Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0005800 |
| Transcript ID | LotjaGi3g1v0005800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT2G22760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q1PF16|BH019_ARATH Transcription factor bHLH19; TrEMBL-Plants: tr|K7M402|K7M402_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0005800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:737311..742664) extracted from Lotus japonicus Gifu genome v1.2.
AATCACCCACTCAGGGCCCTTCTTCCTTCTGTGGAGACTAAATAGTCAAATACAATAATTGCATAACCCAAAGCCACTCA TCCAATCTTCCACTTTCTGATGATGGAGCAGTCATGGGAGAATTTCCCTCTTCATCAGATGGTAACACGCTAGCTATCAC AGTATTTTCAAAGCAGCATCATACATAGTGTCCTATTATGACCTAAATTAACATGTTCTGTTATGAAACAACTGTTACAG GAAATCTTGGGTAGTAGTGATGAGGATGAGGATGAGTTCTTAAGAGATATCCTGCTACCACCAGATTTGTCTCCTGACCA TGAATCTCAATCTTTGGTTGTCCAGAAAAAGCTTCAACCGAGAACATTCATTTTGTCTTTCGATAACTCCACGATTTTAC CTGCGAGTGCAACCTCAGAACGAGGTACACATTCTAATTCTAAATCTAGTAATAATTCTTCTTTGTCCTCCAGAAGAAAA AGGAACCTGGAAAAAAATCATGTGAGCTTGGAACCAAAATTACCAAGCACCACCACTCAAAGAGGAAAGAAGAATAGAAG CGATTCTCAGACAACGGATCATGTTATGGCGGAGAGAAAACGGAGACAGGATTTGACAGAGAAGTTCATAGCACTTTCAG CTACTATTCCTGGCTTGAAGAAGGTAATGGGATTAATCCCTTTTCTTTTTTAACATCTGTTGTTTCAAGGAAGGAAATAA ACACCGATTACAATTTGTTTTTTTATATTGGAAAATTATTATTCAATTTTTTAGTTCTTAATTTGTTTTTCTGTTTAATT TATTATTGATTATTATTACTTTATTTATAAAATAAATTATAAAATAATATTTAATATCATTTTAATTTTTAATTCGATCT CCGGAAATCATTTATTGGATATATATCCACAGTTTTACGAATGGGTAAATTTAGATCCCTCATGTGCTAATCTCACATGA CATGTAAAAGATTTTGACCTTTAATTATTTTTTTCCATGAAATCTGAAGGTTAAGATCTCTACATGATATGATAATGTGA GATTTCCACACGAGGGATACGAATCCTTCTCAATGTAAAAGTTAAAAAAAACTACTATTATATATAAGTGTTTGAAATAT TTTATTTTTTAAGAAACGAAAAGAGAAAGGTAATTTTGATTATTATTTTCTCCAAAGAGTTAAATAAGATTGCTTTTCTT TAAATATTTAATTAACATTCATTTAGACTATGCTTGTTTTTATCTTTAAATGATAGCTCAAGTGGTAAGAGTTAGAGACA TAAAGTTGGGGTAGAGAGGTCCAAGAATCAATCCCTAGTGTGCGCAATTTATGTTTTCAATGTAAAAAAAAAGACTATGC TTGTTTTTAAAAATAAAATTTGAGAAATGAATTTAAGAGCTTGACAAATTCAGAAGCCAGAAAAAATTTGTGGTGGAGTT TACACAATTACATTTAATTCTTAGAAAACAAAACATTGCTTAATTTTCCGATGGACCAAAGAAAAATTAAATTCCTGGCT