Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0009800 |
| Transcript ID | LotjaGi3g1v0009800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DCC family protein, chloroplastic; TAIR: AT1G52590.1 Putative thiol-disulfide oxidoreductase DCC; Swiss-Prot: sp|Q9SSR1|Y1259_ARATH DCC family protein At1g52590, chloroplastic; TrEMBL-Plants: tr|I3SNW3|I3SNW3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0009800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1082018..1083701) extracted from Lotus japonicus Gifu genome v1.2.
TGTTCCAATTCCATGGCTCTTCTGCTTCCTCCCTCTGCTGCTGTTGGACGCTTCAGCTCAACCGTGTCCTCACTGCGTCC ACGAAAACTTAACAACACCTTTGCCACTCTCTCACAAACCCGGAGTGAAGAAGCCAACTGGGTTGAAGCAACTTCCAGCT TCTTCGACCAAGACAAACGACCCATCATGTTGTTTGATGGTAATCAAAGCTTGTTCTTCCTTCTTTACCTTCGATTACAT GGTACTAATGCTTGAGTTTGATAAGAATTGTTGCTTGTGATTGTGATGCAGGTGTGTGCAATTTGTGTAATGGGGGTGTG AAGTTCGTTCGTGATAATGATCGAAATAAGTAAGATACCCATCTTCTTTTTCTTGTAAAGTTTGTTGCTTTTTGATTTTT TTATAGTAAAAATTATAGCATGTGTGGTTCCATGAAATGTTTGAAATCACTTTTTGTTAGTTATATGTTTGTAAGCTTCT ATGTTTAGAGGAGAAGTGCTTTTGAAAGAAGTTACTAATAGTGTGTGTTTGATTCCACTTTTGGTCAATTCTCATTAACT AGATTACTTTATGTGATTATATAAATGTTTGACAATCGACTTAGAGTATTGATTTTAGTCCCCACAGCAATTCCGCGGAG AAGCTATAGACCGGCTCCTGCGGTGGATATAATCAATTGTGAGATTTTCATAACTGAATTTCATAACATTACTCTATAAA AATCACTTTTCCCATAAACGCATCCAGGCATAAACCACTTCACTTTTGGTTCACTTCTACTATAATCAATTTTACCAAAA TAAATTCTGAAAACACTGATCCAAGCATGCACAAATTAGCTTTTGTGAAGGGAGAAGTGATTCCAAAAGATTAAAATGTG AAATTAAACATGCTATTTATCTTCTGAGTAAAAACAAACCACTCCTAAATAAATGAGATAGAAAGATTGAGAGATCTTAG ATATTTAGTGAACTTGGATTCTTTGTTTTTATTTAGTGAGTGAAAATGGAACTTGATTGGTTGTTTCATTTGTTTTATAT TTTCTGTTGGGTTTGACAGGACAATTAGATATGAACCTCTTCAGAGTGAAGCAGGTAAAATGTTACTCAGGAGATCTGGA AGAGCCCCTGATGATATCTCAAGTGTTGTGCTTGTTGAAAATGACAGGTACGCTTAATCGCTTATTGAAGGTTCATAACT CGAAACTCAAGTATCAGCTTGAGACTCTAGATTTTGATGTTATTAGGATCCTTCTCAACCATTTCCATGCAAATAAGATC CTGTTTCTGTTAAACTTTCTGTGATGGATAATGGATTGCTATAATGTTCATGAGGAAAGGAAATTTATTATTGCAAATTG TTAAAATGAAGAATTAGCAGTGAAAAATATAACTTCCTTGTTTATTCTAGATCATACATAAAGTCAGAAGCTGTGCTGAA GATAATGGAATACATAGACTTTCCCTTTCCTCAGCTAGCATTTCTTGTTCAATTTGTGCCTCTGTAAGTAGCATTTTTTC CGAGTTCCTTTGTCAGTTTTATCATGCTATTTTATTGCTGAAAGGGATCAGGTTTGTTAATATATACTGTGGACCACTGC AGGTTTATCAGGGATTTTGCTTATGACAATGTTGCAAACAATCGTTACACGATATTTGGTCGTTCAGAATCATGTGAAAT ATAG
CDS sequence (LotjaGi3g1v0009800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTCTGCTTCCTCCCTCTGCTGCTGTTGGACGCTTCAGCTCAACCGTGTCCTCACTGCGTCCACGAAAACTTAA CAACACCTTTGCCACTCTCTCACAAACCCGGAGTGAAGAAGCCAACTGGGTTGAAGCAACTTCCAGCTTCTTCGACCAAG ACAAACGACCCATCATGTTGTTTGATGGTGTGTGCAATTTGTGTAATGGGGGTGTGAAGTTCGTTCGTGATAATGATCGA AATAAGACAATTAGATATGAACCTCTTCAGAGTGAAGCAGGTAAAATGTTACTCAGGAGATCTGGAAGAGCCCCTGATGA TATCTCAAGTGTTGTGCTTGTTGAAAATGACAGATCATACATAAAGTCAGAAGCTGTGCTGAAGATAATGGAATACATAG ACTTTCCCTTTCCTCAGCTAGCATTTCTTGTTCAATTTGTGCCTCTGTTTATCAGGGATTTTGCTTATGACAATGTTGCA AACAATCGTTACACGATATTTGGTCGTTCAGAATCATGTGAAATATAG
Protein sequence (LotjaGi3g1v0009800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLLPPSAAVGRFSSTVSSLRPRKLNNTFATLSQTRSEEANWVEATSSFFDQDKRPIMLFDGVCNLCNGGVKFVRDNDR NKTIRYEPLQSEAGKMLLRRSGRAPDDISSVVLVENDRSYIKSEAVLKIMEYIDFPFPQLAFLVQFVPLFIRDFAYDNVA NNRYTIFGRSESCEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 20 | 8 | - | – | |
| PANTHER | 19 | 175 | 157 | 5.0E-75 | – | |
| PANTHER | 19 | 175 | 157 | 5.0E-75 | – | |
| Phobius | 21 | 175 | 155 | - | – | |
| Pfam | 60 | 169 | 110 | 8.9E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0009800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…