Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0002500 |
| Transcript ID | LotjaGi3g1v0002500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ap2-like ethylene-responsive transcription factor; TAIR: AT1G16060.3 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|U5GNH0|U5GNH0_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:347473..351927) extracted from Lotus japonicus Gifu genome v1.2.
CGAACTGTATGCAATTGCTTAACAAGTGCAGTGGTCCTCTCTTCTCTTGTTATGACTCAGCATTAACATTCAATTCAATT CATGGCTAAGAAGAAAGGCCTCAAAAACACTAGTACTAGTAATGCTATTGCTACTGCTACTAACACCGCCACCACGACCA CCACCACGAAGATGAAGAAGCGTTCACGCAAAAGCACCCCAAGAGACACACCATCACAAAGAAGCTCTGTCTACCGTGGC GTTACAAGGTTAGCTTGATCCATTCAATTCAATATATGCTACCTTTTTTACCCATCTTAATTGTCTCTTAAATTTACCTC TATTTTCTGCTCCAATATCTTATATAATACTAACATTTTCAGAGATATATATATCGGTGACAAAATGTGTATATCTATGG TTTTACATATAGGCATAGATGGACAGGTCGATATGAGGCCCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCA AGAAAGGAAGACAAGGTTCTTAATTAATACTTAGATCTTAATCTTAATGGTAGTTCTTCTATAATTTCCAATTTCTTTCA TTTATTCGATTTTTCATTATTTTCATGCCTCACCGTGTTTTTTATGGCGATGGAAAACAATTGGCTGCAGTATATTTAGG TATGATTTTCATTGACAAATCTTCATCTTTTTTAGTTGTTCAATTCTCTAATTAATTTTAATAATGAATTAAATGTGGGT ACGTACAAATTAAACTTGGGTGGTTTTGTTAGGGGCATATGACGATGAAGATGCAGCAGCACGTGCCTATGACTTGGCAG CATTGAAGTATTGGGGCCAAGACACCATCCTCAATTTTCCAGTACTTCCTCTGATCCCTTCAATTCAATGCTGATTATTG ACCAAAAAAAAGTCCAATGCTGATTTCATGATAATTTCAAACAAACTTTAATCTGTTCTTTGTTGTTGATGATCGATCAT AGTTATCAAATTATCAAGATGAGCTTAAGGAGATGGAGAATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGGTCT TTGTTTAGTTATAAAATGTGTATTGTACATTTATTATGTAGGTTAAAGAGTCATTTTTTAATGTAGTACTTTTTAGCCAT TTCTCACAAACTTTCATCTTTAATTTACAGAAAAAGTAGCGGTTTCTCTCGAGGAGTCTCCAAATATAGAGGCGTGGCAA GGTACCACATTAATTTCTGTTTTAGCAAATTTTGGTTTCTAGGCAGGTAGGAATATAATAATTTTCTTAGTCCTCAAAGG ATAGCTCAAGTTATAGGAGTTGGGGACATATGGGTTAGATAGGGGGTCCAGAAATTGATTTCTATTAAGTACACTTTATC TTTCCGATGTACCAAAAAAAAGACTTATTTTGTTAAGTTATACTCCCTCTGTTCCTTATCATAAGGTCATTTTTGAGTGT TTTTCTTGTTCCAAAATATAAGTCAATTTACAATATCAATGAAGCATTAATTATTTTTTTCCAAAACTATCATCATATTT AATATGAAAGAGACAATGAGATTTTGAAATAATAACTTGGAGAGAGAAATTTATACAGTAATAAATTAAATAAGGGTAAT CTAGGAAAGTGAATAAATTCTTTTACAAATTTATTGCTTGTAACTACTTTTCTTAATCTAAGAGAATTGGGTAAAATGAA CTTATAAATAGGAACGGAGGGTAAATAAGTATGTCTCTTTCAACAAATCATTCTTCATACACACTGCACATAAATTGAAC TTTAAACTAGATGCTTAAAAAGTCTAACTCTCAGGTGTCTTAAGTTTTTATTTTATTTTTGCAAGTTGATATTGTATTCT TCATTTTAAATTTACTTTTATAAAATCACTTCTCTTTAAAAAAAGATTGACAACATTTTTCATTTACATTCACTAATTAC