AATTAGTTTGGAGCAAGGTAGTCAAATCGAGATACGTATCGTGTATCGCTAGACCCTAATTCCGTGTCGCGTATCGTATC GTAACGTGTATCGTAAGATACGGACACAAAAAAAATTAAGTCATAAATTAAATAATATACTAATATATCATCTAAATATA GTTCAAAATAATCAAAGATCCAAGTCATAAGTAGAAAAATAGTCTCACAAAGTTCAAGTTCAACCTAATTCCAAGCCATA AGCCAAACTAAAGTACTAAACATCAAAGAGATGAAATTAAATGCCCACTCCCTAATTCCAAGCCATTAAAGGGCTGCTGA AGTTGAACGTGAAACATGAAAGGGCTGCTGAAGTGAAGTTGAACGTGAAAGGGTGAAAGAATCAAAGAAAACATCACTTT TTAGAGCAATTTACTAATTTTTAATGAAATTAAATGCCCACTCCCTAATTTTTCTAGGGGAGTAAGATGAAACGGCATTT GAAAAACTGTTTTTGTATCGTATCGGGATACGTATCGTGCGATACTCATGCGATATGTGCGATACAGGTCACGATACGAA CACAAAAAGATACATACATGGGATACGTATCGTTTGGTTGATTTTCGTATCGTATCGGGATACGTATCGTGCGATACTGA CTACCATGGTTTGGAGAATGTCTAAACATTTGCAGGCCCACTACCGTTTAAATCTAACCCAACCTAAAAATACAATCAAA CAATTTTAAACTTAGTAGCTATTTTTTTTCTTAGTGTCAACTTTGATTTGTACATCAATTGTTGATTTTATTTCTTCTTT TTTCTTCTAGTAAATTGAGCCAATTTTTTTCTTTAATTTTTCAAATTAAAACCTAGATTAAAATAAAACCCACTTGTTTT TTAATCTCTCTTCTATTTTCTGAGGTTGTTTTTTTCCATTTTTCTTTCATGTATGATATTATTTTATAAAAAATAAGGTT CATAAGCTATAACTATCTATTATTTTTGTCATCCATCTGTAAAAAAATGGGGGAAAAGGAGTTTGCAAATCTTCACAGTC GTCCTTAGCCAAGGATGCACCAGATAACGAAGGAATATACTATCTGGATTCTGGACACTTCCAACTTCAAGACATAATTT TTTTTAAGACATAATACTTAATAATGATGAAGAAAGTGAAAAGCGTAGAATAAAGTAAAAAGGCAAGGTCCAAAGTCCAA ATGATAACATCGCAAAGGAGAAAAGAAAAAGTGAAAACACAAATGGTTTCAAAGTTTAAATATTGCACTTTTTTAAAAAA ATATAATTGATAAAAGTTTAGTGTTAAATAAAAATGCATTTCTTAAAAAATATTGCACTATTTTTATCAATCTCAAATAT TTTAGTTCAAAGAAAAATGCATTTCTTAAATTTATTGTAAATATTTTAAAAAATAAAATAAAAATAGTGTTAAATAAATT TTTTTTATTACATAATTAATAATCTTGTTTTAGTTCCTACCAAAAGATTTATTTAATTTAGGTTATTGTGAATATAATAA AAATATTGTGGTTTCAATTCCTCTTGAGAGACTAAAGAAAAATTTAAAACAAATTATTTCATATTTTTAAGGATTAAATC GAATAAATTTTGGGTGGTTTTTGCTCGGGCTATTAGGTTTGTTCTCTTTTGTCTGTTTGGGTCTTTTGGATGATTTGCTC TTTATTCTGTAATAGATCAGTTGCGTTTGACTTTCCTACTCGAGTGACATGCTCTTAGACTTTAATTTATTAATATATAT TTTCACTTTCTAAGAAAAATTGAATAAATTTTAATTGGGTAATAAGTCAAAAAAAAATTGATAGCAAATAAGTCAATTCT TTTATAGGAATAAAAATTATAATTAACCCTAGAAAATAGGTGGGTGGATAGAATTTATTTATTTAACCATATATTTCTTT ATATATATGGGCTTTCCATATCTACATCGAACACTGCATTTTTATGAATAAAATGTTTGTGATAAAATAGTTGTGCCCTC