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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0011800 |
| Transcript ID | LotjaGi3g1v0011800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serpin-like protein; TAIR: AT1G47710.1 Serine protease inhibitor (SERPIN) family protein; Swiss-Prot: sp|Q9S7T8|SPZX_ARATH Serpin-ZX; TrEMBL-Plants: tr|I3S0S8|I3S0S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0011800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1289999..1292262) extracted from Lotus japonicus Gifu genome v1.2.
GGATTTTTCTTGTGGTAAAAATATGTTCTGTTCTTGAGGGTGATAGGATGTTGTTAATATGCATCCTGTCCTTTCTCAAA TCAAATTGTGAATCAAATTGTGTCAGTTTCAAGTGTCTGAGTTGAAGAAAAAAATATGAGTTTGGGATGATTATAATGCA ATTTTCTCCATTTAATTTGAATCATTGCTTTCTTACTGTTTAGGATCGGATTTTGAACCATTAATGGACCTCAGAAAATC AATGAGGTGCCAAAGAGATGATGTTGCCCTCAGTATCACAAAGCATTTATTCTCAAAAGAAGAATATCAGGAGAAGAACA TGGTGTTTTCACCCTTTTCTCTCCATATTGTTCTTAGCGTCATGGCTGCTGGTTCACAAGGCCACACACTCCACGAGCTT CTTTCCTTCCTCCGATCTGACTCCACCGACCATCTCAACACTTTGTTCTCTCAGCTCGTCTCTGCTGTCGCTACTCCTTC ACATTGCCTGTCTTATGTCAATGGAATATGGGCGGATAAATCGGTTTCCCTTTCCCATACTTTTAAACAACTTGTGGCAA CTCATTACAAAGCCACTCTCCATTCAACTGATTTTACCAAGGTAATTTTTTTAATTCGATCCAAAAAATCCTTCTGTTAA AATGTTTATGAAAAAAATATAATTAATTTTCATGTGTGGTTTGAAAGGCTGATCAAGTGTGCCATGAAGTGAATTCGTGG GTTGAAAGGGAGACCAGTGGCCTTATCACAGAGCTTTGTCCCTCCAAGGTAGTAGCCAACTTAACCAGCCTTGTCTATGC AAGTGCACTCTGCTTCAAGGGGGTGTGGAAACACAAGTTTGATGCTTTAAGTACATACCATGCTGATTTTCACCTCCTTA ATGGTACCTCAATCAAGCTTCCCTTCATGACAAGCAAGAAGAAGACGCAGTATATTAGAGCTTTTGATGGTTTTAAAATC CTCCGTCTTCCTTATAAGCAAGATAGCGATAAAAAGCGCCGATTCTCCATGTGCATTTTTCTTCCGGATGCAAAAGATGG ACTTTCAGCTTTAATTGAAAAGTTGGCATCAGAATCTGGTTTTTTGAAAGGCAAGCTTCCTCGGCGAAAAGTGCAAGTCA TTCGTTTTGGAATTCCAAAATTCAAGATTTCTTTTACACTTGAAGCTTCTAATGTGTTGAAGGAGCTTGGAGTAGTTTCT CCTTTCTCTCAATGGGATGCGGATTTTACAAAAATGGTGGACTCTCCTTCAAATGGAGTATATGTTGAAAGCATGTTTCA CACAACTTCCATTGATGTAAATGAAGAAGGCACTGAAGCTACGGCATTGGAGTTAATGTTCGCGAGACTGAAGTGTAGGA CCCGTAATCCGAGTATAAATTTTGTAGCTAACCACCCTTTCCTCTTCATGATCAGAGAAGATTTGACCGGAACAATCCTT TTTATTGGGAAGGTGCTTCATCCCGACGGAGAAGCCTCATCACTAAAAGCCACGTTGGAGATGGTTAGTAATTTCAATAT CTGATTGTATTTTGTGACTAGAATTGTTTTGTTGTCCGATTGAATATTGATGCCAACCATATGGGAAAGTTACACTTCTT TTTCACTTGGGGTGTGCATTTTATAATGGACTAGGTCTTTCGTTGGCATAGTATTTGTTACTTGAATTTTCAGCAATTCA GGCTTATGATGTGTGGAGTTTGAGAATCAATAGAACACAATCATGTTTGAAGTTTCCGCTAAAAGAACTCAATAATATGT CTTACATTACATAATTCCTTCTTTAAGTGAGAATGAAAATAAAGATAGTTGACATAAAATTTTAGTTATCTACACCTGTT GTGCTGTTGCATTATTGTATGATCGATATATTACAAGTGTAATTTCATTTTGCTACGTTTTAACCATTTGACTTACTTTT TTCCATAAAATATAAATGTTTTAGGAGGAGTTCTTCAGAAGTGCCAAAAAAAGGAGGAGTTTTTTTAAAGAACAGTGGGG AATAATCTACTGATTTTGAACCGGAGGGAATCGGGAGGAGGAAGATAAGGGTGATGACGGCAATGATGATAAGCCCGATA TTCCACCAAAGAGGAAGAGGTCCAGTAGAAGTGGCTCCATGAAATTGTTTCACGCTCTCATTTATGATTATGTTGCAACA TTATTAGGTTTACTAGTTTTGTTTTGTTGGTGCATATTGCATAGTCAATATTAGTGGGTTAAACATGTGATAGAACATGG CTTCAAACGAAGTTGTAGTGATCC
