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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0008100 |
| Transcript ID | LotjaGi3g1v0008100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin system component CUE protein; TAIR: AT5G32440.1 Ubiquitin system component Cue protein; Swiss-Prot: sp|Q9BXX2|AN30B_HUMAN Ankyrin repeat domain-containing protein 30B; TrEMBL-Plants: tr|C6TF13|C6TF13_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0008100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:915180..918381) extracted from Lotus japonicus Gifu genome v1.2.
ACGGGTAGAAGATAGTGAGTGACGATAGAAACAATACAAGACAAGAAGACGCACGAAACTTTCCCTACAGGGCAGATAAC CCTGGTTTTCGTTTTCCTCTCCAACACCCCAAAGACAAGTATATAACAACAACAACATCCCACCACATCGCAGAGAGAAG AAGAATAGAAGAAAAATCGGAAAATTCCCCTTTCAAACCCTAATTTTGTTCAGATTGAATTGGAATCAATCATCAATTTG GGGAAGAACAGAGGCAAAAAAGGAAGGAGAAGAAGAAGAAGAAAGACGAGGCACTCGTGAACGATGTCTGCTGCGGTGTG CGGAAGCAAGAGATCTTTCTTCGAAGACCTTCCTCCTTCACCACCTACCACTGTTTCCAAGAGGCTCCGTTGTTCTTCCT CCTCTTCCCCTATTCGTATTTCCCTTCCCTCCACCACCCTCCTCGATCACCTTCGCTCCATTTTCCCTCACATGGATGAT CAGGTTCCCAATTTGATTTCACAAATTACTATTATTGTTATTATCCTAATATCATTATCATTCATTGCTGTATGAATCGG TTAACGTGTTGTGAACTGTAATTGATGGATGATTTCGATTTTAGGTCCTTGAGAGGGCACTTCAAGAATGCGGCAATGAT CTTGATGCTGCTATCAAAAGCCTGCACGGTCTGTGTTTGGGATCTGCTGATGATAATTCTGGAACTGCTCCGCAATCCGA GGCTAATGTCGAGACAGGTACCATAATGTTTTATGCAAAATCATATAGCTGATTGTCACTTTTTGTTTTAAGGGAAGAAG CATGTTATGATTCAATAGGATTTTTTTTATGTGTTTTTATGCAATTTCATTTGGATGTTTGTTATCGGGTCTAAGTTGTT TATTAGCATTTTGTGACTTAATCGTAAAGAAATTGAGTGTGTTTGTGTTTGTTACTAGGTGGAGGTGCATTGGAAGATAA TGGGGATGCTGCTGCTGCTTCTGCATCTGCTTCGGCTTCTGGGAATCAGGCGGCTTCCAACAATCTGCCTGCTGATGGAG CGGAATGGATTGACTTGTTCGTCAGGGAAATGTCGTTTGCTGCTAGTGTGGATGATGCCAGGGCACGTGCTGCTAGGCTG CTTGAGGTTCTGGAGAAATCGATCACTGCGCATGCAGGCTCCGAGGCAACGACTGCTCTTCAAAGTGTATGTTTTCGTGC TGTGATTGCTTTTATTATTTTGTACACCCCATTAGGATTTTGGTCTTGTGAATTTGTGAATTCGGTTATTGAGTAGAATA GACTAGTTTGCTGTGGATACAACTGAGTTAGTTAGCCAGGTGCCTGCTGCATTTGAAATTTGTATTAAAACAACCCTGTC TTTGATGTCTTGTCATCTTGCTGTAGTTAAGTAAATGTGTTGATATATGATAGGGGAACAGAATCAACAGATTATTGAAG CCGTGGTTGGATGATAGATATTAATTACTGAAGGATTGAGCTTGTATAGCAGTTGTGAGCAGATGTTTTTTTTTTCAGGA AAATTTGATGCTGAAGGATCAAATTGAAGTGTTGACTAAGGAGAAAAATTGTTTCAAAAGTGCATTTAGAATCCAGCTTG AACGCCTTTCTGATTATGAGGCAAAGAACCAAGAGTTGCAGCAGTTGAAGCAGTTGGTGTCTCAATATCAGGAGCAGATC AGAACTCTTGAGGTTAGAGATTGGCTTTATCTCCGTTCTTATCACACATTTCACCCTTTGATCAAAACATTTCAATACTT ATCATAACTTGGTTTTAAAACTTTGGGAATTCAACTAACTTCTAAATAAACTTTTGAATCCCTCCCCTCTGTATAATGGA AGAGGGAAGGAGGAAATGATGTGAATGCTTAAATTGTATTAATAGACATGGCATAGTGATGATGACCATGGAGATTGATG GTCCATTCCTAAAGCGTAATCTTTAATATTTATTGATACATGGAAGTGCATCTAAGGCCTTAGATTAGCTTCCATGTAAT CCTCATCATAGGATTGAGACTTGGTAATAAATCTACCATGGTACCACCTACAATCAATCACAGGTCTTTCAAGTTATTGT GGGGATTTTTTCGTTCACATGTTGAAAAGTGGGTTGAGCCAACTCTGGATTTATTGCATCTTAACATAATGCTGAAATTG GTCCATTGTTTTAATCAAAGTGGTTACTAGGGAAAAAATGGTCAATGAATCGTATGTTTAGAACTTTAGATAATTTTTTC