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IPR003656

Source: InterPro

Description

IPR003656 is a Zinc finger, BED-type.

<p>The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [[cite:PUB00007561]].</p> <p>Some proteins known to contain a BED domain are listed below:</p> <ul> <li>Animal, fungal and plant AC1 and Hobo-like transposases.</li> <li>Caenorhabditis elegans protein dpy-20, a predicted cuticular-gene transcriptional regulator.</li> <li>Drosophila BEAF (boundary element-associated factor), which is thought to be involved in chromatin insulation.</li> <li>Drosophila DREF, a transcriptional regulator for S-phase genes.</li> <li>Tobacco 3AF1 and tomato E4/E8-BP1, which are light- and ethylene-regulated DNA binding proteins that contain two BED fingers [[cite:PUB00018276], [cite:PUB00018277]].</li> </ul>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 94

Transcript Name Description Predicted domains Domain count
Lj0g3v0039869.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357515439|ref|XP_003628008.1|
Domains
12
Lj0g3v0066049.1
– Os05g0239150 [Oryza sativa Japonica Group] gi|297723849|ref|NP_001174288.1|
Domains
7
Lj0g3v0076209.1
– Os01g0290300 [Oryza sativa Japonica Group] gi|297596578|ref|NP_001042787.2|
Domains
14
Lj0g3v0078389.1
– HAT dimerisation domain-containing protein-like [Oryza sativa Japonica Group] gi|55297521|dbj|BAD68478.1|
Domains
12
Lj0g3v0080219.1
– Oligoribonuclease [Medicago truncatula] gi|357493709|ref|XP_003617143.1|
Domains
7
Lj0g3v0083979.1
– BED zinc finger,hAT family dimerization domain isoform 5 [Theobroma cacao] gi|508721630|gb|EOY13527.1|
Domains
7
Lj0g3v0091359.1
– OSJNBa0010H02.12 [Oryza sativa Japonica Group] gi|38345474|emb|CAD41225.2|
Domains
7
Lj0g3v0102539.1
– CCP-like protein [Medicago truncatula] gi|357476541|ref|XP_003608556.1|
Domains
7
Lj0g3v0105489.1
–
Domains
7
Lj0g3v0123199.1
– PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] gi|359489960|ref|XP_002269399.2|
Domains
4
Lj0g3v0125559.1
– BED zinc finger,hAT family dimerization domain [Theobroma cacao] gi|508701084|gb|EOX92980.1|
Domains
9
Lj0g3v0138429.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136239|gb|ADN34075.1|
Domains
6
Lj0g3v0166439.1
– Elongation factor 1-alpha [Medicago truncatula] gi|357443375|ref|XP_003591965.1|
Domains
8
Lj0g3v0167439.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
6
Lj0g3v0188699.1
– BED zinc finger,hAT family dimerization domain isoform 1 [Theobroma cacao] gi|508721626|gb|EOY13523.1|
Domains
14
Lj0g3v0211649.1
– Elongation factor 1-alpha [Medicago truncatula] gi|357443375|ref|XP_003591965.1|
Domains
9
Lj0g3v0267359.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136199|gb|ADN34037.1|
Domains
13
Lj0g3v0318569.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136239|gb|ADN34075.1|
Domains
12
Lj0g3v0319489.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136239|gb|ADN34075.1|
Domains
11
Lj0g3v0358949.1
– BED zinc finger,hAT family dimerization domain [Theobroma cacao] gi|508773663|gb|EOY20919.1|
Domains
9
Lj1g3v3458780.1
– HAT family dimerization domain-containing protein [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331231421|ref|XP_003328374.1|
Domains
6
Lj1g3v3458780.2
– Nudix hydrolase 23 [Arabidopsis thaliana] gi|18405878|ref|NP_565965.1|
Domains
3
Lj1g3v3458790.1
– Ac transposase [Puccinia graminis f]. sp. tritici CRL 75-36-700-3] gi|331228953|ref|XP_003327143.1|
Domains
5
Lj1g3v4450500.1
– Os10g0170600 [Oryza sativa Japonica Group] gi|297610165|ref|NP_001064234.2|
Domains
10
Lj1g3v4450500.2
– Os10g0170600 [Oryza sativa Japonica Group] gi|297610165|ref|NP_001064234.2|
Domains
11
Lj1g3v4578800.1
– PREDICTED: zinc finger BED domain-containing protein 1-like [Glycine max] gi|356561757|ref|XP_003549145.1|
Domains
14
Lj1g3v4579350.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
7
Lj2g3v0581790.1
– PREDICTED: CAP-Gly domain-containing linker protein 1-like [Cicer arietinum] gi|502171520|ref|XP_004515051.1|
Domains
8
Lj3g3v0044250.1
– BED zinc finger,hAT family dimerization domain [Theobroma cacao] gi|508778642|gb|EOY25898.1|
Domains
13
Lj3g3v0428350.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
