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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0005700 |
| Transcript ID | LotjaGi3g1v0005700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G22760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q1PF16|BH019_ARATH Transcription factor bHLH19; TrEMBL-Plants: tr|A0A1J7HNA2|A0A1J7HNA2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0005700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:731543..735976) extracted from Lotus japonicus Gifu genome v1.2.
GTTGGCTTCCGTGGGTCAGTGGAAAACTGATCCACGGTGATACATTTTATCCTCCACCGTTGGATTTATTGGTTAAATAT TAGGTGATTCAAATTGAAGGTCCCAAATAATCACAATAACAAAAAAACCCCTGATCCACTTCCTCACTGGTACAATTAAT CTCTTCCGTTCTCACTCCATCTCTGCCACCAAGCTCTGGCATACCACTGTGCTTCTCACCTAAGCCACCACTCCATCTCT TCCAGTTCTGAGTTTCAATCCATGAATTTATCTCTTCTTTTACCCCCCAAATGTTTTTATACGGAAATTAATCAAAATCC TAACTCTAATTCCAAATTGGTACCGAATAATTGAAGCCTTTTTCTTCAATCTAATAACATCGAGACAAGCACTTCAAAAT GAAATCTTCATTGTTCATTAGACACAAGAAGATCAGATGGCATTATTGTTTTATCCCTTTTCTTCAATCTAATAGCATCA GACCCACACCTCATTTACCCTTTTCTTTAATCAACATTGTTTTATCCTCTTCAATTCAATAGCATCACACACAAGAGAAG AAAGTCCAGAAATAAAATAAAAAAATCAGTCACAAAACCCCAACTTGCAATCCCACAGCAAATCCATTATTCTCCTTCCA CTTCCGCACAACACAAGCAGCATGGATATCATCGACATAAGACGAAAACCCCAACTTGCAATGCCTTTTTCTTCATCTGC CACAAAACCTTGCAAAATTCAGATCCAGCAAAAGGATAAGGAAAGAAACGTTTTTCTTCCAGATCCAGCAAGGGTGAACC CCAAATCACCTTCAGCCTAGCAGGTAGTGCATGGGTTTCTTGTTTATCGTTTGATTAGCATGGGTTTCTGGCAATTGGTG GTGGTGGTTTCTGAGGTAGGCTGAAAGAAGGAGGATGAGAATGAGGGTGGGGATTTCTGGTTGTTGATGGTGGACCAGAG AGGAGGGGCCTCGCTAATTTCGAACACTCCGCTTCTATCGCTGTCGCGCGCCATAGTTGCCACCACCGACCACTGGGACC AAAACCACAATGGATTCAGTTCAGAGTTTCACCATGGGTGAAGGGTATTTGTGGAAAAACAAAACTATCAAAGGGACAAA ATAGTACTTTCAAACCATTTATGAAGTGAACCACGGTGTGTCACCAAACTCACTGTCCCACCCAAGACATCGTCCATGAA ACACTATTTTCTAGGATCTAGATCCCCATGTGGTGATAGTAAGCAATTGATTTACACTTTTGGGAAATTTTGGTTTGTTT GGTGAGTCATTGTCTCATTGATTGACACTTTGCCGTGGTGGGTACATCACAGCTAGATAATAATTGAAAGGAAAAAAATT CTTAACAGATAATGTAATGGAGAAATGAGAAAAAGATAAAGATAGAAGGAAATGAGTTTAAAAAACATGTGTACTAAAAT CACGACTGATTTATCACATGTATTAATTTTTCATATTTTTCTTGTTTAAAATTTATCACAGACTCACAGTAAAGCATCCT CCAACACCTTTGGGGCTTTGCCTGAAAGTCAATCTCAAAGGTCTTCTTTGCCTGTACTCTGCCTAAAGCTAAAAAACAAT GGAGTCCCCATGGAAGAACTGTTTACCAAATGTGGTAATTAAAAATTAAAATTATATTTTATCAACAGAACACTGACTTC AAGTTTCAAACTATATATGTATAATGTATATACATTTATTTGTATATGAATTGATGTAGGAAATGGAAGATGGGGACTCA