ATTCTCTGTAGAACAAAAGAATATGCAGAGTCATTAAATTTTTGTGGGTCATAAAATGGCCAATAGAAGAATTTTTAGGT TCTATATGCGATGAGGAATCGTATATTGTGCAATGCAATGGGTAGGTTAATTCATCTCTCTTAGCTAGCTTCCTTTCTAC CCACAAGTTCGGTTGTCAATAATGAACATTAATGAAGTTACACATACTCCAACTACTACTAGTGCTATTATTTTCACCTT AGAACTCTATTTAGCATTAAATAACTTAGTAAAACAATGTCTCTGATTAACTTTCTTGTTAATTTACAGACACCATCACA ATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAGTATCTATACCTCGGAACTTACGGTAATTTCCATCAT CTAGTGCCACTAATAATTTGTCTGAATAATGTAATAATTACTACAAATATGAGTAATGATAGAAATGTTTTTTGTATGCT ACTATATGAATGTGAGATGTATCAAGTGAAAAAACTATTTTTGGTGTGAATTAGAGGATTGAATAAGTCTTGTTATTAAA TATTATAACAAATAGTTAAGATTGAAATACAAATCAGTGTGACATTTTTTTTTTCCAAAAGTGAATATGCCTCGATTGGT TTTCTTAGTTTTTGGTGGAGATGTGCGGTCTTGAATGAATCTTCCGACACAATAATATAGTGGTGACATGGTGAATAGGT ACTTAAAAAAATACCCTAACATACAAGTCAGTATGAGAGAATAAAAAAGAGCTCAAAAGTCATAGAAGAACAATAATAAT AAAAATGAGCATTGTACAATTATTGCAATTAAGCCTTTATGAAGCCTTATTGGATGAATTCCAAGATAATGGGTAACCTT TCAGTTATTTAGTAAATATGTCAGCTATGTTCCACTCGGTTGTCCGTTGAATGAGGTGTCGGTTGTCCGTTGAACGAGGT GATCATTTTTCCAGTCGTTTCGGTCAATCAACATGGTACTTTCTTAGTTATAAAACTATTGGAGAGTTAGGTTTTGGTTG TTCGGGATTGGTTAGCAAGTTGTTAGACCTTAGCAACTAATTGTGTAACTGTAACCTCTCAAACTAGCATGAATAATAAA ACAAGTGAGCTAGAGTCTAATCACTAATAACTTACAAATCAATTCGTAACAACTCAAACCTAACTCTCAAATTAAAACTT TTAAACTACTTAAGATATTATTGGGCTTTGTGACCATTTAAATCGGTCATAACACATTTCGATATGTTTTCTCAAACCTT TAGGAAATCCATTTGACCATGGCTTGAAGGCTCAATTCCAATTTCTAACTGAAAAATCGGATTTCATTTAATAAGGCCCC GCAGGTCAAATCTAGAGGACAATTAAAATTATGAAAAAATGCAATCAAAGTGTAGTTTGTTGGGATGTAGATCACCAAAC CTCAACTACTTATTATAGCTATTTAAATATGATCTCATTCTTTCATCGTCCTTTATTCTATATGGTATAAAAGGACAATT CGTTCCTAACCTAATTTTGCATGCAAATTAATTAAATATCTTTGCATTATTATTCTGGTGCAGCTACACAAGAAGAAGCA GCAACAGCATATGACATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCGTTATATCAA ATGGCTACATCCAAAGACTCAAGACCAAGACAACGACGAAATTGCTACCAAAAACCCTGAACCAAATGATATTCCTAACT CTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGGGCCAGACATCGGTGAAACCACAACATTAAGGCCTGCTAGTAAT AATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTTTGCAGTCAACAAAATTCAAAGAAATGCTAGAAAGGACTTCAGC TACCGATTATCCTCCACCACCTTCAAAGTCAAACCCTGCTTCTCGTACATTTCCTGATGATATTCAAACATTTTTTGAAT GTCATGATGATTCTGGAAGCACCTACATGGAGAGTGATGACATCATATTTGGTGAGTTGAGCTCAATTACTGCACCCATT TTTCATTATGAGCTCAATGCTTAGAACAAGGAGTTGTTCAAGCCAATTCATAGCTAAAATGTCCATTGATGCTTAAGAGA CTGGAAGATTCTTCAAACAGTGGCATTTCTTTTCTTTCTGTATAAACTTGAAGGGGGGAAAGGCTTGCAAATTGTTATTC TTTTGCTTTTTGGTTTATTCTTGTATTAATTTTTACAATTGAGATAAAACGAGATGATAAGGTGAGGGTGTGATTTCTAT AACTTAAATTAGTATGTCTATCCTCATCATGAAATACAAATTGTAGCTTTATTTTATTATTTGTTTTAAAGGTAGTATAG TTTTTTAGTCATTTACATGCTGTCTAATTATTTTTGGTTTATTCTTGTATTAATTTTTACATTTTAACTCTTAGCACCAT TCCACTCTCTTTTCTCTTCATCCTCTGATTCTCCTTCCTATTTTTTCATTGCTTC