6
Lj3g3v0718540.2
– Os01g0290300 [Oryza sativa Japonica Group] gi|297596578|ref|NP_001042787.2|
Domains
9
Lj3g3v0964240.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357497585|ref|XP_003619081.1|
Domains
7
Lj3g3v1015490.1
– CCP-like protein [Medicago truncatula] gi|357476541|ref|XP_003608556.1|
Domains
7
Lj3g3v1309430.1
– Oligoribonuclease [Medicago truncatula] gi|357493709|ref|XP_003617143.1|
Domains
8
Lj3g3v2517860.2
– Os11g0613900 [Oryza sativa Japonica Group] gi|297612178|ref|NP_001068267.2|
Domains
7
Lj4g3v1881760.1
– PREDICTED: zinc finger BED domain-containing protein 1-like [Glycine max] gi|356561757|ref|XP_003549145.1|
Domains
11
Lj4g3v1881770.1
–
Domains
13
Lj4g3v1881770.2
–
Domains
13
Lj5g3v0817430.1
– HAT family dimerization domain containing protein [Medicago truncatula] gi|357498113|ref|XP_003619345.1|
Domains
10
Lj6g3v0974680.2
– Uncharacterized protein TCM_001680 [Theobroma cacao] gi|508700914|gb|EOX92810.1|
Domains
3
Lj6g3v1126410.1
– DNA binding protein [Cucumis melo subsp]. melo] gi|307136199|gb|ADN34037.1|
Domains
13
Lj6g3v1371890.1
– Oligoribonuclease [Medicago truncatula] gi|357493709|ref|XP_003617143.1|
Domains
8
LotjaGi1g1v0238100_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0238100_LC
Domains
8
LotjaGi1g1v0238100_LC.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0238100_LC
Domains
8
LotjaGi1g1v0258900_LC.1
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|Q9D9R0|RN125_MOUSE E3 ubiquitin-protein ligase RNF125; TrEMBL-Plants: tr|A0A1D5U7L1|A0A1D5U7L1_WHEAT Uncharacterized protein; Found in the gene: LotjaGi1g1v0258900_LC
Domains
6
LotjaGi1g1v0276900_LC.1
– HAT transposon superfamily; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|O64146|DPOL_BPSPB DNA-directed DNA polymerase; TrEMBL-Plants: tr|A0A0S3RDX3|A0A0S3RDX3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0276900_LC
Domains
11
LotjaGi1g1v0276900_LC.2
– HAT transposon superfamily; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|O64146|DPOL_BPSPB DNA-directed DNA polymerase; TrEMBL-Plants: tr|A0A0S3RDX3|A0A0S3RDX3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0276900_LC
Domains
11
LotjaGi1g1v0284700_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RH96|A0A151RH96_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0284700_LC
Domains
11
LotjaGi1g1v0297300_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0297300_LC
Domains
11
LotjaGi1g1v0297300_LC.4
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0297300_LC
Domains
11
LotjaGi1g1v0511400.1
– BED zinc finger and hAT dimerization domain-containing protein; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi1g1v0511400
Domains
17
LotjaGi1g1v0525000_LC.1
– HAT family dimerization domain-containing protein; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|Q09840|AMY2_SCHPO Alpha-amylase 2; TrEMBL-Plants: tr|V7AH83|V7AH83_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0525000_LC
Domains
2
LotjaGi1g1v0582100_LC.1
– Zinc finger BED domain-containing protein DAYSLEEPER; TAIR: AT2G42070.1 nudix hydrolase homolog 23; Swiss-Prot: sp|Q0JMB2|RSLE4_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 4; TrEMBL-Plants: tr|A0A0K9QH16|A0A0K9QH16_SPIOL Uncharacterized protein; Found in the gene: LotjaGi1g1v0582100_LC
Domains
9
LotjaGi1g1v0695100.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q9M2N5|DSLE_ARATH Zinc finger BED domain-containing protein DAYSLEEPER; TrEMBL-Plants: tr|V7CA32|V7CA32_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0695100
Domains
15
LotjaGi2g1v0060900.1
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|Q5CWQ7|DRE2_CRYPI Anamorsin homolog; TrEMBL-Plants: tr|A0A0R0F953|A0A0R0F953_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0060900
Domains
13
LotjaGi2g1v0084800_LC.1
– HAT dimerization domain-containing protein; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|O62830|PPM1B_BOVIN Protein phosphatase 1B; TrEMBL-Plants: tr|K7L6X7|K7L6X7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084800_LC
Domains
5
LotjaGi2g1v0084800_LC.2
