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LotjaGi3g1v0011400.1

Overview

Field Value
Gene ID LotjaGi3g1v0011400
Transcript ID LotjaGi3g1v0011400.1
Lotus japonicus genome version Gifu v1.2
Description Aspartate racemase; TAIR: AT1G15410.1 aspartate-glutamate racemase family; Swiss-Prot: sp|O58403|RACD_PYRHO Aspartate racemase; TrEMBL-Plants: tr|Q2HVX3|Q2HVX3_MEDTR Asp/Glu racemase; Found in the gene: LotjaGi3g1v0011400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:1253734..1257194) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTTTTAAGCCTCTCTCTTGATTCTTGAGTAATTTAGATGAATCCAACAAAGTGAGTGAAGCTCTGGATGCAGACAAA TGAAGATAAAGTATATTATCAATAATTTAATATGGTCTCAACTCTCATATACTGACATTGCCACATTAGAGAGAGAGAGC CATGGTGGCTTTTAGCCTTTTACAGTGTGAATTTGAGAAATGTGAACTCACATGTCTGCCCAAGGACTTTTCTAAAGGAA AGGTTGGTTCTGTTTCATTCTGTCTCTTATTCTGCAAATATGGTTGTAAATTTCTTAGAGAATAATAGAAAGAAAAAAAA CCATTTGGGACAGTGTGGTGGATTCTCTTACTGTTAATTTTCTGTGACATTGGAGATGTTGGATGTTATGTTGACAATGT CTTTGAGTAATCCATCCCAGACATCATTGTGTTTTGTAACAAATCCTTGTCCTAGATATTTGTGCAAGCCAAGGTTGTGG CAACTTCAAGCTACACCCCCATCTTCAATTATATTGAATGCAGATGAAAGTGGGAAATTTTCCAGAAACCTTCATGGCTC AAACCTTGTATCAGGAAAGGGTGAAGAATCTGGTGCTCCTTTTCTCACTCAGGGAAGCAGTGTTGGTATAATTGGAGGGT TTTCTGTTGATGCCACCCTCAACTTCATAAGCAAACTTGTGGAGTTGAGTTCAGAAGATGGAAGAAGAACAAGTTCCAAT ATTCCTTTTGTGCTTTGTTCTGATCCTGTGTTGAACAAGGAGCTTCTTTCCTATGAAAGGAGTTGTTTTGTTGCAAGTAA AGGGGAAAGTTTGAAACCTGATTGTTATTCTCAGATTGTGCAGAGTCTTAGAAGCAAGAGGGCTTTTCTTGAGAATTCTG GGGCTGGTTGCATAGTCATGCCTTGTAATGTGTCACATTCTTGGTATGAACAAGTATCCAAGGGTTGTTCTGTCACATTT CTTCACATGGCTGAGTGTGTTGCCAAGGAGCTCAAGGAAGCAAAGTTAAAGCCACTTGAAGCTGGTAGCCCTTTGCGGAT TGGAGTGCTCGCAACAAATGCAACTCTTGCAGCAGGTTTCTATAAGGAGAAGCTTCAGAATGAAGTAAGTTCAGAGTACC AGGTTTCTAAATGTTAACAGCATATCTTATTAGTGTAGGACATGCTTAGGAGTAAGTATATGCTATAGGAAACTTCAGAA CCAAATAAGTTCTTCATGAATATGAACATAGCTTGTGTTTGGCTTCCTTTTGGAACCTTAGAATCAATTCTCATCGGGCG AAATCACTTTTGGATGATTAAATGGATGTTCAGGAATCATCTCGAAGAATTGATTCCGATAATAAATTTTGCGGAGAATT CAGAGTAGCAGCTACCTTGTTCTGTGTACACAATCAATTGTGAAAACTTTCAACTGGATTTTAAAAAATTACCCTGCAGA AATCACTTTTTTCATAAATGTACCCAAACTTTAAATATCTTCATTTTCAACTCACTTCTACCATAATTAGTTTTACCAAA ATCTATTCTGACAATATTGATCCAAACACTATTAGTGTGTGACAGCACAAGAGAACAAGGAGCACTGAGAAATGCACATT ACAGTATTGCTTGTTCAGTGCACCTTTAGAATGCATTATGTGATGCATAGCTTTATAAGCTACTTTTCAAAGTCAGTTGC