TTTCATCAGAATCATTTATGAAACCCAGAAGTTACTCAATGATGCTTCTCCCCAGAATTGATTCTGGCTTCAGAATGAGA TGTATAAGAGTTTCCAAACATGCATGGAAATCTAGATTAACCCCCCCCCCCCTGAAAAAATGTATCTTAATGACTTTTTT GTGCATGCTGATGACTGCTTTATCTTTGGCTTTGTTGACAGGTGAGTAACTATACTTTGAGAATGCATTTGAACCAGGCA CAACAGTACAACCCTTTTCCTGGGCGTTTCCCTCCCGATGCCTTCTAAATTCTAATGCAATCAATTTGTAGAGTGTTATC ATAATCGAGGCAGTAAAATAGCTGTATCCGGTTGATTGATTATATCTGGTGTTTTTTTTTATCCATAAAAAAGTATGTAT TGTTTATTGTTACAGTTTGTGTAGCTCCTGTAGGCCAAGGAATAGTAGCTGGTCCTAGTTCAGGGGTATCTTATCCATGT GGAATAGAATGACATTATAAGTAAGATTATTCGTGAGTTAATAATTCGGTTATTTATTCCCCTCTGGATTGGGGGTTTTT TAGCATCAATTATACTGTAATCAAATGCTCAAGATCAGTTTGGGAGTTGGGAAAGTTAGTCTGTTACCATAAGTCATGTT TTATTGCCCTTCGGAGGCTTGACCTTTCAAATGCATTGTTTTTCTATGAAAATAAACTGGAGCGAAGCTTAATGAAAACT ATTTAGTATTTACATATCCGCCTCTAGACAAAGGAACGAAGAGAAAGGAGAATGCTCTTTGTGCGATAGAGTAAAGCCAA ACCAAAAGGACCAACAACTATACCTCTCTTCCCTCTAGTTGATGCCGATGTATTGGCTTCTATGCCTCACTTTGATTAAT TAATGATTCAGCTTCTTAAAAAAAAAAAAAAAACTATACCTCTCTTTCTTTTCCTCAAGAAGTTGACTAAGTGACTTTAG AC
CDS sequence (LotjaGi3g1v0008100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCTGCGGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGACCTTCCTCCTTCACCACCTACCACTGTTTCCAAGAG GCTCCGTTGTTCTTCCTCCTCTTCCCCTATTCGTATTTCCCTTCCCTCCACCACCCTCCTCGATCACCTTCGCTCCATTT TCCCTCACATGGATGATCAGGTCCTTGAGAGGGCACTTCAAGAATGCGGCAATGATCTTGATGCTGCTATCAAAAGCCTG CACGGTCTGTGTTTGGGATCTGCTGATGATAATTCTGGAACTGCTCCGCAATCCGAGGCTAATGTCGAGACAGGTGGAGG TGCATTGGAAGATAATGGGGATGCTGCTGCTGCTTCTGCATCTGCTTCGGCTTCTGGGAATCAGGCGGCTTCCAACAATC TGCCTGCTGATGGAGCGGAATGGATTGACTTGTTCGTCAGGGAAATGTCGTTTGCTGCTAGTGTGGATGATGCCAGGGCA CGTGCTGCTAGGCTGCTTGAGGTTCTGGAGAAATCGATCACTGCGCATGCAGGCTCCGAGGCAACGACTGCTCTTCAAAG TGAAAATTTGATGCTGAAGGATCAAATTGAAGTGTTGACTAAGGAGAAAAATTGTTTCAAAAGTGCATTTAGAATCCAGC TTGAACGCCTTTCTGATTATGAGGCAAAGAACCAAGAGTTGCAGCAGTTGAAGCAGTTGGTGTCTCAATATCAGGAGCAG ATCAGAACTCTTGAGGTGAGTAACTATACTTTGAGAATGCATTTGAACCAGGCACAACAGTACAACCCTTTTCCTGGGCG TTTCCCTCCCGATGCCTTCTAA
Protein sequence (LotjaGi3g1v0008100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAAVCGSKRSFFEDLPPSPPTTVSKRLRCSSSSSPIRISLPSTTLLDHLRSIFPHMDDQVLERALQECGNDLDAAIKSL HGLCLGSADDNSGTAPQSEANVETGGGALEDNGDAAAASASASASGNQAASNNLPADGAEWIDLFVREMSFAASVDDARA RAARLLEVLEKSITAHAGSEATTALQSENLMLKDQIEVLTKEKNCFKSAFRIQLERLSDYEAKNQELQQLKQLVSQYQEQ IRTLEVSNYTLRMHLNQAQQYNPFPGRFPPDAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 273 | 273 | 2.1E-123 | – | |
| PANTHER | 1 | 273 | 273 | 2.1E-123 | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| ProSiteProfiles | 42 | 88 | 47 | 11.765 | ||
| Gene3D | 42 | 88 | 47 | 1.3E-8 | – | |
| SUPERFAMILY | 44 | 87 | 44 | 1.36E-9 | ||
| CDD | 46 | 80 | 35 | 7.54024E-11 | – | |
| Pfam | 47 | 80 | 34 | 6.5E-8 | ||
| MobiDBLite | 91 | 132 | 42 | - | – | |
| MobiDBLite | 118 | 132 | 15 | - | – | |
| Coils | 210 | 247 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0008100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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