TTCAACATCAACAATGAAGAACATTTATTTCTTGAAGAGATCCTGCAACAGTTTGCTTTGTCCTCTGAGACCGGAAGTCT AGCAAATAACTTACTCAATAGCACCGACGGTGGGTCGAAGGGAGTAGCCATTGATGAGTCCCAACCTGCCCCTGAAACTC ATGACGACCAAGCCGGCGGTCGGAGAGAGAGAAGGAAAGGTAAGAGCTCTTCGGGGCATTTGGACCACGCTGTGGCCGAG AGAAAAAGAAGACTGGAACTGACCCAGGGATTCATAGCACTTTCTGCCTTGATTCCGGGCTTGAAGAAGGTTAGTCATTT TTTATATTATTGCACTAATTTTATTTTATTAATTGTTGCATACCTTTAAATTGCAATATTGGAGTTTTTACATCTATGCA TAAAGTCGTGTCCTAATTACTTTGAGTTTCCCTCTAGTGGAAAATGGAATTCTACTTTTAGTGTGTTTGGATTAGGTATT GAGAAGATAACATTGTATGACACCTTTCTAGGGTGTGTATACAGTCCAAGGGAAAAGATAGAAAAATCGAAAAAAATGAG AAAAGATGAAATTAAGAAAAAGTTGGTTCATTAGTTAAAATGATATTTATGAAAATATTGTACGTAATATTTAAGCTAGG ACTATTCAATAGTCGGATTCGGGTCAAAATTATCGGTTGTGTCGGGTGAATAGCAGCAAAACTCTAGGCCCGCCACCGTC CGATCTTAGGGTACGATTTTCTCAAGTTCGATTTGAACGAATCACAGGTATAACTCGGGTGGGGTTCACTCAGGTTTGGG GTTCATACTATAAAATCCATAAAATTTGGGAAAAGACAAGCGATGAGACTGAGAAAGAGAAACAATTCACATATTCACAT TCAGTAGCACAGAAGATTATTTCAAGAAGAAATTGAGGAAGAGCGGTGGTTATTGTCAATACGTGAAGATCATGCCTTGG ACTCAATCAAAGAGAGACGTTGAGGAAGAGCGGTGGTTGTTGTCCTCGATAGGTGAATATCATGCTCTGACTCAATTCCT CTGAAACCCTCCTTCTTCTCTTGTTCTTCTCTCGCCATTCCAACAACGAATGGAGATGGAGCTTTCATATTGTTTTCTAT GGATGGGTAGGTTGAAAGGAGAGGATAGAAGAGAAGAGGGTGGGAAGTGGAACATACAAAAGGGGGAAGATAAGCGACGA CTAGCTAGCTTCTGGGAAGGGAAGAGAAGAAGAGAAGCGGTGGTGGCTAGGGTTTCTCAATGTCATGAGTGATGGATATG GTTTCTGAGTTGTGAGTGGGGAGAGAGAAGTGAAGATGGTGAAGCAAAGTGTGTGATGAGTGACTAGTGACTAGGGTTTC TCAAGTCAGTGAATATTTAAAAATGTAGGGCTCACTAAAAAACTAGGTTGGGCTGATCTTGGTTTTTTAAAGACTTGCTT CCGTCGAGATGAAGCTCAAACCGAAATCGATCGGATTTTTTAAACACACCTATAAAGCCACGCGGTTTTGGTCAGCCCAT TTTTTGATACAATCGTAATTTTAGCACATAAAAAACATATTGTAAATGACTTGTATTGCGTGTTAGTTGAAAAACATAAT TCATAGATAAGTTAATTTTTTACATTATCCACCTTATAATTGCACAAAAAATTAAACGTAAAGATGAAAATTTGAAAGCC ACAAAAAATTAATTTCTTTCACAATTACTTAGCATGAGATGGTTTTCAATGTGTAGATTGACAAGGTCTCAATTCTTAAG GAAGCAACCACTTATGTGAAACAACTCCAAAATCGAGTAAAAGAGATGGAAGAACAAAGTGCCAAGAAGATAATCGTAGA GTCAATGTCGGTTCTCAATGACGCCGGTTTCCACTATGACCAAGGCATTGTCCCTTACAACATGAACTCTGATAACCGCC ACAAACTCAATGATGCAGCACTCCCTGAAGTTGAAGCAAGAGTGATGGAAAAGCAAGTGCTCATCCGAATCCATTGCGAC GGAAACCAAGACATTTTGCTCAAAACATTGTCCCACGTTACTAGTCTTGATCTCTCCATTGTAAGCCACACAATGTTACC ATTTCGGAAGATTTCTCTTGACGTTACTATTATTGCTCAGGTACACAACAATATATCTTAATTTGTCAACTAATGAAGAA TTATGATTTGCAAATTGCTCAATTTGGTTTTGTACAAACATAGACAATAACATATATGCTTTTGCAAATTGTTTAATATA