TAATTGGGCATTTCTATAAAGTTTTTTTTGTTGGTCAAAGGCATTTCTATAAAGTTCAACTTTCACCTTTTCCAAAATGA CTTATCGCTGTCAGATGCCAAAAGCTGATTGGACACAAGCACGAGAGCGGAAAGTAGGGATGTGATCACATTGTTCATCA AGTTAGTTTGTGGTTCAAAATTTTTATATTTAATTTTTTTACTCACAAATTATTTATAAAATTATTCTAAATTAAGAACA AGTGCAACTTAAATTGTTTCTATGTTACAAATGATTAATGAACAATAATTAATAAACGAACATACAGTTAATATAGCATA CATCCAACATAGTTCACATTTCTAGTGATTTATAGTTGCTGCAAATATTAACAGAGTCAAAAAAATTTACTAATCTTCAT ATTCAAAGAATATGTGCGAAACACATGATAATTATTGCCGATGATGATTAATAGACGGACAAGACCTCAATAGTTCACGG AGCTATCGATTATGTGAAGCAACTGAAAGAGCGCGTGACAGAGTTAGAACAACAGGGAAATGGGAGAGGCAAAGAATCAA TGATAGTTCTGAAGAAAATGAATCTGAGTGCAAATCGTGAAGATACTCCTACCACATCAAGTGAAACAAATAATTCTGAG GATTTGTGTAGACCCAGAGAATTGTTCCCTGATGTTAAAGCAAGGGTGTTGGAGAATGAGGTGCTTATTGTGATCCATTG TGAGAGGGAAAATGGCATTGAGCTCAAAATATTGGACTTACTTGAAAATCTTCGTTTGTGTGTCACCGGAAGCAGTGTCT TGCCGTTTGGGAATTCAACTCTCAGTATTACTATCATTGCTCAGGTACGCATAGCTAGAGTTTCATGTTCTACATTTAAA TGTTGAAAAATGATACACATGACATGCAATAATTATCTTAAATTATCAATGGTCAAAATAAATAAAAATTAAATTAAGTA GAAGTTTTCGGTTTAAGTTTATGTGAATGCAAATGCTGGCTAAGTATATAATAAGAACAACATTATTGTTTATAATGGTC ATACTCAACTTAAACATGATTACCACAATGAGATGTATAATTGTCCTTCTGCTTGCTTTAATCTATTTGACTTATAAAAA AAATTAGAAAAATGAATTATAATTGAATAATTGTGTCAAACTTCTATACCTTACCGATGCACAAAAATTAAACTCTTATT CTCAAACACAAATTTTTATTACTTAACTTAAAAAAAAACTTAATTCTATCACATTTAATTTAATGATATATAATTATATC GATCCTAGCTCATTCTTCAACATTTTCTAGGTAAAGTAATTGATAAAACAAAATGTTTGGTGGGAAATAATAATTATATG TCACGTGTTGTATTGTACGGTAAAAATTGTGTATTGAATTTTAACAACGTACTGTGTCTGTCTTTGTGGATGGCAGATTG GTGACGCGTGCGAAAACACGACGGTGCCTGATATAGTGGACAACGTCAGACAAGCTCTGTTGAACGACGTCACCACCGAT CGTTTTCGTCCTCAACTATCTTATTAACAACTTGCTTTTTTTAACCCTTTGTGCTCATGAGAATGAAGTTGTTTGTATGA TTAAAAGTGTTTGTTTCGTTTCAGTTTATAAGTATTTTCACTTAATGAATGTTTATAGTCTCTTTCACATTTAAGACGTT CACATCTGTGATCTTAAATTTTTATGCAACAGACATAAAACCAAACATAGCCTAACTAAAATGTTTAAGTAATTTGTGAG CTTAACTCGTGTAGAATCACTCTCAATAACAGTGGAGGTCCAAACTTAACACGTTATCTATTAACTATTGCGAG
