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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0002500 |
| Transcript ID | LotjaGi3g1v0002500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ap2-like ethylene-responsive transcription factor; TAIR: AT1G16060.1 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|A0A1J7HQK8|A0A1J7HQK8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:347630..351893) extracted from Lotus japonicus Gifu genome v1.2.
TCCTCTCTTCTCTTGTTATGACTCAGCATTAACATTCAATTCAATTCATGGCTAAGAAGAAAGGCCTCAAAAACACTAGT ACTAGTAATGCTATTGCTACTGCTACTAACACCGCCACCACGACCACCACCACGAAGATGAAGAAGCGTTCACGCAAAAG CACCCCAAGAGACACACCATCACAAAGAAGCTCTGTCTACCGTGGCGTTACAAGGTTAGCTTGATCCATTCAATTCAATA TATGCTACCTTTTTTACCCATCTTAATTGTCTCTTAAATTTACCTCTATTTTCTGCTCCAATATCTTATATAATACTAAC ATTTTCAGAGATATATATATCGGTGACAAAATGTGTATATCTATGGTTTTACATATAGGCATAGATGGACAGGTCGATAT GAGGCCCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGGTTCTTAATTAATACTTAG ATCTTAATCTTAATGGTAGTTCTTCTATAATTTCCAATTTCTTTCATTTATTCGATTTTTCATTATTTTCATGCCTCACC GTGTTTTTTATGGCGATGGAAAACAATTGGCTGCAGTATATTTAGGTATGATTTTCATTGACAAATCTTCATCTTTTTTA GTTGTTCAATTCTCTAATTAATTTTAATAATGAATTAAATGTGGGTACGTACAAATTAAACTTGGGTGGTTTTGTTAGGG GCATATGACGATGAAGATGCAGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGACACCATCCTCAA TTTTCCAGTACTTCCTCTGATCCCTTCAATTCAATGCTGATTATTGACCAAAAAAAAGTCCAATGCTGATTTCATGATAA TTTCAAACAAACTTTAATCTGTTCTTTGTTGTTGATGATCGATCATAGTTATCAAATTATCAAGATGAGCTTAAGGAGAT GGAGAATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGGTCTTTGTTTAGTTATAAAATGTGTATTGTACATTTAT TATGTAGGTTAAAGAGTCATTTTTTAATGTAGTACTTTTTAGCCATTTCTCACAAACTTTCATCTTTAATTTACAGAAAA AGTAGCGGTTTCTCTCGAGGAGTCTCCAAATATAGAGGCGTGGCAAGGTACCACATTAATTTCTGTTTTAGCAAATTTTG GTTTCTAGGCAGGTAGGAATATAATAATTTTCTTAGTCCTCAAAGGATAGCTCAAGTTATAGGAGTTGGGGACATATGGG TTAGATAGGGGGTCCAGAAATTGATTTCTATTAAGTACACTTTATCTTTCCGATGTACCAAAAAAAAGACTTATTTTGTT AAGTTATACTCCCTCTGTTCCTTATCATAAGGTCATTTTTGAGTGTTTTTCTTGTTCCAAAATATAAGTCAATTTACAAT ATCAATGAAGCATTAATTATTTTTTTCCAAAACTATCATCATATTTAATATGAAAGAGACAATGAGATTTTGAAATAATA ACTTGGAGAGAGAAATTTATACAGTAATAAATTAAATAAGGGTAATCTAGGAAAGTGAATAAATTCTTTTACAAATTTAT TGCTTGTAACTACTTTTCTTAATCTAAGAGAATTGGGTAAAATGAACTTATAAATAGGAACGGAGGGTAAATAAGTATGT CTCTTTCAACAAATCATTCTTCATACACACTGCACATAAATTGAACTTTAAACTAGATGCTTAAAAAGTCTAACTCTCAG GTGTCTTAAGTTTTTATTTTATTTTTGCAAGTTGATATTGTATTCTTCATTTTAAATTTACTTTTATAAAATCACTTCTC TTTAAAAAAAGATTGACAACATTTTTCATTTACATTCACTAATTACATTCTCTGTAGAACAAAAGAATATGCAGAGTCAT