TGTGACTATTAATTGCAGATGGGTGACAATTACAAGATAACTTTGAAGGATCTAGTGAGAAGCTTGAGAAAAGTTCTTTT GGAGTCAACTGACATGAAATAGTTGCGACCCATACATGCGAGAGTGATAAATGAGTCAATATACACGATTTAGTTTTATT CATGGAAAGTTTGAGAGTAGCATATAGCACATGCGTATATCGTATTTAAATCTCATACATATGTATGATTTCTAAGTTTT TTTTCTTCTTTCATACATATAAACGAGTTCACAAAATTGTTGTACTTGTCTCTCCCAAAAAGTGTTTTTCTTTTTTCAAA TTCAAACTTGTAACATTACTTAATATCGGGAGAAAAAAAGTAAAGGAGTCTCGAAGAAGAGAGAAACTGTGGTGGCAACG ACAGGTAAGGACCAATATTGGATGTTTTTGGAAG
CDS sequence (LotjaGi3g1v0005700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCCCCATGGAAGAACTGTTTACCAAATGTGGAAATGGAAGATGGGGACTCATTCAACATCAACAATGAAGAACA TTTATTTCTTGAAGAGATCCTGCAACAGTTTGCTTTGTCCTCTGAGACCGGAAGTCTAGCAAATAACTTACTCAATAGCA CCGACGGTGGGTCGAAGGGAGTAGCCATTGATGAGTCCCAACCTGCCCCTGAAACTCATGACGACCAAGCCGGCGGTCGG AGAGAGAGAAGGAAAGGTAAGAGCTCTTCGGGGCATTTGGACCACGCTGTGGCCGAGAGAAAAAGAAGACTGGAACTGAC CCAGGGATTCATAGCACTTTCTGCCTTGATTCCGGGCTTGAAGAAGATTGACAAGGTCTCAATTCTTAAGGAAGCAACCA CTTATGTGAAACAACTCCAAAATCGAGTAAAAGAGATGGAAGAACAAAGTGCCAAGAAGATAATCGTAGAGTCAATGTCG GTTCTCAATGACGCCGGTTTCCACTATGACCAAGGCATTGTCCCTTACAACATGAACTCTGATAACCGCCACAAACTCAA TGATGCAGCACTCCCTGAAGTTGAAGCAAGAGTGATGGAAAAGCAAGTGCTCATCCGAATCCATTGCGACGGAAACCAAG ACATTTTGCTCAAAACATTGTCCCACGTTACTAGTCTTGATCTCTCCATTGTAAGCCACACAATGTTACCATTTCGGAAG ATTTCTCTTGACGTTACTATTATTGCTCAGATGGGTGACAATTACAAGATAACTTTGAAGGATCTAGTGAGAAGCTTGAG AAAAGTTCTTTTGGAGTCAACTGACATGAAATAG
Protein sequence (LotjaGi3g1v0005700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESPWKNCLPNVEMEDGDSFNINNEEHLFLEEILQQFALSSETGSLANNLLNSTDGGSKGVAIDESQPAPETHDDQAGGR RERRKGKSSSGHLDHAVAERKRRLELTQGFIALSALIPGLKKIDKVSILKEATTYVKQLQNRVKEMEEQSAKKIIVESMS VLNDAGFHYDQGIVPYNMNSDNRHKLNDAALPEVEARVMEKQVLIRIHCDGNQDILLKTLSHVTSLDLSIVSHTMLPFRK ISLDVTIIAQMGDNYKITLKDLVRSLRKVLLESTDMK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 270 | 226 | 4.5E-69 | – | |
| MobiDBLite | 57 | 96 | 40 | - | – | |
| MobiDBLite | 68 | 96 | 29 | - | – | |
| Gene3D | 80 | 153 | 74 | 2.9E-14 | ||
| ProSiteProfiles | 90 | 139 | 50 | 13.573 | ||
| SUPERFAMILY | 94 | 150 | 57 | 9.95E-15 | ||
| Pfam | 95 | 140 | 46 | 8.0E-9 | ||
| CDD | 95 | 144 | 50 | 3.53591E-10 | ||
| SMART | 96 | 145 | 50 | 4.9E-12 | ||
| Coils | 129 | 156 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0005700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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