CDS sequence (LotjaGi3g1v0005800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGCAGTCATGGGAGAATTTCCCTCTTCATCAGATGGAAATCTTGGGTAGTAGTGATGAGGATGAGGATGAGTT CTTAAGAGATATCCTGCTACCACCAGATTTGTCTCCTGACCATGAATCTCAATCTTTGGTTGTCCAGAAAAAGCTTCAAC CGAGAACATTCATTTTGTCTTTCGATAACTCCACGATTTTACCTGCGAGTGCAACCTCAGAACGAGGTACACATTCTAAT TCTAAATCTAGTAATAATTCTTCTTTGTCCTCCAGAAGAAAAAGGAACCTGGAAAAAAATCATGTGAGCTTGGAACCAAA ATTACCAAGCACCACCACTCAAAGAGGAAAGAAGAATAGAAGCGATTCTCAGACAACGGATCATGTTATGGCGGAGAGAA AACGGAGACAGGATTTGACAGAGAAGTTCATAGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGACGGACAAGACCTCA ATAGTTCACGGAGCTATCGATTATGTGAAGCAACTGAAAGAGCGCGTGACAGAGTTAGAACAACAGGGAAATGGGAGAGG CAAAGAATCAATGATAGTTCTGAAGAAAATGAATCTGAGTGCAAATCGTGAAGATACTCCTACCACATCAAGTGAAACAA ATAATTCTGAGGATTTGTGTAGACCCAGAGAATTGTTCCCTGATGTTAAAGCAAGGGTGTTGGAGAATGAGGTGCTTATT GTGATCCATTGTGAGAGGGAAAATGGCATTGAGCTCAAAATATTGGACTTACTTGAAAATCTTCGTTTGTGTGTCACCGG AAGCAGTGTCTTGCCGTTTGGGAATTCAACTCTCAGTATTACTATCATTGCTCAGATTGGTGACGCGTGCGAAAACACGA CGGTGCCTGATATAGTGGACAACGTCAGACAAGCTCTGTTGAACGACGTCACCACCGATCGTTTTCGTCCTCAACTATCT TATTAA
Protein sequence (LotjaGi3g1v0005800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEQSWENFPLHQMEILGSSDEDEDEFLRDILLPPDLSPDHESQSLVVQKKLQPRTFILSFDNSTILPASATSERGTHSN SKSSNNSSLSSRRKRNLEKNHVSLEPKLPSTTTQRGKKNRSDSQTTDHVMAERKRRQDLTEKFIALSATIPGLKKTDKTS IVHGAIDYVKQLKERVTELEQQGNGRGKESMIVLKKMNLSANREDTPTTSSETNNSEDLCRPRELFPDVKARVLENEVLI VIHCERENGIELKILDLLENLRLCVTGSSVLPFGNSTLSITIIAQIGDACENTTVPDIVDNVRQALLNDVTTDRFRPQLS Y
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 308 | 307 | 5.8E-100 | – | |
| PANTHER | 2 | 308 | 307 | 5.8E-100 | – | |
| MobiDBLite | 70 | 91 | 22 | - | – | |
| MobiDBLite | 70 | 135 | 66 | - | – | |
| MobiDBLite | 105 | 119 | 15 | - | – | |
| Gene3D | 111 | 186 | 76 | 2.5E-14 | ||
| MobiDBLite | 120 | 135 | 16 | - | – | |
| ProSiteProfiles | 123 | 172 | 50 | 14.392 | ||
| SUPERFAMILY | 123 | 186 | 64 | 6.41E-15 | ||
| Pfam | 126 | 173 | 48 | 5.0E-8 | ||
| CDD | 128 | 176 | 49 | 1.15006E-8 | ||
| SMART | 129 | 178 | 50 | 7.7E-11 | ||
| Coils | 162 | 182 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0005800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…