– HAT dimerization domain-containing protein; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|O62830|PPM1B_BOVIN Protein phosphatase 1B; TrEMBL-Plants: tr|K7L6X7|K7L6X7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084800_LC
Domains
5
LotjaGi2g1v0084800_LC.3
– HAT dimerization domain-containing protein; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|O62830|PPM1B_BOVIN Protein phosphatase 1B; TrEMBL-Plants: tr|K7L6X7|K7L6X7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084800_LC
Domains
5
LotjaGi2g1v0175600.1
– BED zinc finger family protein; TAIR: AT1G79740.1 hAT transposon superfamily; Swiss-Prot: sp|Q0JMB2|RSLE4_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 4; TrEMBL-Plants: tr|K7LE93|K7LE93_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0175600
Domains
9
LotjaGi2g1v0215100.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi2g1v0215100
Domains
17
LotjaGi3g1v0007600.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q9M2N5|DSLE_ARATH Zinc finger BED domain-containing protein DAYSLEEPER; TrEMBL-Plants: tr|K7M8S6|K7M8S6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0007600
Domains
13
LotjaGi3g1v0088200_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.2 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0088200_LC
Domains
10
LotjaGi3g1v0088200_LC.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0088200_LC
Domains
10
LotjaGi3g1v0146800.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RYB6|A0A151RYB6_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0146800
Domains
14
LotjaGi3g1v0182200.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0182200
Domains
17
LotjaGi3g1v0182200.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0182200
Domains
17
LotjaGi3g1v0257700.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|A0A0B2QXC0|A0A0B2QXC0_GLYSO Putative AC transposase; Found in the gene: LotjaGi3g1v0257700
Domains
15
LotjaGi3g1v0257700.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|A0A0B2QXC0|A0A0B2QXC0_GLYSO Putative AC transposase; Found in the gene: LotjaGi3g1v0257700
Domains
15
LotjaGi3g1v0263100.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0263100
Domains
13
LotjaGi3g1v0263100.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0263100
Domains
13
LotjaGi3g1v0263100.3
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RXE3|A0A151RXE3_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0263100
Domains
13
LotjaGi3g1v0292800_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P03010|TRAC9_MAIZE Putative AC9 transposase; TrEMBL-Plants: tr|M5X4E3|M5X4E3_PRUPE Uncharacterized protein; Found in the gene: LotjaGi3g1v0292800_LC
Domains
10
LotjaGi3g1v0354000_LC.1
– BED zinc finger,hAT family dimerization domain, putative; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0354000_LC
Domains
13
LotjaGi4g1v0262700.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT1G18560.1 BED zinc finger and hAT dimerization domain-containing protein; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|K7MLB0|K7MLB0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0262700
Domains
11
LotjaGi4g1v0262700.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT1G18560.1 BED zinc finger and hAT dimerization domain-containing protein; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|K7MLB0|K7MLB0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0262700
Domains
14
LotjaGi4g1v0275000.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q9M2N5|DSLE_ARATH Zinc finger BED domain-containing protein DAYSLEEPER; TrEMBL-Plants: tr|A0A0B2P2Y4|A0A0B2P2Y4_GLYSO Putative AC transposase; Found in the gene: LotjaGi4g1v0275000
Domains
14
LotjaGi4g1v0275000.2
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q9M2N5|DSLE_ARATH Zinc finger BED domain-containing protein DAYSLEEPER; TrEMBL-Plants: tr|A0A0B2P2Y4|A0A0B2P2Y4_GLYSO Putative AC transposase; Found in the gene: LotjaGi4g1v0275000
Domains
14
LotjaGi4g1v0339100.1
– HAT transposon superfamily, putative; TAIR: AT4G15020.1 hAT transposon superfamily; Swiss-Prot: sp|Q6BU94|PRP46_DEBHA Pre-mRNA-splicing factor PRP46; TrEMBL-Plants: tr|V7CZ73|V7CZ73_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0339100
Domains
11
LotjaGi4g1v0460100.1