TAAATTTTTGTGGGTCATAAAATGGCCAATAGAAGAATTTTTAGGTTCTATATGCGATGAGGAATCGTATATTGTGCAAT GCAATGGGTAGGTTAATTCATCTCTCTTAGCTAGCTTCCTTTCTACCCACAAGTTCGGTTGTCAATAATGAACATTAATG AAGTTACACATACTCCAACTACTACTAGTGCTATTATTTTCACCTTAGAACTCTATTTAGCATTAAATAACTTAGTAAAA CAATGTCTCTGATTAACTTTCTTGTTAATTTACAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATT CGGCAACAAGTATCTATACCTCGGAACTTACGGTAATTTCCATCATCTAGTGCCACTAATAATTTGTCTGAATAATGTAA TAATTACTACAAATATGAGTAATGATAGAAATGTTTTTTGTATGCTACTATATGAATGTGAGATGTATCAAGTGAAAAAA CTATTTTTGGTGTGAATTAGAGGATTGAATAAGTCTTGTTATTAAATATTATAACAAATAGTTAAGATTGAAATACAAAT CAGTGTGACATTTTTTTTTTCCAAAAGTGAATATGCCTCGATTGGTTTTCTTAGTTTTTGGTGGAGATGTGCGGTCTTGA ATGAATCTTCCGACACAATAATATAGTGGTGACATGGTGAATAGGTACTTAAAAAAATACCCTAACATACAAGTCAGTAT GAGAGAATAAAAAAGAGCTCAAAAGTCATAGAAGAACAATAATAATAAAAATGAGCATTGTACAATTATTGCAATTAAGC CTTTATGAAGCCTTATTGGATGAATTCCAAGATAATGGGTAACCTTTCAGTTATTTAGTAAATATGTCAGCTATGTTCCA CTCGGTTGTCCGTTGAATGAGGTGTCGGTTGTCCGTTGAACGAGGTGATCATTTTTCCAGTCGTTTCGGTCAATCAACAT GGTACTTTCTTAGTTATAAAACTATTGGAGAGTTAGGTTTTGGTTGTTCGGGATTGGTTAGCAAGTTGTTAGACCTTAGC AACTAATTGTGTAACTGTAACCTCTCAAACTAGCATGAATAATAAAACAAGTGAGCTAGAGTCTAATCACTAATAACTTA CAAATCAATTCGTAACAACTCAAACCTAACTCTCAAATTAAAACTTTTAAACTACTTAAGATATTATTGGGCTTTGTGAC CATTTAAATCGGTCATAACACATTTCGATATGTTTTCTCAAACCTTTAGGAAATCCATTTGACCATGGCTTGAAGGCTCA ATTCCAATTTCTAACTGAAAAATCGGATTTCATTTAATAAGGCCCCGCAGGTCAAATCTAGAGGACAATTAAAATTATGA AAAAATGCAATCAAAGTGTAGTTTGTTGGGATGTAGATCACCAAACCTCAACTACTTATTATAGCTATTTAAATATGATC TCATTCTTTCATCGTCCTTTATTCTATATGGTATAAAAGGACAATTCGTTCCTAACCTAATTTTGCATGCAAATTAATTA AATATCTTTGCATTATTATTCTGGTGCAGCTACACAAGAAGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTATC GTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACATCCAAAGACTCAAGACCAAGACAAC GACGAAATTGCTACCAAAAACCCTGAACCAAATGATATTCCTAACTCTGAACTTGAACTTGGGCTCGTCTCACATCAAAT TGGGCCAGACATCGGTGAAACCACAACATTAAGGCCTGCTAGTAATAATGGGCCGCGAACATCTTCTGCATTGGGCCTTC TTTTGCAGTCAACAAAATTCAAAGAAATGCTAGAAAGGACTTCAGCTACCGATTATCCTCCACCACCTTCAAAGTCAAAC CCTGCTTCTCGTACATTTCCTGATGATATTCAAACATTTTTTGAATGTCATGATGATTCTGGAAGCACCTACATGGAGAG TGATGACATCATATTTGGTGAGTTGAGCTCAATTACTGCACCCATTTTTCATTATGAGCTCAATGCTTAGAACAAGGAGT TGTTCAAGCCAATTCATAGCTAAAATGTCCATTGATGCTTAAGAGACTGGAAGATTCTTCAAACAGTGGCATTTCTTTTC TTTCTGTATAAACTTGAAGGGGGGAAAGGCTTGCAAATTGTTATTCTTTTGCTTTTTGGTTTATTCTTGTATTAATTTTT ACAATTGAGATAAAACGAGATGATAAGGTGAGGGTGTGATTTCTATAACTTAAATTAGTATGTCTATCCTCATCATGAAA TACAAATTGTAGCTTTATTTTATT
