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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0007600 |
| Transcript ID | LotjaGi3g1v0007600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q9M2N5|DSLE_ARATH Zinc finger BED domain-containing protein DAYSLEEPER; TrEMBL-Plants: tr|K7M8S6|K7M8S6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0007600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:889800..893129) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTTTTTCTTCAGCCGCAAGGACCGAGTACTCCGCAGCATTAATCGCCTTCCTTCGTATTGTAGGTTTCTCTCCCGCC GCCACTCTCCGCCGCGCCACCACTCTCTCCGCCCAAAGGTTCATTCTCTCTCTCTCTCTCTCTCTCTTTGTTTCCGTTTG TTGTTCAAAAGAATCAAATACAGTGATGCTTTTACTGGTTCATTCATGGCTGATTCAATTCGTTTTTCGCTATCTTTGGT TGCTTGATGTGATGGTGGATTTGTCTTGTTTCCCGCTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTTT TCACTTTTCTTAGACCTAGCCTTCACTTTAATTTAACGATTGCATTCACTCATGAACATGTATATGTGAAAAAAAACTAA TCTTGATTATTCAATTTTATATGTTAGGGTTTTTGGCCATAATGTATTTGGTTAGGGATACCTTCTGTGGTGAAAATATA TTAATTCTGGGCATACCCTGATAATAAGTTATAAATATGATGGCACCGACATTTGGTGCCATGGGAATTTGAGATTGCGA GTTAAGTCCGGGGGCTCGTTGGCGTTAGTATTGTGCCATGTGTGTTTGTGTGTCTATATGTGTACATATGGAGCATATTA GTTGAGAATATGGGAGGGATTAATGTTCACCATCCATGTGTAGTTATATAGTCAAGATTAGTTTCCATCACTTGTGTTCT CGCTTGATGCATCCTCGTGTAAATACATATATGGGGTATAAGAATGAATAGAGGAGAAGGGCATTTCGAAATGAAACATG CTAGAGTAGATATAACACTTTTCAAGGTTTTGACTTTTTTTGTCTAATGCTTTCAAGGTGAATTGTCTTAAAGTTACTTC CTTTGCATGGGTTGAGAACTTCAACTGCTTTTTAATCGCGCTTTTCTAATGTTTCACTCATTTTTGTTTTTTCGTTTTTG TTTTATAGGATTATATCTGCAGTCTTGTCATGGAGTGCCCTGATTCCGACGCACAACCCAATTGGCGTAGTAGAAAGAAA TCTGGTGTCTGGGAACACTTCACTGTGAAAAGTGATGAATCTGGATGTTCCAAGGCTTACTGTAAAAGTTGCAAAAAACC ATTCGCTTATATCAATGGTTCAAAGCAATCTGGAACCAGCCATCTGAGGAGACACATTTCTCTGGGAATCTGTCAGAAAA ATCAACAAACCCTGTGCTCCAAAACTGGTGCTGATCCACCAAAGAAGAAACGAGCAAGAGCGAAAGTTGCTGCTATTTCA TTTGATCAGGAGCGCTGCAACGATAAGATAGCTAAAATGATTATTTTGCATGACTATCCACTTCATATTGTAGAACACCG AGGTTTCATTGATTTTGCGCGGGCACTTCAACCACAGTTCAACCCGCTGAGTTTAAATGCTGTCCAAGAGGATTGTGTTG CCATATACCTCAGAAAGAAGCAAAACCTGCTGAAACTTATTGATGGGATTCCTGGACGAGTCAACCTTACCTTGGACTTA TGGACTTCAGATCAGACATCAGCCTATGTTTTTCTTCGAGGTCACTTTGTTGATTGTGATTGGAACTTACATCATCCCAT TCTTAGTGTTCTGAAGATGCCTTTTCCTGATTCTGGTGGTTCCCTAAATCAATCCATAAACACCTGCCTACATGACTGGC ATTTGGAGGGTCGGATATTTACTCTTGTGCTTGATAAATTCTTCTTCAGTGAGACTTTGATTGGAAATCTGAGAGGTCTT TTCTCTATTAAGAACCCTGAGATCCTCAATGGTCAGTTATTAAGCCAGAACTGTTATTCTCGTGTGCTTACTCGCCTTGC ATCAGATGCGCTTTGGGCAATGAGAGAAACTATTGACAAAGTTCGCAAGAGTGTGAAGTATGTGAAATCTTCTGAATCTC