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LotjaGi3g1v0011400.1

Overview

Field Value
Gene ID LotjaGi3g1v0011400
Transcript ID LotjaGi3g1v0011400.1
Lotus japonicus genome version Gifu v1.2
Description Aspartate racemase; TAIR: AT1G15410.1 aspartate-glutamate racemase family; Swiss-Prot: sp|O58403|RACD_PYRHO Aspartate racemase; TrEMBL-Plants: tr|Q2HVX3|Q2HVX3_MEDTR Asp/Glu racemase; Found in the gene: LotjaGi3g1v0011400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:1253734..1257194) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTTTTAAGCCTCTCTCTTGATTCTTGAGTAATTTAGATGAATCCAACAAAGTGAGTGAAGCTCTGGATGCAGACAAA TGAAGATAAAGTATATTATCAATAATTTAATATGGTCTCAACTCTCATATACTGACATTGCCACATTAGAGAGAGAGAGC CATGGTGGCTTTTAGCCTTTTACAGTGTGAATTTGAGAAATGTGAACTCACATGTCTGCCCAAGGACTTTTCTAAAGGAA AGGTTGGTTCTGTTTCATTCTGTCTCTTATTCTGCAAATATGGTTGTAAATTTCTTAGAGAATAATAGAAAGAAAAAAAA CCATTTGGGACAGTGTGGTGGATTCTCTTACTGTTAATTTTCTGTGACATTGGAGATGTTGGATGTTATGTTGACAATGT CTTTGAGTAATCCATCCCAGACATCATTGTGTTTTGTAACAAATCCTTGTCCTAGATATTTGTGCAAGCCAAGGTTGTGG CAACTTCAAGCTACACCCCCATCTTCAATTATATTGAATGCAGATGAAAGTGGGAAATTTTCCAGAAACCTTCATGGCTC AAACCTTGTATCAGGAAAGGGTGAAGAATCTGGTGCTCCTTTTCTCACTCAGGGAAGCAGTGTTGGTATAATTGGAGGGT TTTCTGTTGATGCCACCCTCAACTTCATAAGCAAACTTGTGGAGTTGAGTTCAGAAGATGGAAGAAGAACAAGTTCCAAT ATTCCTTTTGTGCTTTGTTCTGATCCTGTGTTGAACAAGGAGCTTCTTTCCTATGAAAGGAGTTGTTTTGTTGCAAGTAA AGGGGAAAGTTTGAAACCTGATTGTTATTCTCAGATTGTGCAGAGTCTTAGAAGCAAGAGGGCTTTTCTTGAGAATTCTG GGGCTGGTTGCATAGTCATGCCTTGTAATGTGTCACATTCTTGGTATGAACAAGTATCCAAGGGTTGTTCTGTCACATTT CTTCACATGGCTGAGTGTGTTGCCAAGGAGCTCAAGGAAGCAAAGTTAAAGCCACTTGAAGCTGGTAGCCCTTTGCGGAT TGGAGTGCTCGCAACAAATGCAACTCTTGCAGCAGGTTTCTATAAGGAGAAGCTTCAGAATGAAGTAAGTTCAGAGTACC AGGTTTCTAAATGTTAACAGCATATCTTATTAGTGTAGGACATGCTTAGGAGTAAGTATATGCTATAGGAAACTTCAGAA CCAAATAAGTTCTTCATGAATATGAACATAGCTTGTGTTTGGCTTCCTTTTGGAACCTTAGAATCAATTCTCATCGGGCG AAATCACTTTTGGATGATTAAATGGATGTTCAGGAATCATCTCGAAGAATTGATTCCGATAATAAATTTTGCGGAGAATT CAGAGTAGCAGCTACCTTGTTCTGTGTACACAATCAATTGTGAAAACTTTCAACTGGATTTTAAAAAATTACCCTGCAGA