CDS sequence (LotjaGi3g1v0002500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAGAAGAAAGGCCTCAAAAACACTAGTACTAGTAATGCTATTGCTACTGCTACTAACACCGCCACCACGACCAC CACCACGAAGATGAAGAAGCGTTCACGCAAAAGCACCCCAAGAGACACACCATCACAAAGAAGCTCTGTCTACCGTGGCG TTACAAGGCATAGATGGACAGGTCGATATGAGGCCCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAA GGAAGACAAGTATATTTAGGGGCATATGACGATGAAGATGCAGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTG GGGCCAAGACACCATCCTCAATTTTCCATTATCAAATTATCAAGATGAGCTTAAGGAGATGGAGAATCAATCAAAAGAAG AATATATTGGATCCTTAAGAAGAAAAAGTAGCGGTTTCTCTCGAGGAGTCTCCAAATATAGAGGCGTGGCAAGACACCAT CACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTATTCGGCAACAAGTATCTATACCTCGGAACTTACGCTACACAAGA AGAAGCAGCAACAGCATATGACATGGCAGCCATAGAGTATCGTGGACTTAATGCAGTTACAAACTTTGACCTTAGTCGTT ATATCAAATGGCTACATCCAAAGACTCAAGACCAAGACAACGACGAAATTGCTACCAAAAACCCTGAACCAAATGATATT CCTAACTCTGAACTTGAACTTGGGCTCGTCTCACATCAAATTGGGCCAGACATCGGTGAAACCACAACATTAAGGCCTGC TAGTAATAATGGGCCGCGAACATCTTCTGCATTGGGCCTTCTTTTGCAGTCAACAAAATTCAAAGAAATGCTAGAAAGGA CTTCAGCTACCGATTATCCTCCACCACCTTCAAAGTCAAACCCTGCTTCTCGTACATTTCCTGATGATATTCAAACATTT TTTGAATGTCATGATGATTCTGGAAGCACCTACATGGAGAGTGATGACATCATATTTGGTGAGTTGAGCTCAATTACTGC ACCCATTTTTCATTATGAGCTCAATGCTTAG
Protein sequence (LotjaGi3g1v0002500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKKGLKNTSTSNAIATATNTATTTTTTKMKKRSRKSTPRDTPSQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQSKK GRQVYLGAYDDEDAAARAYDLAALKYWGQDTILNFPLSNYQDELKEMENQSKEEYIGSLRRKSSGFSRGVSKYRGVARHH HNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLHPKTQDQDNDEIATKNPEPNDI PNSELELGLVSHQIGPDIGETTTLRPASNNGPRTSSALGLLLQSTKFKEMLERTSATDYPPPPSKSNPASRTFPDDIQTF FECHDDSGSTYMESDDIIFGELSSITAPIFHYELNA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 7 | 355 | 349 | 8.5E-163 | – | |
| PANTHER | 7 | 355 | 349 | 8.5E-163 | – | |
| SUPERFAMILY | 49 | 118 | 70 | 5.43E-17 | ||
| Pfam | 49 | 108 | 60 | 2.5E-11 | ||
| SMART | 50 | 122 | 73 | 5.1E-26 | ||
| Gene3D | 50 | 118 | 69 | 6.0E-21 | ||
| ProSiteProfiles | 50 | 116 | 67 | 20.31 | ||
| PRINTS | 51 | 62 | 12 | 4.0E-6 | ||
| Gene3D | 151 | 212 | 62 | 3.0E-19 | ||
| SUPERFAMILY | 151 | 212 | 62 | 1.05E-17 | ||
| Pfam | 151 | 202 | 52 | 1.2E-11 | ||
| CDD | 151 | 212 | 62 | 4.78661E-24 | ||
| SMART | 152 | 216 | 65 | 1.2E-24 | ||
| ProSiteProfiles | 152 | 210 | 59 | 18.334 | ||
| PRINTS | 192 | 212 | 21 | 4.0E-6 | ||
| MobiDBLite | 293 | 314 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0002500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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