CDS sequence (LotjaGi3g1v0011800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCTCAGAAAATCAATGAGGTGCCAAAGAGATGATGTTGCCCTCAGTATCACAAAGCATTTATTCTCAAAAGAAGA ATATCAGGAGAAGAACATGGTGTTTTCACCCTTTTCTCTCCATATTGTTCTTAGCGTCATGGCTGCTGGTTCACAAGGCC ACACACTCCACGAGCTTCTTTCCTTCCTCCGATCTGACTCCACCGACCATCTCAACACTTTGTTCTCTCAGCTCGTCTCT GCTGTCGCTACTCCTTCACATTGCCTGTCTTATGTCAATGGAATATGGGCGGATAAATCGGTTTCCCTTTCCCATACTTT TAAACAACTTGTGGCAACTCATTACAAAGCCACTCTCCATTCAACTGATTTTACCAAGGCTGATCAAGTGTGCCATGAAG TGAATTCGTGGGTTGAAAGGGAGACCAGTGGCCTTATCACAGAGCTTTGTCCCTCCAAGGTAGTAGCCAACTTAACCAGC CTTGTCTATGCAAGTGCACTCTGCTTCAAGGGGGTGTGGAAACACAAGTTTGATGCTTTAAGTACATACCATGCTGATTT TCACCTCCTTAATGGTACCTCAATCAAGCTTCCCTTCATGACAAGCAAGAAGAAGACGCAGTATATTAGAGCTTTTGATG GTTTTAAAATCCTCCGTCTTCCTTATAAGCAAGATAGCGATAAAAAGCGCCGATTCTCCATGTGCATTTTTCTTCCGGAT GCAAAAGATGGACTTTCAGCTTTAATTGAAAAGTTGGCATCAGAATCTGGTTTTTTGAAAGGCAAGCTTCCTCGGCGAAA AGTGCAAGTCATTCGTTTTGGAATTCCAAAATTCAAGATTTCTTTTACACTTGAAGCTTCTAATGTGTTGAAGGAGCTTG GAGTAGTTTCTCCTTTCTCTCAATGGGATGCGGATTTTACAAAAATGGTGGACTCTCCTTCAAATGGAGTATATGTTGAA AGCATGTTTCACACAACTTCCATTGATGTAAATGAAGAAGGCACTGAAGCTACGGCATTGGAGTTAATGTTCGCGAGACT GAAGTGTAGGACCCGTAATCCGAGTATAAATTTTGTAGCTAACCACCCTTTCCTCTTCATGATCAGAGAAGATTTGACCG GAACAATCCTTTTTATTGGGAAGGTGCTTCATCCCGACGGAGAAGCCTCATCACTAAAAGCCACGTTGGAGATGGAGGAG TTCTTCAGAAGTGCCAAAAAAAGGAGGAGTTTTTTTAAAGAACAGTGGGGAATAATCTACTGA
Protein sequence (LotjaGi3g1v0011800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLRKSMRCQRDDVALSITKHLFSKEEYQEKNMVFSPFSLHIVLSVMAAGSQGHTLHELLSFLRSDSTDHLNTLFSQLVS AVATPSHCLSYVNGIWADKSVSLSHTFKQLVATHYKATLHSTDFTKADQVCHEVNSWVERETSGLITELCPSKVVANLTS LVYASALCFKGVWKHKFDALSTYHADFHLLNGTSIKLPFMTSKKKTQYIRAFDGFKILRLPYKQDSDKKRRFSMCIFLPD AKDGLSALIEKLASESGFLKGKLPRRKVQVIRFGIPKFKISFTLEASNVLKELGVVSPFSQWDADFTKMVDSPSNGVYVE SMFHTTSIDVNEEGTEATALELMFARLKCRTRNPSINFVANHPFLFMIREDLTGTILFIGKVLHPDGEASSLKATLEMEE FFRSAKKRRSFFKEQWGIIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 386 | 375 | 4.2E-119 | – | |
| PANTHER | 12 | 386 | 375 | 4.2E-119 | ||
| Pfam | 13 | 385 | 373 | 1.7E-93 | ||
| SUPERFAMILY | 13 | 385 | 373 | 2.62E-100 | ||
| SMART | 16 | 385 | 370 | 6.3E-82 | ||
| Gene3D | 30 | 332 | 303 | 3.4E-107 | ||
| Gene3D | 173 | 380 | 208 | 3.4E-107 | ||
| ProSitePatterns | 358 | 368 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
Expression pattern of LotjaGi3g1v0011800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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