AATCACTTTTTTCATAAATGTACCCAAACTTTAAATATCTTCATTTTCAACTCACTTCTACCATAATTAGTTTTACCAAA ATCTATTCTGACAATATTGATCCAAACACTATTAGTGTGTGACAGCACAAGAGAACAAGGAGCACTGAGAAATGCACATT ACAGTATTGCTTGTTCAGTGCACCTTTAGAATGCATTATGTGATGCATAGCTTTATAAGCTACTTTTCAAAGTCAGTTGC CTTCTTGGTTTCTTATTAGTATCAAATAAGTGCAGCATATTCGATAGTGTTTCCACAGATTTGTAAGTATTAAATTTCGT AACTGTAACAAAATGTGAAGGCTGAAGGCAGTTCATTTTCACTTGCATATAATATAGGAAGCTACAATTTATAATGTGAA ATGTGGTTGATGGAAGTGATTGCCTGAGACTAAGTAAGGGGGAACTTCAAATATTGTCAAATGTGAGATTCCTAACTCAA TATTTTAGCAATTCGTAACTTCTAGTTTATTATCTATGTACATTGCTGGGAACTCTATGCTTATAATGAGTGTAATTTGT TTATATTGTTTGTGGTTCTTAATTTTATTTGACATGTGCTAACAGTATTTTCTCATATGCCAAAACAAAACACCAGAGTC ATGTTTTCTTTCTCATGGTTCATGAAGATCCAATTTCATATTCTGTTAGTTTCTTATTTATGAACATGGAGCAGATTGTC AAATATGTACTTCATAGGCACTAGTTATTTTGCACTTTTTCTGCAATGCTTATAGAAGAAAGACCATGTTGAAGTGTGTT GACAAGCTATACAAATTTAGATAGTTGTTAATCTTATTTACTTATCTTCAGGGATTTGAGGTTGTACTACCTGATAGAGC AACCATGGAGCATACAGTAATACCTGCAACTGAAGCTTTGGACAGAAAGGACAGGGAAGGGGCATGCAATCTATTGAGAA TTGCACTTCAAGTTCTTCTGGTGAGGGCAGTTAATACTGTTATCCTTGCTTCTGACGAGATGCGGGGTCTCTTGCCCCAT GACGATCCTCTTCTCAAGAAATGTATTGATCCGTTAGACGCCTTAGCCCGATCAACTATCAACTGGGTAAGATCCTCTGG AGATAATACATGAACAACAATAGAAAGCAACTGTTGTATTTCATTGTGTCAATATTCTTTTTATCTCATTGATATTATGC ATTTCATTTATAATACTCTTGATTTTACCAATATTGTAATCAAGCCAAAATGTATGTTTAGTATCAGAGCATGTATTCCT TCTGTGTTCGCAAATCAAGTTTATTTTACCTTAAAGAACTTAACCCTAATTTTAGTTCTAATAAGGTCATTGCTTGTGAA TGTATTATCATCTATTGAAATTTGAATAGTTCTTGATATCAGATATGGCAGGAAATAATGGAATACCATGTCAACATCTG GTCCAAGTCCAACAGTTGCTTCCCGTTTATGATTTTACTTTCTTTGGAACTTTCTTTGTGCTGAACTAATGCTATTTTCA TTACTTGGGCCATAACAGGAAGGAACATTGTCATTAATGTCTTAAGCGCTAACACATAATAGTGACATATTTGTCATGCT TTATACAAAGATATCTACTAATATCTACACGAAATGTTGAAACATTTACAAAAAAAGGGGGTCAGAATGGTAGTGAAGTA AAGTCCTTGACTCCTGCATCTTTCTCCTTAATAGAAATAACCAAGTTTTGGGGTAGCACTTCACTTGTCAAGTTTGCTAA GCGAGCTATGGTGCAGGGACAAATCTTAAATCCAATCAGCATAGATGCCACTGATTTTTCGCAGGTCATTTTTCTTGAAC ATGAACTTCACAGCATATGGTTCATTCTTGCGCAAAGAGCTAGCTTCCACTGTGTTGGTCGAGGCATTTGTAGCAGCAGC AGAAGTTTGCATTACCCTGTATTCTGCATAAGAGTATCGATCATGTTTCCCTTGTTCTGCATTGGCAAAAATTGAAGTCA GAATTAACTTACAAGTTACAC 