GTGAACAGAAGTTTCTCAAGCTGAGGCAAAAGCTTCAACTTTCCAGTAAGAGCAACCTTTTAATTGATGACCAAACTAAG TGGGATACAGTTTACCACATGCTTGTTGCTGCCTGTGAATTAAAGCAAATCTTTTGCTGCTTTGGTGTCGGTGATCCTGA TTGCAGAATGACTCTAAAATTAGATGACTGGAAGCAGGTGGAAATTCTTTGCACATATCTAAAGTGTTTGTATGATGCAG CAAACATTTTAACTGTGCAACCATACCCAACTGCCAACTTATTTTTTCCTGTAGTATCAAAGCTTCAGGTGGAGTTCACT CATGCATCCCTAAGCCAGGATGCTTTTTGTCGTAATTTGATCATGCCTTTGCAAGAAAAGTTTGACCAATATTGGAGAGA AAACTGTTTCGTCTTGGCAATTGCTGCTGCGATGGATCCAAGGTATAAAATGAAAATTGTTGAGTCCACCTTTGCTAACA TCTATGGAGAGAATGCTGAGCTATGGATAAGAATTGTTGAGAATGGACTTCATGAGATATTCCTTGAATATAATAGTGTA GATGTGCTTTCTTTGACCCCATCAAATGGGGATGAAGGGGATGAGTCTATAACAATGAAGACGGACCCTTTTCAAAAAGG GTCATTGGAGACTAAGCCATTTCAGTTTCAGTCAGGGTCATTTGAGATTGAGCCATTTCCAGAAGGGTCATTTGATTTTG ATGGATCTCCTTTTGATGCTGAAGATGGACTTCCTGATATTGAATTTTACATATCTGATTTCATTAGTAACCCATCATTC AAGTCAGAATTGAGTGAGTATTTGGAAGAGCCTCTAGAGCCAAGAGTACCAGACTTTGATATTCTGAGATGGTGGAGAAT AAATGCATTGAAGTACCCAACATTATCTAGAATGGCATCAGATATTTTGTCTATCTCTGCATCTACTCTCCCTGCAAGTT CTGTTTTTGATACAGAAATTAGGAAAATGGATAGCTATCGGAGTTCATTAGACTCTCCTACTCTTGAGGCCCTAATTTGT ACCAAGGACTGGTTCCGGTATGAATCATTACCAATCAATGTTTCAAATGATCTTGTGAAAGTGGAATATTAGGGGTAGCT TTTCTCACTTGGGGATAATATTATCAAGTAGTTTGTAGGTATTCAAGTTTTGATATCGGTCAAGTAATTCATGTTTCAAG TTTTGATATATTTTTTACTTGTTCATAATATAAGGTTGATTCTATTCTAGTTATTTTGTCCAAAACCATTTTTGTCCACA TCAGATCAATGAATCATAGGTTCAATGAAAAACCTGGAAGTTTTTAGGCATCGACCTAATTTACTGTGTTCGGCATAAAA GGATCTTGTATGAATATGAGCTTGTAATTTTATTAAGAATCTTTTTTGTG
CDS sequence (LotjaGi3g1v0007600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTGCCCTGATTCCGACGCACAACCCAATTGGCGTAGTAGAAAGAAATCTGGTGTCTGGGAACACTTCACTGTGAA AAGTGATGAATCTGGATGTTCCAAGGCTTACTGTAAAAGTTGCAAAAAACCATTCGCTTATATCAATGGTTCAAAGCAAT CTGGAACCAGCCATCTGAGGAGACACATTTCTCTGGGAATCTGTCAGAAAAATCAACAAACCCTGTGCTCCAAAACTGGT GCTGATCCACCAAAGAAGAAACGAGCAAGAGCGAAAGTTGCTGCTATTTCATTTGATCAGGAGCGCTGCAACGATAAGAT AGCTAAAATGATTATTTTGCATGACTATCCACTTCATATTGTAGAACACCGAGGTTTCATTGATTTTGCGCGGGCACTTC AACCACAGTTCAACCCGCTGAGTTTAAATGCTGTCCAAGAGGATTGTGTTGCCATATACCTCAGAAAGAAGCAAAACCTG CTGAAACTTATTGATGGGATTCCTGGACGAGTCAACCTTACCTTGGACTTATGGACTTCAGATCAGACATCAGCCTATGT TTTTCTTCGAGGTCACTTTGTTGATTGTGATTGGAACTTACATCATCCCATTCTTAGTGTTCTGAAGATGCCTTTTCCTG ATTCTGGTGGTTCCCTAAATCAATCCATAAACACCTGCCTACATGACTGGCATTTGGAGGGTCGGATATTTACTCTTGTG CTTGATAAATTCTTCTTCAGTGAGACTTTGATTGGAAATCTGAGAGGTCTTTTCTCTATTAAGAACCCTGAGATCCTCAA TGGTCAGTTATTAAGCCAGAACTGTTATTCTCGTGTGCTTACTCGCCTTGCATCAGATGCGCTTTGGGCAATGAGAGAAA CTATTGACAAAGTTCGCAAGAGTGTGAAGTATGTGAAATCTTCTGAATCTCGTGAACAGAAGTTTCTCAAGCTGAGGCAA