CDS sequence (LotjaGi3g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCACCGTGTTTTTTATGGCGATGGAAAACAATTGGCTGCAGTATATTTAGGGGCATATGACGATGAAGATGCAGC AGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGACACCATCCTCAATTTTCCATTATCAAATTATCAAG ATGAGCTTAAGGAGATGGAGAATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGTTTCTCTCGA GGAGTCTCCAAATATAGAGGCGTGGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAA CAAGTATCTATACCTCGGAACTTACGCTACACAAGAAGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTATCGTG GACTTAATGCAGTTACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACATCCAAAGACTCAAGACCAAGACAACGAC GAAATTGCTACCAAAAACCCTGAACCAAATGATATTCCTAACTCTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGG GCCAGACATCGGTGAAACCACAACATTAAGGCCTGCTAGTAATAATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTT TGCAGTCAACAAAATTCAAAGAAATGCTAGAAAGGACTTCAGCTACCGATTATCCTCCACCACCTTCAAAGTCAAACCCT GCTTCTCGTACATTTCCTGATGATATTCAAACATTTTTTGAATGTCATGATGATTCTGGAAGCACCTACATGGAGAGTGA TGACATCATATTTGGTGAGTTGAGCTCAATTACTGCACCCATTTTTCATTATGAGCTCAATGCTTAG
Protein sequence (LotjaGi3g1v0002500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPHRVFYGDGKQLAAVYLGAYDDEDAAARAYDLAALKYWGQDTILNFPLSNYQDELKEMENQSKEEYIGSLRRKSSGFSR GVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLHPKTQDQDND EIATKNPEPNDIPNSELELGLVSHQIGPDIGETTTLRPASNNGPRTSSALGLLLQSTKFKEMLERTSATDYPPPPSKSNP ASRTFPDDIQTFFECHDDSGSTYMESDDIIFGELSSITAPIFHYELNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 48 | 48 | 12.774 | ||
| SMART | 2 | 54 | 53 | 7.5E-5 | ||
| Gene3D | 6 | 50 | 45 | 3.4E-11 | ||
| PANTHER | 14 | 287 | 274 | 1.2E-119 | – | |
| PANTHER | 14 | 287 | 274 | 1.2E-119 | – | |
| SUPERFAMILY | 15 | 50 | 36 | 2.88E-9 | ||
| CDD | 83 | 144 | 62 | 2.56165E-25 | ||
| Pfam | 83 | 134 | 52 | 8.7E-12 | ||
| SUPERFAMILY | 83 | 144 | 62 | 7.19E-18 | ||
| Gene3D | 83 | 144 | 62 | 2.1E-19 | ||
| ProSiteProfiles | 84 | 142 | 59 | 18.334 | ||
| SMART | 84 | 148 | 65 | 1.2E-24 | ||
| MobiDBLite | 225 | 246 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0002500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…