CTTCTTGGTTTCTTATTAGTATCAAATAAGTGCAGCATATTCGATAGTGTTTCCACAGATTTGTAAGTATTAAATTTCGT AACTGTAACAAAATGTGAAGGCTGAAGGCAGTTCATTTTCACTTGCATATAATATAGGAAGCTACAATTTATAATGTGAA ATGTGGTTGATGGAAGTGATTGCCTGAGACTAAGTAAGGGGGAACTTCAAATATTGTCAAATGTGAGATTCCTAACTCAA TATTTTAGCAATTCGTAACTTCTAGTTTATTATCTATGTACATTGCTGGGAACTCTATGCTTATAATGAGTGTAATTTGT TTATATTGTTTGTGGTTCTTAATTTTATTTGACATGTGCTAACAGTATTTTCTCATATGCCAAAACAAAACACCAGAGTC ATGTTTTCTTTCTCATGGTTCATGAAGATCCAATTTCATATTCTGTTAGTTTCTTATTTATGAACATGGAGCAGATTGTC AAATATGTACTTCATAGGCACTAGTTATTTTGCACTTTTTCTGCAATGCTTATAGAAGAAAGACCATGTTGAAGTGTGTT GACAAGCTATACAAATTTAGATAGTTGTTAATCTTATTTACTTATCTTCAGGGATTTGAGGTTGTACTACCTGATAGAGC AACCATGGAGCATACAGTAATACCTGCAACTGAAGCTTTGGACAGAAAGGACAGGGAAGGGGCATGCAATCTATTGAGAA TTGCACTTCAAGTTCTTCTGGTGAGGGCAGTTAATACTGTTATCCTTGCTTCTGACGAGATGCGGGGTCTCTTGCCCCAT GACGATCCTCTTCTCAAGAAATGTATTGATCCGTTAGACGCCTTAGCCCGATCAACTATCAACTGGGTAAGATCCTCTGG AGATAATACATGAACAACAATAGAAAGCAACTGTTGTATTTCATTGTGTCAATATTCTTTTTATCTCATTGATATTATGC ATTTCATTTATAATACTCTTGATTTTACCAATATTGTAATCAAGCCAAAATGTATGTTTAGTATCAGAGCATGTATTCCT TCTGTGTTCGCAAATCAAGTTTATTTTACCTTAAAGAACTTAACCCTAATTTTAGTTCTAATAAGGTCATTGCTTGTGAA TGTATTATCATCTATTGAAATTTGAATAGTTCTTGATATCAGATATGGCAGGAAATAATGGAATACCATGTCAACATCTG GTCCAAGTCCAACAGTTGCTTCCCGTTTATGATTTTACTTTCTTTGGAACTTTCTTTGTGCTGAACTAATGCTATTTTCA TTACTTGGGCCATAACAGGAAGGAACATTGTCATTAATGTCTTAAGCGCTAACACATAATAGTGACATATTTGTCATGCT TTATACAAAGATATCTACTAATATCTACACGAAATGTTGAAACATTTACAAAAAAAGGGGGTCAGAATGGTAGTGAAGTA AAGTCCTTGACTCCTGCATCTTTCTCCTTAATAGAAATAACCAAGTTTTGGGGTAGCACTTCACTTGTCAAGTTTGCTAA GCGAGCTATGGTGCAGGGACAAATCTTAAATCCAATCAGCATAGATGCCACTGATTTTTCGCAGGTCATTTTTCTTGAAC ATGAACTTCACAGCATATGGTTCATTCTTGCGCAAAGAGCTAGCTTCCACTGTGTTGGTCGAGGCATTTGTAGCAGCAGC AGAAGTTTGCATTACCCTGTATTCTGCATAAGAGTATCGATCATGTTTCCCTTGTTCTGCATTGGCAAAAATTGAAGTCA GAATTAACTTACAAGTTACAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0011400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGATGTTATGTTGACAATGTCTTTGAGTAATCCATCCCAGACATCATTGTGTTTTGTAACAAATCCTTGTCCTAG ATATTTGTGCAAGCCAAGGTTGTGGCAACTTCAAGCTACACCCCCATCTTCAATTATATTGAATGCAGATGAAAGTGGGA AATTTTCCAGAAACCTTCATGGCTCAAACCTTGTATCAGGAAAGGGTGAAGAATCTGGTGCTCCTTTTCTCACTCAGGGA AGCAGTGTTGGTATAATTGGAGGGTTTTCTGTTGATGCCACCCTCAACTTCATAAGCAAACTTGTGGAGTTGAGTTCAGA AGATGGAAGAAGAACAAGTTCCAATATTCCTTTTGTGCTTTGTTCTGATCCTGTGTTGAACAAGGAGCTTCTTTCCTATG