– Zinc finger family protein; TAIR: AT1G30970.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|Q9C5G0|SUF4_ARATH Protein SUPPRESSOR OF FRI 4; TrEMBL-Plants: tr|G7LCD2|G7LCD2_MEDTR C2H2-type zinc finger protein; Found in the gene: LotjaGi4g1v0460100
Domains
8
LotjaGi4g1v0460100.2
– Zinc finger family protein; TAIR: AT1G30970.1 zinc finger (C2H2 type) family protein; Swiss-Prot: sp|Q9C5G0|SUF4_ARATH Protein SUPPRESSOR OF FRI 4; TrEMBL-Plants: tr|G7LCD1|G7LCD1_MEDTR C2H2-type zinc finger protein; Found in the gene: LotjaGi4g1v0460100
Domains
8
LotjaGi5g1v0286000.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|A0A151R6M7|A0A151R6M7_CAJCA Putative AC transposase; Found in the gene: LotjaGi5g1v0286000
Domains
21
LotjaGi6g1v0006700.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|B9FJG3|RSLE1_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 1; TrEMBL-Plants: tr|K7KE04|K7KE04_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0006700
Domains
15
LotjaGi6g1v0063100_LC.1
– Transcription initiation factor TFIID subunit 2; TAIR: AT1G73960.1 TBP-associated factor 2; Swiss-Prot: sp|Q8LPF0|TAF2_ARATH Transcription initiation factor TFIID subunit 2; TrEMBL-Plants: tr|K7KNH3|K7KNH3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0063100_LC
Domains
14
LotjaGi6g1v0063100_LC.3
– BED zinc finger,hAT family dimerization domain; TAIR: AT4G21640.1 Subtilase family protein; Swiss-Prot: sp|Q0JMB2|RSLE4_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 4; TrEMBL-Plants: tr|A0A0J8CKV8|A0A0J8CKV8_BETVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0063100_LC
Domains
6
LotjaGi6g1v0063300_LC.1
– HAT transposon superfamily, putative; TAIR: AT4G15020.1 hAT transposon superfamily; Swiss-Prot: sp|Q8ZV44|TRPB_PYRAE Tryptophan synthase beta chain; TrEMBL-Plants: tr|A0A0B2PIZ3|A0A0B2PIZ3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0063300_LC
Domains
10
LotjaGi6g1v0063300_LC.2
– HAT transposon superfamily, putative; TAIR: AT4G15020.1 hAT transposon superfamily; Swiss-Prot: sp|Q8ZV44|TRPB_PYRAE Tryptophan synthase beta chain; TrEMBL-Plants: tr|A0A0B2PIZ3|A0A0B2PIZ3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0063300_LC
Domains
10
LotjaGi6g1v0063300_LC.3
– HAT transposon superfamily, putative; TAIR: AT4G15020.1 hAT transposon superfamily; Swiss-Prot: sp|Q8ZV44|TRPB_PYRAE Tryptophan synthase beta chain; TrEMBL-Plants: tr|V7CZ73|V7CZ73_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0063300_LC
Domains
8
LotjaGi6g1v0063300_LC.4
– HAT transposon superfamily, putative; TAIR: AT4G15020.1 hAT transposon superfamily; Swiss-Prot: sp|Q8ZV44|TRPB_PYRAE Tryptophan synthase beta chain; TrEMBL-Plants: tr|A0A0B2PIZ3|A0A0B2PIZ3_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0063300_LC
Domains
10
LotjaGi6g1v0146000_LC.1
– BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|P08770|TRA1_MAIZE Putative AC transposase; TrEMBL-Plants: tr|M5X4E3|M5X4E3_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0146000_LC
Domains
11
LotjaGi6g1v0159700.1
– Zinc finger BED domain-containing protein DAYSLEEPER; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RYP2|A0A151RYP2_CAJCA Putative AC transposase; Found in the gene: LotjaGi6g1v0159700
Domains
14
LotjaGi6g1v0159700.2
– Zinc finger BED domain-containing protein DAYSLEEPER; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RYP2|A0A151RYP2_CAJCA Putative AC transposase; Found in the gene: LotjaGi6g1v0159700
Domains
14
LotjaGi6g1v0217200.1
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|A8F530|SECA_PSELT Protein translocase subunit SecA; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200
Domains
13
LotjaGi6g1v0217200.2
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|A8F530|SECA_PSELT Protein translocase subunit SecA; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200
Domains
13
LotjaGi6g1v0217200.3
– HAT transposon superfamily; TAIR: AT3G17450.1 hAT dimerization domain-containing protein; Swiss-Prot: sp|B8E2F5|TRMFO_DICTD Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO; TrEMBL-Plants: tr|A0A0L9T6Q4|A0A0L9T6Q4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0217200
Domains
11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.06