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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0010300 |
| Transcript ID | LotjaGi3g1v0010300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal peptidase I; TAIR: AT1G52600.1 Peptidase S24/S26A/S26B/S26C family protein; Swiss-Prot: sp|Q9BY50|SC11C_HUMAN Signal peptidase complex catalytic subunit SEC11C; TrEMBL-Plants: tr|I3ST46|I3ST46_LOTJA Signal peptidase I; Found in the gene: LotjaGi3g1v0010300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1141650..1145548) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAATATGTGCTCCCGGGTACAGCGGTTTTTTGGCCGAGTCTAGCCGGTCCAGATCGAGTCGCTTGCATGACCGATCC AATACTCGACCCGAACCGGTTTAATAACGCTGGTTAAGTGAGTCAGTTAAAGCCCCTGAGAAACGTTACGAGAGTGGCAG CATAACACTATTGCAGCAACACACACACACAAACACACAGAGAGAAGAAGAACAAGAAGAAGAAGCTGCTGCAATGGGTT GGATCGGTGAGACTGTGGATTCTGTCAAATCTCTTCAGATCCGCCAGGTCCTCACCCAGGCTGTTACTCTCGGTTCGTTC CCTCTCTCTGAATTGATCGAAATCCATTTTTTTGTTGTTGAAAATGTAGTGTCTTTGTGTTATCTATGGTCTCACTGGGT GCTATAATGATCTGGGTCGACTCTGAAATCAGAGGAAATTTAACTTTTACAATCAAAATCGTTACTTTGCTCCATTTAGG GTTTATGTCAATAGCTCTTAGTATTATGATTGGGAATGGTATGGAACATGTGTTCTTCAATCTTTGAATGTGGTGTTTAT CTTTGATTGTTCCAGTAGAGGGGAATTCACAGGTTATTGATTCCAGGCTTTAATTTTCAATCACTTTTCTTATTGAGAAG CTGGATTTGTTGAATTTCTCCCCTTTTGCTCAAGTTAGGTTTTTTTGTCCGCTGATGTTAGTTTAAGTTGATTATATGAA GACCATAGAATTGCTTGATTGCTTCTAGACCATAATGCAATTGGTTGATAATTGCTCCATTTATGTTGTGCTGATTTTGT CACAAGTATTGTCAGCATCCTGGATTTGTGGTCTATCTATAGAGGTTTTGTTTACTGAGGTAGTTTTGTACTCTTCCTCA GGTATGATTGTCACATCTGCACTAATAATATGGAAGGCGTTGATGTGTGTCACTGGCAGTGAATCGCCTGTTGTCGTTGT TCTTTCTGGAAGTATGGAACCAGGATTCAAGCGGGTATGTTAATTTTCCATACATGAATGCTTCAGTAAGGTTGTGTCAA ATATTTCCTACGATAAATAGTATTTTGTGTGTCTTATATAGTTTTGATTCTGCATTTTTGCTGATTGTTTGCTGAATACG TCAGCAAGAAGAGAGAACCTGCATATATTTGCAAACTATTTGTCAACATATTTTGTCTGTTTCTTTGTGGAGTTGACAAA TGTTGGCTTTCATGCTTTAAATTCAGGGGGACATCTTGTTCTTGCGCATGAGTAAAGAACCAATTCGTGCAGGGGAGATT GTGGTGTTTAATGTGGATGTAAGTTCAACTCTCAGTTTTATTCTTTATAATTTTCTTAATCCAATTCATATTTGTGACAT CATTGACTTAAAAAAGAGATTTTTTCAGTCGTATTGGTTAACGTTAAGAAGTTATGAATATTACATGCCAATCTGTGTTT AAAGTTAAATCTTCTCATGTGTTGTCATCAAATTGATTATTAGACTCTCTCGCCTTTAGGACGAGTTTCTTCGTACTAAA TAGCTGCACACTTATGTAATATCATTATGTATGACATCTTTCTACCTTAATTTGTTTGTTTATCTTGTGATTGCTACTTT