AAAGGAGTTGTTTTGTTGCAAGTAAAGGGGAAAGTTTGAAACCTGATTGTTATTCTCAGATTGTGCAGAGTCTTAGAAGC AAGAGGGCTTTTCTTGAGAATTCTGGGGCTGGTTGCATAGTCATGCCTTGTAATGTGTCACATTCTTGGTATGAACAAGT ATCCAAGGGTTGTTCTGTCACATTTCTTCACATGGCTGAGTGTGTTGCCAAGGAGCTCAAGGAAGCAAAGTTAAAGCCAC TTGAAGCTGGTAGCCCTTTGCGGATTGGAGTGCTCGCAACAAATGCAACTCTTGCAGCAGGTTTCTATAAGGAGAAGCTT CAGAATGAAGGATTTGAGGTTGTACTACCTGATAGAGCAACCATGGAGCATACAGTAATACCTGCAACTGAAGCTTTGGA CAGAAAGGACAGGGAAGGGGCATGCAATCTATTGAGAATTGCACTTCAAGTTCTTCTGGTGAGGGCAGTTAATACTGTTA TCCTTGCTTCTGACGAGATGCGGGGTCTCTTGCCCCATGACGATCCTCTTCTCAAGAAATGTATTGATCCGTTAGACGCC TTAGCCCGATCAACTATCAACTGGGTAAGATCCTCTGGAGATAATACATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0011400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLDVMLTMSLSNPSQTSLCFVTNPCPRYLCKPRLWQLQATPPSSIILNADESGKFSRNLHGSNLVSGKGEESGAPFLTQG SSVGIIGGFSVDATLNFISKLVELSSEDGRRTSSNIPFVLCSDPVLNKELLSYERSCFVASKGESLKPDCYSQIVQSLRS KRAFLENSGAGCIVMPCNVSHSWYEQVSKGCSVTFLHMAECVAKELKEAKLKPLEAGSPLRIGVLATNATLAAGFYKEKL QNEGFEVVLPDRATMEHTVIPATEALDRKDREGACNLLRIALQVLLVRAVNTVILASDEMRGLLPHDDPLLKKCIDPLDA LARSTINWVRSSGDNT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21198
9 332 324 2.8E-136 –
PANTHER
PTHR21198:SF7
9 332 324 2.8E-136
IPR004380
Gene3D
G3DSA:3.40.50.1860
83 323 241 6.4E-51 –
SUPERFAMILY
SSF53681
83 208 126 7.46E-17
IPR001920
Pfam
PF01177
86 326 241 1.0E-36
IPR015942
Gene3D
G3DSA:3.40.50.1860
200 317 118 6.4E-51 –
SUPERFAMILY
SSF53681
221 329 109 4.09E-17
IPR001920

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006807
Biological process Nitrogen compound metabolic process The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
Subterm of
GO:0016855
Molecular function Racemase and epimerase activity, acting on amino acids and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid.
Subterm of
GO:0036361
Molecular function Racemase activity, acting on amino acids and derivatives Catalysis of the interconversion of the two enantiomers of a chiral amino acid or amino acid derivative.
Subterm of
GO:0047661
Molecular function Amino-acid racemase activity Catalysis of the reaction: an L-amino acid = a D-amino acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0011400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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