAATTTTGCATGCAAATTAATTAAATATCTTTGCATTATTATTCTGGTGCAGCTACACAAGAAGAAGCA GCAACAGCATATGACATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCGTTATATCAA ATGGCTACATCCAAAGACTCAAGACCAAGACAACGACGAAATTGCTACCAAAAACCCTGAACCAAATGATATTCCTAACT CTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGGGCCAGACATCGGTGAAACCACAACATTAAGGCCTGCTAGTAAT AATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTTTGCAGTCAACAAAATTCAAAGAAATGCTAGAAAGGACTTCAGC TACCGATTATCCTCCACCACCTTCAAAGTCAAACCCTGCTTCTCGTACATTTCCTGATGATATTCAAACATTTTTTGAAT GTCATGATGATTCTGGAAGCACCTACATGGAGAGTGATGACATCATATTTGGTGAGTTGAGCTCAATTACTGCACCCATT TTTCATTATGAGCTCAATGCTTAGAACAAGGAGTTGTTCAAGCCAATTCATAGCTAAAATGTCCATTGATGCTTAAGAGA CTGGAAGATTCTTCAAACAGTGGCATTTCTTTTCTTTCTGTATAAACTTGAAGGGGGGAAAGGCTTGCAAATTGTTATTC TTTTGCTTTTTGGTTTATTCTTGTATTAATTTTTACAATTGAGATAAAACGAGATGATAAGGTGAGGGTGTGATTTCTAT AACTTAAATTAGTATGTCTATCCTCATCATGAAATACAAATTGTAGCTTTATTTTATTATTTGTTTTAAAGGTAGTATAG TTTTTTAGTCATTTACATGCTGTCTAATTATTTTTGGTTTATTCTTGTATTAATTTTTACATTTTAACTCTTAGCACCAT TCCACTCTCTTTTCTCTTCATCCTCTGATTCTCCTTCCTATTTTTTCATTGCTTC
CDS sequence (LotjaGi3g1v0002500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGTTTCTCTCGAGGAGTCTCCAAATA TAGAGGCGTGGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAGTATCTATACC TCGGAACTTACGCTACACAAGAAGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTT ACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACATCCAAAGACTCAAGACCAAGACAACGACGAAATTGCTACCAA AAACCCTGAACCAAATGATATTCCTAACTCTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGGGCCAGACATCGGTG AAACCACAACATTAAGGCCTGCTAGTAATAATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTTTGCAGTCAACAAAA TTCAAAGAAATGCTAGAAAGGACTTCAGCTACCGATTATCCTCCACCACCTTCAAAGTCAAACCCTGCTTCTCGTACATT TCCTGATGATATTCAAACATTTTTTGAATGTCATGATGATTCTGGAAGCACCTACATGGAGAGTGATGACATCATATTTG GTGAGTTGAGCTCAATTACTGCACCCATTTTTCATTATGAGCTCAATGCTTAG
Protein sequence (LotjaGi3g1v0002500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAV TNFDLSRYIKWLHPKTQDQDNDEIATKNPEPNDIPNSELELGLVSHQIGPDIGETTTLRPASNNGPRTSSALGLLLQSTK FKEMLERTSATDYPPPPSKSNPASRTFPDDIQTFFECHDDSGSTYMESDDIIFGELSSITAPIFHYELNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 229 | 229 | 4.3E-87 | – | |
PANTHER | 1 | 229 | 229 | 4.3E-87 | – | |
CDD | 25 | 86 | 62 | 6.57883E-26 | ||
Pfam | 25 | 76 | 52 | 6.0E-12 | ||
SUPERFAMILY | 25 | 86 | 62 | 4.77E-18 | ||
Gene3D | 25 | 86 | 62 | 1.4E-19 | ||
SMART | 26 | 90 | 65 | 1.2E-24 | ||
ProSiteProfiles | 26 | 84 | 59 | 18.334 | ||
MobiDBLite | 167 | 188 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0002500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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