CTCTCAAGAAGTTGCCATTGTTCTTGCTGATTTTTTTTTTTTTTAATATTTTTCTCACTATTTTCCTTATCTTACTGACT GACATGCTCTATGGGCATGTACCCTTTTTTCTTCAGGGACGTGAGATTCCAATTGTTCATCGTGTAATCAAGGTAAGAAC CCATTTTGTTGTTCTCATATCATGAATGTGTCGGAATGCCTATTGAAACAGTAACTGCACATCAGCTTACGCAGTTTGAT GTGTGTACGAACCCATTTCTTTATCCAGGTCTTGTCAGCTTAGCTACTGTTTTAAGTTTTCCTTATTTATCATACCTTAT ACATTAGAATTTCCTCCTTCACGCTGCCCCCCCTGCTCTTGCTTGAACTACTTTGATGAATTTTGTTGTCACTGACAACA TTGTGGAAACTGGAGAGTATCAAGAATCAGAAACTTCATTCCAAAGAAAAACTTCCTGAATCCCCCTAGCTTTAATTCTC TTCACTGGTTTAACATTCTTTATGCTTTCTTAAATATTCACTTATTATTATCATGCTGTTAACAATAATTAAGATTGTCC TCTTTGGGAGTCTAATACTTGATCGTTTTGTAGGTACATGAAAGGGAAGATAATGGAGAGGTTGATGTTCTCACGAAAGG TGGTGACTAGTTCATGAATCATGACTAAAAACTTTTACAGACATAACTAACAATGCTTATTTTAGGCCCTGCATTATAAA AGCCGAGCCTTGTTGCAAATTTGAAATTCATTCTTTTATCCAATATTCTACTTCATAATTTTTTTTTTGTCCTCCATTTT AGTTGGTGACTATCTGTTGATCTAATGATCTCCCTTCTCATATTTTGCTCTCTTTGGCAGGAGATAACAACTATGGAGAT GACAGGCTTCTGTATGCTCATGGTCAGCTTTGGCTGCAAAGGCACCACATTATGGGTAGAGCTGTCGGGTATAGCATTTC TTTTATGACACTTGCTCCACTCATTGCAAATGTGTTATCTAAATCTATCTTGAGAATGTCATTTCTCACTTGTGGCAATC CCATATTGATAATTGAATATAAAGGTTGCATGCCTGAGTTCTCTGTGTGACTGTGACATTAAGGTAATGCGCATTTTAAT GCGACGTAGTTAATGTCAGAAGAAGAGAAACTACCCATATGTGAAATATCCAACAATTGTTGAACCTTTCTACGTAATAT ATGCCAAGGTTTAATTGTAGTTTATCCTATGGTGATACCTGCAGTTCTGCATTCTCTTGTCTTATAGTATGAAGTAATTT AGTTGAATTTCTCTGTTTTTTTTTGGTATTTTGTTACCATTGCTTATATTTGTCAATGGCAGGTTCTTACCTTATGTTGG CTGGGTGACAATTATTATGACAGAAAAGCCTATCATCAAGGTTTGTTTTTTGCTCTAACAATCTATTGTGTTATAATTTA GCTGAAGCTGGTTATTTTATTTATGTTAATGGTGAAACTTATAGTTTTGTCTTGATATCTGATTTTCTCGCTAACCAACC ACATGATTTATACTATGAAATAAATCATGACCATTTTAAAGATGCACAACATAGATTTTGTGATTTGACTCTTTTGTGTA ATTCACTTTAGACAGAAAAAAATGAGGAGCTATATCTATTCATAAGAAAATTAATGGAATAGATAAAAGCAACTCCATAA ATTTGCTATACTTTTACATTGATTTGACTATTGACCATTGTCCATTGATTTTCTAATCAGTGGCTATAACTCTTTGTTTT CCTGTCTAAAGTAAATATTGGTTTAGAGCAATGAAATCCTAGATTTTCAATTGCAGCAAATATGAACTGTGCTAACACTG TCTCTTCTTTGCAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCGAAAGACTAAACGATGAATCTAAAT CAAACTGAGGTCTAAACCTCCGAGAGAACTCTGGGCAGATATCATACTTTTCTTGAACTTGAGAGTGTCATTTTGTACCA TTAACAACATAATGTTAAGAATTAATGCAAAGTTTCTTGCCTAGTTCCTTATACTGTATATTGGTGCAGTTTAAGCTTAT GTTGCTAGGTGAGTCAATCTTGGGAAATGCCTCCTTGTTCATACTTCAAATGCCCATTTATTGAATTGATACCATAAACA TTGGACTTAACTTTAAGACAAATTTTGAGTTAATCGTTTTAGTCCCTAAAAGATAATAGTCACTTAAAGATGCAGATCAA CATTACTGCCCATTTGATTATAAATGTGTTTACTACAGTATTCATTTAATATATTCAGG
