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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0004200 |
| Transcript ID | LotjaGi3g1v0004200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT1G80840.1 WRKY DNA-binding protein 40; Swiss-Prot: sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40; TrEMBL-Plants: tr|I3SYD9|I3SYD9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0004200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:536510..539025) extracted from Lotus japonicus Gifu genome v1.2.
CCCAGTTTCCTTCTTCAACTTGTTCTCCTCATCCACTTTCTGCCTCTATATATGATTTCTCCAACTGGCTTCACTTTGAA CTTCACAACGTTTGAGTCTTTCAACTTCCTCAAAAGTTTCTTCATCTGGGTTTTGCTTAGATCATACAAGTCTAGAAACT GTGTTTAGAGCTACTTGTTTGAGTATATATATAGATATATTTGGTATGGATTGTTCATCATGGATTAACACCTCATTGGA TCTCAACATTAATTCCCACAGGGTTTATGAAGATGTTCTTCAAGTAAGTATTAAAGCATCGAATATCAAGATCTTGTATG AACTATGAAGTATTGCATGCTTTTGCATCAGAATAATGTATAATTTGATACGGGGACTAATTCTTTCTTGTGTGCTCATT TCAGAAAAAGGAGGTGGAAAACAACTTTTTCTCACTAGGATTAAGGAAGTCTTCGGTGAAAGAAGAGGTTAGTCTAGCTT TGATTTTACTGCCTGTGCCACCGTTTGATTGAATGATTTTGTTATTATAGCATGTTTGGTTCCACGGTGGATTGCTCTAG AATCGCTTATGGTCAGAAGCAACTAATCTTAGCTTCTGAGTAAACATATGTCGATTCTGTGTAAATCGTGAAACGAGACC TAGCTACACTTAATTAATCTGTCCATTATGAATAATAGATAGGACCCCTTTTTCTTTTTTCTTCTTTTAGTGAAGCTTCA TGATTGATAATTTATGTGCTGCCATTTCAGTCCAATGGTGCCTTGGTGGAGGAGCTGAAGAGGGTGAGTGCAGAAAACAA GAAGTTAACTGAAATGCTCACAGAGATGTGTGAGAACTACAACACTTTGCGAAGTAACTTGACGGAATATATGAGGAATA ATCCTGACAACAAGGAAGTGATCAGCACATCAAAGAAAAGGAAGTCTGAAAGCAGTAACAACAACAGCAATCCATTGGGA GTAAATGGGAACTCTGAGAGCAGCTCAACTGATGAAGAAACATGCAAGAAACCAAGGGAAGAGACCATCAAGGCAAAAGT TTCCAAGGTTTATCACAGGACCGAACCATCAGACATAAGCCTTGTAAGTTCTTTACAGCAACATAACAAAGATACCCGTT TGGATATATACTGAATAAGTCATACATAATCTTTTAGGAGTAATTGTTTGACATGATTTTCATTCAATCTTTGTGTTTCC AGATTGTGAAAGATGGATATCAGTGGAGAAAATATGGACAAAAAGTGACCAGGGATAACCCTTCACCAAGAGCATACTTC AAATGCTCTTTTGCTCCTACCTGTCCAGTCAAAAAGAAGGTAATTCTAATTTCTAAGATCTCATTTCTATATGATATGAT AAGGGTCATGATTCTCTTAGGTGGAAACTTCACATGATACTGTCAGTCTGTCATGTTAAGTTTTTGTGTCTATCTTTCTC TAAATATCTAAGAAGAGATAGATAGATATAAAATTTCATGTGTCATGAGGATCCTCATCTGATAAGATAATTCAAACACA AACTCAGCTAAGGAACTGGATCACAAACTAAGTTGTTTTTGCTATTGTGTTTGGTTGTTCTACATTCAGGTACAAAGAAG TGTAGATGATCCATCCATTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCAATCTCTTCACAGATGGAGGCAACAT CAGGCTCAAATCGTTGTATGACCACAGTTTCAGTACCCTGTTCAGCACCAACAGTTACCCTTGACTGGACAAAATCTAAG TCCAGCTGCAAAGAGTCCAAGAATATGAATCCCAAAATCCATTCACCCGAAGTCCCTCAGATTTTGGTAGAACATATGGC TTCTTCCTTGACCAATGATCCTAATTTCAGAGCAGCACTTGTTGCTGCTATCTCAGGACAAATGCTGCCAAAAAACTAAG CAGAAATTGAATGAACTGTATTTAACACAATTGTCAAGTATTCTATAATTGGACCATTTCTAGAGCATAGGATCTTAATG