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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0003300 |
| Transcript ID | LotjaGi3g1v0003300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ; TAIR: AT1G80920.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q9SAG8|DNAJ8_ARATH Chaperone protein dnaJ 8, chloroplastic; TrEMBL-Plants: tr|I3T8G8|I3T8G8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0003300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:431453..434527) extracted from Lotus japonicus Gifu genome v1.2.
ACTGACTCTGTCTCTGTCTCTCTCTCAAAATAGAGCGTGTGCCGTGTCACGCCACGCTGCTACACAATGGATAAGATGAA GATGAAGATCAAGATGCCCCTTATTCACCGTTCTATTCCTATATATACCTTCTCCCTTCTCCATTCTAATCATTCAATTC TATTTCTATTTCATTCCCACTAATTTGATGTATTTTTTTTTTTTTGCAATTACTGAGTTTCCAAAGAATCAATCTCATTA ATTTAGTCTTGCCCAGTTGAAAAGATCAAACTTTGATAGTTTGATTATTAACAACCTTTAAAAGGGTAGATTTTGCAATG GCTGCTGCTGCTGCTGGGGTTATTGGTGGTTATTCATTGTCATGGATGCAATTCAAAGGCAGAGAAAGGAATCACAACAG GGTTATGATTTGTTGCTCTTCTTCTTTGATGGATTCTTATAAGACCTTAAGAGTCCAACCAGGTGCCTCCCAAACTGAGG TTAAGAAAGCTTTCCGGCACCTTGCTCTGCAGGTTGGTTTTATTTTCAATGAGGCTTCTTTCTACCCTTCTTTTCATTTT GCATTGGATTTCCGTTGAACTCAATGATGCTGATGCACATTTAACTCGAAAACAAAGGGGGCATTTAGATTTTTGGACTG GGCGAGCCCCTAGAGGGGCAACGCCCAGCATATAGCCCGCCCCGTGGCGGGGCCCTGGCCTTAAATTGGGCCTTCATCTC GGAGGCCCAATTGGCCCAATAGGTAGTACCCGAGCTCTATAAATTGGAGGTAGTTATCAGTTGTAAGAGACTTTTGCTCA TTTGATGAAATCATACATGAAATTCAGCATTCTCTCTCTAGCGCAATTCTCCATTCTCTAGGTACTATACCTTTTATCAA TGTTCATTGCAAGAACAATTTTGTTCTATGAATATGATTTTATGAAATTATCTTATTCTTTTTTCCCTAATGCAGCTGCT AATTTGTCTCTTTGAAATCTGGATGTTTGACATTATTTGGTCTTCGGATTCATGTGTGTCTGAGACTCTTTCTGAGAACA AAAAAACTCAATTTATTTTATAATTTTTATTGTGTTTCAGTACCATCCAGACGTGTGCCAAGGCAGCAAATGTGGGGTGC AGTTTCACCACATCAACGAGGCTTATGATGTGAGTTATCCTGCTTAGTATTCTCTGAATTTCAGTTGCATTATGAGCATT TATGTAGGTTGGGCTGGTTATTAGGAAAGTTATACTGAGCTGAATCATATCCTTTTTAATTGGAATAATAATGCTGAACT TACAAATTGGATTACGAAGTTGTATGATTTGATAAGTGCCTAGATTTGCATTGTTCTAAGGCAACAAAAGCAATAGCCTA CCATCTTTGTTGGCCTGCAGGTTCTAGCAGAATTTAGACTCGGACAACAGTAAACAATTGTCTAATTGGGATTTTGGTGT TGCATATGTGGAAAAACAGGTTGTGATGGCCAATTTGAGAGGTGAATCCAACACATCACTAATGTATGAGGCAGGCATTG ATGAGGCAATTAAGGGAGTGAATGATCAAGATTTGGAGGACTTGTGGGAAGAGTGGATGGGGTGGGAAGGAGCAGGAATT CGTGATTACTCTTCTCATATTAATCCTTACATTTGAAAATCTCATGCAATCTTATTATCAATGCTTAAGTTAGACCCACT TGTCCACACCAAAATTGTCGTTGGTGTTCCTTGTACATAGTCCAAGTGTCAAAAGTCATTGTCCTCAGTGTGATTGAAGT TGAGGGAGTGACTTTGTGTCAATAATACAAATCAAACATTTTTTTTTGAAAGGATAATACAAATTAAAGTTCAAAAGAGG AGAAAGCTCATTGCATGAACGATACATTATATACTAAACTTGGCCTTTTAACAAATGTCTCATTGATAAAACTTTAGTTC CTCATTATGAACCTATCTTCCAGACAATATTTTTTCCTCTTTTGCAGAATTGTTTAATACCTGGTTATTATAGAATCTTT