CDS sequence (LotjaGi3g1v0011400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGATGTTATGTTGACAATGTCTTTGAGTAATCCATCCCAGACATCATTGTGTTTTGTAACAAATCCTTGTCCTAG ATATTTGTGCAAGCCAAGGTTGTGGCAACTTCAAGCTACACCCCCATCTTCAATTATATTGAATGCAGATGAAAGTGGGA AATTTTCCAGAAACCTTCATGGCTCAAACCTTGTATCAGGAAAGGGTGAAGAATCTGGTGCTCCTTTTCTCACTCAGGGA AGCAGTGTTGGTATAATTGGAGGGTTTTCTGTTGATGCCACCCTCAACTTCATAAGCAAACTTGTGGAGTTGAGTTCAGA AGATGGAAGAAGAACAAGTTCCAATATTCCTTTTGTGCTTTGTTCTGATCCTGTGTTGAACAAGGAGCTTCTTTCCTATG AAAGGAGTTGTTTTGTTGCAAGTAAAGGGGAAAGTTTGAAACCTGATTGTTATTCTCAGATTGTGCAGAGTCTTAGAAGC AAGAGGGCTTTTCTTGAGAATTCTGGGGCTGGTTGCATAGTCATGCCTTGTAATGTGTCACATTCTTGGTATGAACAAGT ATCCAAGGGTTGTTCTGTCACATTTCTTCACATGGCTGAGTGTGTTGCCAAGGAGCTCAAGGAAGCAAAGTTAAAGCCAC TTGAAGCTGGTAGCCCTTTGCGGATTGGAGTGCTCGCAACAAATGCAACTCTTGCAGCAGGTTTCTATAAGGAGAAGCTT CAGAATGAAGGATTTGAGGTTGTACTACCTGATAGAGCAACCATGGAGCATACAGTAATACCTGCAACTGAAGCTTTGGA CAGAAAGGACAGGGAAGGGGCATGCAATCTATTGAGAATTGCACTTCAAGTTCTTCTGGTGAGGGCAGTTAATACTGTTA TCCTTGCTTCTGACGAGATGCGGGGTCTCTTGCCCCATGACGATCCTCTTCTCAAGAAATGTATTGATCCGTTAGACGCC TTAGCCCGATCAACTATCAACTGGGTAAGATCCTCTGGAGATAATACATGA 

Protein sequence (LotjaGi3g1v0011400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLDVMLTMSLSNPSQTSLCFVTNPCPRYLCKPRLWQLQATPPSSIILNADESGKFSRNLHGSNLVSGKGEESGAPFLTQG SSVGIIGGFSVDATLNFISKLVELSSEDGRRTSSNIPFVLCSDPVLNKELLSYERSCFVASKGESLKPDCYSQIVQSLRS KRAFLENSGAGCIVMPCNVSHSWYEQVSKGCSVTFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKL QNEGFEVVLPDRATMEHTVIPATEALDRKDREGACNLLRIALQVLLVRAVNTVILASDEMRGLLPHDDPLLKKCIDPLDA LARSTINWVRSSGDNT 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 9 332 324 2.8E-136
PANTHER 9 332 324 2.8E-136
Gene3D 83 323 241 6.4E-51
SUPERFAMILY 83 208 126 7.46E-17
Pfam 86 326 241 1.0E-36
Gene3D 200 317 118 6.4E-51
SUPERFAMILY 221 329 109 4.09E-17

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Nitrogen compound metabolic process The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
Molecular function Racemase and epimerase activity, acting on amino acids and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid.
Molecular function Racemase activity, acting on amino acids and derivatives Catalysis of the interconversion of the two enantiomers of a chiral amino acid or amino acid derivative.
Molecular function Amino-acid racemase activity Catalysis of the reaction: an L-amino acid = a D-amino acid.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0011400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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