CDS sequence (LotjaGi3g1v0010300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGGATCGGTGAGACTGTGGATTCTGTCAAATCTCTTCAGATCCGCCAGGTCCTCACCCAGGCTGTTACTCTCGG TATGATTGTCACATCTGCACTAATAATATGGAAGGCGTTGATGTGTGTCACTGGCAGTGAATCGCCTGTTGTCGTTGTTC TTTCTGGAAGTATGGAACCAGGATTCAAGCGGGGGGACATCTTGTTCTTGCGCATGAGTAAAGAACCAATTCGTGCAGGG GAGATTGTGGTGTTTAATGTGGATGGACGTGAGATTCCAATTGTTCATCGTGTAATCAAGGTACATGAAAGGGAAGATAA TGGAGAGGTTGATGTTCTCACGAAAGGAGATAACAACTATGGAGATGACAGGCTTCTGTATGCTCATGGTCAGCTTTGGC TGCAAAGGCACCACATTATGGGTAGAGCTGTCGGGTTCTTACCTTATGTTGGCTGGGTGACAATTATTATGACAGAAAAG CCTATCATCAAGTATATTCTCATTGGTGCTTTGGGGTTGCTCGTGATAACTTCGAAAGACTAA
Protein sequence (LotjaGi3g1v0010300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGWIGETVDSVKSLQIRQVLTQAVTLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEPGFKRGDILFLRMSKEPIRAG EIVVFNVDGREIPIVHRVIKVHEREDNGEVDVLTKGDNNYGDDRLLYAHGQLWLQRHHIMGRAVGFLPYVGWVTIIMTEK PIIKYILIGALGLLVITSKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 180 | 180 | 3.0E-111 | – | |
| PANTHER | 1 | 180 | 180 | 3.0E-111 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 20 | 40 | 21 | - | – | |
| TIGRFAM | 29 | 176 | 148 | 1.3E-27 | ||
| SUPERFAMILY | 35 | 146 | 112 | 1.83E-13 | ||
| Phobius | 41 | 138 | 98 | - | – | |
| CDD | 49 | 143 | 95 | 1.54306E-17 | – | |
| Pfam | 53 | 104 | 52 | 3.0E-11 | ||
| PRINTS | 53 | 68 | 16 | 3.4E-9 | ||
| PRINTS | 112 | 123 | 12 | 3.4E-9 | ||
| Phobius | 139 | 156 | 18 | - | – | |
| TMHMM | 139 | 156 | 18 | - | – | |
| Phobius | 157 | 161 | 5 | - | – | |
| TMHMM | 161 | 178 | 18 | - | – | |
| Phobius | 162 | 178 | 17 | - | – | |
| Phobius | 179 | 180 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal peptide processing | The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. | ||
| Molecular function | Peptidase activity | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0010300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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