CAAAGTTGGTTCAAAGAAGTTTTAAGTCCAAAGTTTGCATTTTCAAATTCTTCACCATTTTATAACACTTCATAAATTAA GAGATCAAGCTCTAATAACAACGTTTAAACTTCTCTAAATAGAGAGATCAAGCTCTAATAACAACTTTAAAACCATAGGA AACACAAACAAACAGCAACAGGGGGTTGAGTTGCGTTACAAAATCTTTTGTTCAAAGATGAAGATTTTTAATAGACACTA TAAATTTATATATCGGTAAAGAGTGTTGGATTTTGGGCTCCTTTTTTATGTGGAGAAAGACTCAAATATGTCAACCTTAT ATGTCTCACATACTTTGGTGGATATGGGTCAGATTAGTGGAGAGAGTTCACTTTAACAAGAGAGGCAAAAGAAAAGTGAG AGAAGAAGAAAAAAGAGATTTTCGCTAGAACTTAAAGAAGTTGAACGAGATTTACGGTTGTGCCTTGTTCAATATTAGAT CAGGCTGAAATTTGGACAGAAGGTTCATGACTTCTGGTACTTCAACCTGGACACTTGCATCAGTGAGATGTTGTCTAAGG TGGGAGAAATCAGACTCGAACAATAGCAGTGAAATCTGGTTTTCTAGTTTTCCTTTGTTCTCTATTTTTCTTGGTTTTCT GGTGTATACATAGGAAGTTTTTGACTTAACAATCCAAACTTGTACTCTTATTTTTACAAGAATTTAATTTTTTTACCACT AAACTAACGTCATTGTATTTTTTGAACTTACATAAGAATATTTTGTTATTATGATGCTTTACTTAAAAAATAAAACTAGT GGCAGGATCAGGGATATATTATCTTTTTGATTTTTTTAATTTTGAAATGTAAATTACAGTAATATCAAAAATTGTATTGT TTTTAAAACAGAATCAACATGAGAAAAAGGTGTAATTTGTTAATATAGTCATTTGAAAATCTTAATGGGAGCATAAGTTA ACTCCTTATGTGAATTTTGACTACATTAACAATCACATGAGAATTCAAATTCATCAAATGATAACCCGATGCATTAATGT AAAAATAAAACGTTATGCATTTTTTTTGAACTAAC
CDS sequence (LotjaGi3g1v0003300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCTGCTGCTGCTGGGGTTATTGGTGGTTATTCATTGTCATGGATGCAATTCAAAGGCAGAGAAAGGAATCACAA CAGGGTTATGATTTGTTGCTCTTCTTCTTTGATGGATTCTTATAAGACCTTAAGAGTCCAACCAGGTGCCTCCCAAACTG AGGTTAAGAAAGCTTTCCGGCACCTTGCTCTGCAGTACCATCCAGACGTGTGCCAAGGCAGCAAATGTGGGGTGCAGTTT CACCACATCAACGAGGCTTATGATGTTGTGATGGCCAATTTGAGAGGTGAATCCAACACATCACTAATGTATGAGGCAGG CATTGATGAGGCAATTAAGGGAGTGAATGATCAAGATTTGGAGGACTTGTGGGAAGAGTGGATGGGGTGGGAAGGAGCAG GAATTCGTGATTACTCTTCTCATATTAATCCTTACATTTGA
Protein sequence (LotjaGi3g1v0003300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAAAAGVIGGYSLSWMQFKGRERNHNRVMICCSSSLMDSYKTLRVQPGASQTEVKKAFRHLALQYHPDVCQGSKCGVQF HHINEAYDVVMANLRGESNTSLMYEAGIDEAIKGVNDQDLEDLWEEWMGWEGAGIRDYSSHINPYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 18 | 98 | 81 | 4.9E-17 | ||
| PANTHER | 23 | 146 | 124 | 1.5E-55 | – | |
| PANTHER | 23 | 146 | 124 | 1.5E-55 | – | |
| SUPERFAMILY | 35 | 135 | 101 | 1.83E-18 | ||
| SMART | 38 | 95 | 58 | 1.5E-13 | ||
| ProSiteProfiles | 39 | 95 | 57 | 12.446 | ||
| Pfam | 39 | 91 | 53 | 1.7E-14 | ||
| CDD | 39 | 89 | 51 | 9.60909E-15 | ||
| PRINTS | 41 | 59 | 19 | 1.2E-9 | ||
| PRINTS | 59 | 74 | 16 | 1.2E-9 | ||
| PRINTS | 75 | 95 | 21 | 1.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0003300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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