AAGCTTCAACTTTCCAGTAAGAGCAACCTTTTAATTGATGACCAAACTAAGTGGGATACAGTTTACCACATGCTTGTTGC TGCCTGTGAATTAAAGCAAATCTTTTGCTGCTTTGGTGTCGGTGATCCTGATTGCAGAATGACTCTAAAATTAGATGACT GGAAGCAGGTGGAAATTCTTTGCACATATCTAAAGTGTTTGTATGATGCAGCAAACATTTTAACTGTGCAACCATACCCA ACTGCCAACTTATTTTTTCCTGTAGTATCAAAGCTTCAGGTGGAGTTCACTCATGCATCCCTAAGCCAGGATGCTTTTTG TCGTAATTTGATCATGCCTTTGCAAGAAAAGTTTGACCAATATTGGAGAGAAAACTGTTTCGTCTTGGCAATTGCTGCTG CGATGGATCCAAGGTATAAAATGAAAATTGTTGAGTCCACCTTTGCTAACATCTATGGAGAGAATGCTGAGCTATGGATA AGAATTGTTGAGAATGGACTTCATGAGATATTCCTTGAATATAATAGTGTAGATGTGCTTTCTTTGACCCCATCAAATGG GGATGAAGGGGATGAGTCTATAACAATGAAGACGGACCCTTTTCAAAAAGGGTCATTGGAGACTAAGCCATTTCAGTTTC AGTCAGGGTCATTTGAGATTGAGCCATTTCCAGAAGGGTCATTTGATTTTGATGGATCTCCTTTTGATGCTGAAGATGGA CTTCCTGATATTGAATTTTACATATCTGATTTCATTAGTAACCCATCATTCAAGTCAGAATTGAGTGAGTATTTGGAAGA GCCTCTAGAGCCAAGAGTACCAGACTTTGATATTCTGAGATGGTGGAGAATAAATGCATTGAAGTACCCAACATTATCTA GAATGGCATCAGATATTTTGTCTATCTCTGCATCTACTCTCCCTGCAAGTTCTGTTTTTGATACAGAAATTAGGAAAATG GATAGCTATCGGAGTTCATTAGACTCTCCTACTCTTGAGGCCCTAATTTGTACCAAGGACTGGTTCCGGTATGAATCATT ACCAATCAATGTTTCAAATGATCTTGTGAAAGTGGAATATTAG
Protein sequence (LotjaGi3g1v0007600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MECPDSDAQPNWRSRKKSGVWEHFTVKSDESGCSKAYCKSCKKPFAYINGSKQSGTSHLRRHISLGICQKNQQTLCSKTG ADPPKKKRARAKVAAISFDQERCNDKIAKMIILHDYPLHIVEHRGFIDFARALQPQFNPLSLNAVQEDCVAIYLRKKQNL LKLIDGIPGRVNLTLDLWTSDQTSAYVFLRGHFVDCDWNLHHPILSVLKMPFPDSGGSLNQSINTCLHDWHLEGRIFTLV LDKFFFSETLIGNLRGLFSIKNPEILNGQLLSQNCYSRVLTRLASDALWAMRETIDKVRKSVKYVKSSESREQKFLKLRQ KLQLSSKSNLLIDDQTKWDTVYHMLVAACELKQIFCCFGVGDPDCRMTLKLDDWKQVEILCTYLKCLYDAANILTVQPYP TANLFFPVVSKLQVEFTHASLSQDAFCRNLIMPLQEKFDQYWRENCFVLAIAAAMDPRYKMKIVESTFANIYGENAELWI RIVENGLHEIFLEYNSVDVLSLTPSNGDEGDESITMKTDPFQKGSLETKPFQFQSGSFEIEPFPEGSFDFDGSPFDAEDG LPDIEFYISDFISNPSFKSELSEYLEEPLEPRVPDFDILRWWRINALKYPTLSRMASDILSISASTLPASSVFDTEIRKM DSYRSSLDSPTLEALICTKDWFRYESLPINVSNDLVKVEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 680 | 678 | 0.0 | – | |
| PANTHER | 3 | 680 | 678 | 0.0 | – | |
| ProSiteProfiles | 15 | 75 | 61 | 11.639 | ||
| SMART | 15 | 71 | 57 | 4.6E-14 | ||
| SUPERFAMILY | 18 | 66 | 49 | 3.81E-6 | ||
| SUPERFAMILY | 158 | 664 | 507 | 2.12E-56 | ||
| Pfam | 398 | 494 | 97 | 4.7E-26 | ||
| Pfam | 580 | 662 | 83 | 2.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0007600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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