TAAATACAACATAGAAAAATGGGACATGTTCCTCAGTTTGATCTTTGAAGTGGAAATTGAGTTGCACACTTGCACTCCTT CTGATGATGCACTTGCTTGTCAACTATCAAGCTCAGCGCAGTCTTCTCTCTATTTTTTGTATCTAGGTAAAGAGATATAC TCAAGTGAAATTTCGAATAAAAGTTAATTTGAAAGTTCATTAAATTGCAGTTTTATAAACCTTACCAATTCATCCTAGCT AATTCATGGCATATACATAACTTTTAATAAAACAAGTTGAGAAAGTATTTTAACCAATTTGAAACCATTTCAGTTTCAGA ATATATACATGTCAGGAGTTTAAGAAGGCGGTTTGGTTTATTGATAACCACTAACCAGATTAATCTTCTGGGGTAACAAA ATTTAAGAGTTTCCTATTTCCTTACCTGTGGTGTGCTGAGAAAAGTAAAACAAACCCCTAGTAAAAAACTTGGAAGCACA CTTGAATTTCTCAACTAGTGAAATGTGCTTTTGAAT
CDS sequence (LotjaGi3g1v0004200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGTTCATCATGGATTAACACCTCATTGGATCTCAACATTAATTCCCACAGGGTTTATGAAGATGTTCTTCAAAA AAAGGAGGTGGAAAACAACTTTTTCTCACTAGGATTAAGGAAGTCTTCGGTGAAAGAAGAGTCCAATGGTGCCTTGGTGG AGGAGCTGAAGAGGGTGAGTGCAGAAAACAAGAAGTTAACTGAAATGCTCACAGAGATGTGTGAGAACTACAACACTTTG CGAAGTAACTTGACGGAATATATGAGGAATAATCCTGACAACAAGGAAGTGATCAGCACATCAAAGAAAAGGAAGTCTGA AAGCAGTAACAACAACAGCAATCCATTGGGAGTAAATGGGAACTCTGAGAGCAGCTCAACTGATGAAGAAACATGCAAGA AACCAAGGGAAGAGACCATCAAGGCAAAAGTTTCCAAGGTTTATCACAGGACCGAACCATCAGACATAAGCCTTATTGTG AAAGATGGATATCAGTGGAGAAAATATGGACAAAAAGTGACCAGGGATAACCCTTCACCAAGAGCATACTTCAAATGCTC TTTTGCTCCTACCTGTCCAGTCAAAAAGAAGGTACAAAGAAGTGTAGATGATCCATCCATTCTGGTTGCAACTTATGAAG GAGAGCACAATCATCCAATCTCTTCACAGATGGAGGCAACATCAGGCTCAAATCGTTGTATGACCACAGTTTCAGTACCC TGTTCAGCACCAACAGTTACCCTTGACTGGACAAAATCTAAGTCCAGCTGCAAAGAGTCCAAGAATATGAATCCCAAAAT CCATTCACCCGAAGTCCCTCAGATTTTGGTAGAACATATGGCTTCTTCCTTGACCAATGATCCTAATTTCAGAGCAGCAC TTGTTGCTGCTATCTCAGGACAAATGCTGCCAAAAAACTAA
Protein sequence (LotjaGi3g1v0004200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCSSWINTSLDLNINSHRVYEDVLQKKEVENNFFSLGLRKSSVKEESNGALVEELKRVSAENKKLTEMLTEMCENYNTL RSNLTEYMRNNPDNKEVISTSKKRKSESSNNNSNPLGVNGNSESSSTDEETCKKPREETIKAKVSKVYHRTEPSDISLIV KDGYQWRKYGQKVTRDNPSPRAYFKCSFAPTCPVKKKVQRSVDDPSILVATYEGEHNHPISSQMEATSGSNRCMTTVSVP CSAPTVTLDWTKSKSSCKESKNMNPKIHSPEVPQILVEHMASSLTNDPNFRAALVAAISGQMLPKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 303 | 297 | 2.2E-134 | – | |
| PANTHER | 7 | 303 | 297 | 2.2E-134 | – | |
| Coils | 49 | 76 | 28 | - | – | |
| MobiDBLite | 85 | 137 | 53 | - | – | |
| MobiDBLite | 104 | 126 | 23 | - | – | |
| Gene3D | 144 | 222 | 79 | 1.2E-28 | ||
| ProSiteProfiles | 159 | 221 | 63 | 26.142 | ||
| SUPERFAMILY | 159 | 220 | 62 | 2.75E-25 | ||
| SMART | 160 | 220 | 61 | 4.6E-35 | ||
| Pfam | 161 | 219 | 59 | 3.3E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0004200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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