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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0002500 |
| Transcript ID | LotjaGi3g1v0002500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ap2-like ethylene-responsive transcription factor; TAIR: AT1G16060.1 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|U5GNH0|U5GNH0_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:347584..351936) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACTCTCGAACTGTATGCAATTGCTTAACAAGTGCAGTGGTCCTCTCTTCTCTTGTTATGACTCAGCATTAACATTC AATTCAATTCATGGCTAAGAAGAAAGGCCTCAAAAACACTAGTACTAGTAATGCTATTGCTACTGCTACTAACACCGCCA CCACGACCACCACCACGAAGATGAAGAAGCGTTCACGCAAAAGCACCCCAAGAGACACACCATCACAAAGAAGCTCTGTC TACCGTGGCGTTACAAGGTTAGCTTGATCCATTCAATTCAATATATGCTACCTTTTTTACCCATCTTAATTGTCTCTTAA ATTTACCTCTATTTTCTGCTCCAATATCTTATATAATACTAACATTTTCAGAGATATATATATCGGTGACAAAATGTGTA TATCTATGGTTTTACATATAGGCATAGATGGACAGGTCGATATGAGGCCCATTTGTGGGATAAGAATTGCTGGAATGAAT CACAGAGCAAGAAAGGAAGACAAGGTTCTTAATTAATACTTAGATCTTAATCTTAATGGTAGTTCTTCTATAATTTCCAA TTTCTTTCATTTATTCGATTTTTCATTATTTTCATGCCTCACCGTGTTTTTTATGGCGATGGAAAACAATTGGCTGCAGT ATATTTAGGTATGATTTTCATTGACAAATCTTCATCTTTTTTAGTTGTTCAATTCTCTAATTAATTTTAATAATGAATTA AATGTGGGTACGTACAAATTAAACTTGGGTGGTTTTGTTAGGGGCATATGACGATGAAGATGCAGCAGCACGTGCCTATG ACTTGGCAGCATTGAAGTATTGGGGCCAAGACACCATCCTCAATTTTCCAGTACTTCCTCTGATCCCTTCAATTCAATGC TGATTATTGACCAAAAAAAAGTCCAATGCTGATTTCATGATAATTTCAAACAAACTTTAATCTGTTCTTTGTTGTTGATG ATCGATCATAGTTATCAAATTATCAAGATGAGCTTAAGGAGATGGAGAATCAATCAAAAGAAGAATATATTGGATCCTTA AGAAGGTCTTTGTTTAGTTATAAAATGTGTATTGTACATTTATTATGTAGGTTAAAGAGTCATTTTTTAATGTAGTACTT TTTAGCCATTTCTCACAAACTTTCATCTTTAATTTACAGAAAAAGTAGCGGTTTCTCTCGAGGAGTCTCCAAATATAGAG GCGTGGCAAGGTACCACATTAATTTCTGTTTTAGCAAATTTTGGTTTCTAGGCAGGTAGGAATATAATAATTTTCTTAGT CCTCAAAGGATAGCTCAAGTTATAGGAGTTGGGGACATATGGGTTAGATAGGGGGTCCAGAAATTGATTTCTATTAAGTA CACTTTATCTTTCCGATGTACCAAAAAAAAGACTTATTTTGTTAAGTTATACTCCCTCTGTTCCTTATCATAAGGTCATT TTTGAGTGTTTTTCTTGTTCCAAAATATAAGTCAATTTACAATATCAATGAAGCATTAATTATTTTTTTCCAAAACTATC ATCATATTTAATATGAAAGAGACAATGAGATTTTGAAATAATAACTTGGAGAGAGAAATTTATACAGTAATAAATTAAAT AAGGGTAATCTAGGAAAGTGAATAAATTCTTTTACAAATTTATTGCTTGTAACTACTTTTCTTAATCTAAGAGAATTGGG TAAAATGAACTTATAAATAGGAACGGAGGGTAAATAAGTATGTCTCTTTCAACAAATCATTCTTCATACACACTGCACAT AAATTGAACTTTAAACTAGATGCTTAAAAAGTCTAACTCTCAGGTGTCTTAAGTTTTTATTTTATTTTTGCAAGTTGATA TTGTATTCTTCATTTTAAATTTACTTTTATAAAATCACTTCTCTTTAAAAAAAGATTGACAACATTTTTCATTTACATTC ACTAATTACATTCTCTGTAGAACAAAAGAATATGCAGAGTCATTAAATTTTTGTGGGTCATAAAATGGCCAATAGAAGAA TTTTTAGGTTCTATATGCGATGAGGAATCGTATATTGTGCAATGCAATGGGTAGGTTAATTCATCTCTCTTAGCTAGCTT CCTTTCTACCCACAAGTTCGGTTGTCAATAATGAACATTAATGAAGTTACACATACTCCAACTACTACTAGTGCTATTAT TTTCACCTTAGAACTCTATTTAGCATTAAATAACTTAGTAAAACAATGTCTCTGATTAACTTTCTTGTTAATTTACAGAC ACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAGTATCTATACCTCGGAACTTACGGTAAT TTCCATCATCTAGTGCCACTAATAATTTGTCTGAATAATGTAATAATTACTACAAATATGAGTAATGATAGAAATGTTTT TTGTATGCTACTATATGAATGTGAGATGTATCAAGTGAAAAAACTATTTTTGGTGTGAATTAGAGGATTGAATAAGTCTT GTTATTAAATATTATAACAAATAGTTAAGATTGAAATACAAATCAGTGTGACATTTTTTTTTTCCAAAAGTGAATATGCC TCGATTGGTTTTCTTAGTTTTTGGTGGAGATGTGCGGTCTTGAATGAATCTTCCGACACAATAATATAGTGGTGACATGG TGAATAGGTACTTAAAAAAATACCCTAACATACAAGTCAGTATGAGAGAATAAAAAAGAGCTCAAAAGTCATAGAAGAAC AATAATAATAAAAATGAGCATTGTACAATTATTGCAATTAAGCCTTTATGAAGCCTTATTGGATGAATTCCAAGATAATG GGTAACCTTTCAGTTATTTAGTAAATATGTCAGCTATGTTCCACTCGGTTGTCCGTTGAATGAGGTGTCGGTTGTCCGTT GAACGAGGTGATCATTTTTCCAGTCGTTTCGGTCAATCAACATGGTACTTTCTTAGTTATAAAACTATTGGAGAGTTAGG TTTTGGTTGTTCGGGATTGGTTAGCAAGTTGTTAGACCTTAGCAACTAATTGTGTAACTGTAACCTCTCAAACTAGCATG AATAATAAAACAAGTGAGCTAGAGTCTAATCACTAATAACTTACAAATCAATTCGTAACAACTCAAACCTAACTCTCAAA TTAAAACTTTTAAACTACTTAAGATATTATTGGGCTTTGTGACCATTTAAATCGGTCATAACACATTTCGATATGTTTTC TCAAACCTTTAGGAAATCCATTTGACCATGGCTTGAAGGCTCAATTCCAATTTCTAACTGAAAAATCGGATTTCATTTAA TAAGGCCCCGCAGGTCAAATCTAGAGGACAATTAAAATTATGAAAAAATGCAATCAAAGTGTAGTTTGTTGGGATGTAGA TCACCAAACCTCAACTACTTATTATAGCTATTTAAATATGATCTCATTCTTTCATCGTCCTTTATTCTATATGGTATAAA AGGACAATTCGTTCCTAACCTAATTTTGCATGCAAATTAATTAAATATCTTTGCATTATTATTCTGGTGCAGCTACACAA GAAGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCG TTATATCAAATGGCTACATCCAAAGACTCAAGACCAAGACAACGACGAAATTGCTACCAAAAACCCTGAACCAAATGATA TTCCTAACTCTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGGGCCAGACATCGGTGAAACCACAACATTAAGGCCT GCTAGTAATAATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTTTGCAGTCAACAAAATTCAAAGAAATGCTAGAAAG GACTTCAGCTACCGATTATCCTCCACCACCTTCAAAGTCAAACCCTGCTTCTCGTACATTTCCTGATGATATTCAAACAT TTTTTGAATGTCATGATGATTCTGGAAGCACCTACATGGAGAGTGATGACATCATATTTGGTGAGTTGAGCTCAATTACT GCACCCATTTTTCATTATGAGCTCAATGCTTAGAACAAGGAGTTGTTCAAGCCAATTCATAGCTAAAATGTCCATTGATG CTTAAGAGACTGGAAGATTCTTCAAACAGTGGCATTTCTTTTCTTTCTGTATAAACTTGAAGGGGGGAAAGGCTTGCAAA TTGTTATTCTTTTGCTTTTTGGTTTATTCTTGTATTAATTTTTACAATTGAGATAAAACGAGATGATAAGGTGAGGGTGT GATTTCTATAACTTAAATTAGTATGTCTATCCTCATCATGAAATACAAATTGTAGCTTTATTTTATTATTTGTTTTAAAG GTAGTATAGTTTTTTAGTCATTTACATGCTGTC
CDS sequence (LotjaGi3g1v0002500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGTTTCTCTCGAGGAGTCTCCAAATA TAGAGGCGTGGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAGTATCTATACC TCGGAACTTACGCTACACAAGAAGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTT ACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACATCCAAAGACTCAAGACCAAGACAACGACGAAATTGCTACCAA AAACCCTGAACCAAATGATATTCCTAACTCTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGGGCCAGACATCGGTG AAACCACAACATTAAGGCCTGCTAGTAATAATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTTTGCAGTCAACAAAA TTCAAAGAAATGCTAGAAAGGACTTCAGCTACCGATTATCCTCCACCACCTTCAAAGTCAAACCCTGCTTCTCGTACATT TCCTGATGATATTCAAACATTTTTTGAATGTCATGATGATTCTGGAAGCACCTACATGGAGAGTGATGACATCATATTTG GTGAGTTGAGCTCAATTACTGCACCCATTTTTCATTATGAGCTCAATGCTTAG
Protein sequence (LotjaGi3g1v0002500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAV TNFDLSRYIKWLHPKTQDQDNDEIATKNPEPNDIPNSELELGLVSHQIGPDIGETTTLRPASNNGPRTSSALGLLLQSTK FKEMLERTSATDYPPPPSKSNPASRTFPDDIQTFFECHDDSGSTYMESDDIIFGELSSITAPIFHYELNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 229 | 229 | 4.3E-87 | – | |
| PANTHER | 1 | 229 | 229 | 4.3E-87 | – | |
| CDD | 25 | 86 | 62 | 6.57883E-26 | ||
| Pfam | 25 | 76 | 52 | 6.0E-12 | ||
| SUPERFAMILY | 25 | 86 | 62 | 4.77E-18 | ||
| Gene3D | 25 | 86 | 62 | 1.4E-19 | ||
| SMART | 26 | 90 | 65 | 1.2E-24 | ||
| ProSiteProfiles | 26 | 84 | 59 | 18.334 | ||
| MobiDBLite | 167 | 188 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0002500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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