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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0013600 |
| Transcript ID | LotjaGi3g1v0013600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT1G80370.1 Cyclin A2;4; Swiss-Prot: sp|Q9C968|CCA24_ARATH Cyclin-A2-4; TrEMBL-Plants: tr|I3SBK2|I3SBK2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0013600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1471733..1478108) extracted from Lotus japonicus Gifu genome v1.2.
CTCACACACTCAATGAAGTGTCCCTTTACTTTATTGAGTCAACATCAAAAATCGAACCACCAAGTCTTTGGTCAAATTAA TATTGTTTTTTCTTTCAAAACAACACATTCTTTATTCATTTCTTGTTTCTTTCTTTCTCTCTTTCCTTTTCACTGAGATT TTAAACCAAACCCCAATCCCGCTTTCCCTATTCCTTCACCATAGCTGTACTCAACCAACACTAGGGAACTGTCTCTTTCC TTCTTTCTCAGTGAGACCTTTCTTCACTCTTCAATGGAAGTTGCTGAGCTCGTTTCAACTTAGACCCCAGGTCACTCTTC AGCTCCTTCAAATGCCACATTCTTCAGCTCATTTTTTTTGTGGGTTTTGTTTGTGGGGGCAAATGCTTATCTGGGTCAGT GAGAAAATGTCTTAAAATGGGAAAAAAATGGAAAAGATTGAATCTTGGGTGTACATTGTCAAATGGGTATCTTTGATAAG ATTGAAAAGAACAGGGCATTTTGTTTTTTTTTCCTTTTCCATTTTTCACGTTGCCGATGGAGCCTGCATATGTTGTTGTT GTCTTGTGTTTCTTGTTTTTTTTGGCAATGTGTGTTGTTTACGCTTTTGAAGTTGACTGGTTATTCAGCAATCTTGTAAA TCTTCACGTTTTTGGAGTGTAGGTTTGCATGGGCAAAGAAATGCTAGGGGTTCAAAAAATTAATCTGAACTCTATAGTGT GTGTTGCTGAAATTAGCTTCTTTGTTTTCTTTCCTTTCTGCTTTGGTTCTTTTACTTTACTGTTTGTAACCCTCATCTTA TATCTTGCGTACAAAAATGGAAGATTTAAGAGAAGAGATCTTTCTTGACTAATCTGATATGCTCTGCTGTAAAATTTAAA ACGTGATCTATGAATGCTCTCTTTGTGCCTTTGTCACTCAATTGGACCTTTACTCTTAGTACTATTTAAGGTAAATTGAA TTCTCAATGTCAATTTCAAACTTATTTGTAGCATGTTTAAGGTGTTTCGATGTCGATTGTATGCTTCAAATTGAATAACA TAGTATCATCAAATCCAAGATTTGCTGTGTTCTTTGTCCATTTTAAAACATGGATCAAGAGGCTGCTGAATGCATCAAGT CAAGTGTCAAGTGTGTTAGGTTGCTGATCAATGGAAAAAATGTTGTCAAGTGTGTTAGGTTGCTGATCTATGGAAAAAAT GTTGTTAAGTGTCATTTACCTTAAAAGTCCTGACTTGGATTTTTTGATGTATTTGGTTTCTTGATATTCTATCTGTGTTT ACTGTTTTCTAATGTAGGCTGCTTCTGTGTATCCCTTTTTCTTTCCTGGCTCATGATTGGGTCTTCTTGTTGCAGGATTC ACAAGTCAAGATTTAGAGTCCAGCTCTTCTGAATCTTGAAGAAATGAAGAAAGATAATAGTGTCGCTTTGAAAGATGGTG AGGTTCCTGCTCGATGGACTCGTGCTCGAGCTGCTGCTTTTCGTGCATCTGGACAGTTGCCTCCTCTGAAGGGGGTACCA CAAGGAATTGAAAAGCAGCCCCTAGGAGCCAACCTAAAAAGAGCGGTTTCTGATAATACATGTCTTCCGCGTAAGAAGAG GGCTGTTCTTCAGGATGTCTCTAACACTTGCTCTGAAAGTTCATACAGGAGCTGCTTCAATGCAACTAAAAATCAGGTTG CTATGCATCCAATTGGCTGTGAACAATCACCAGCTATTTATAGCAAGAAAACATTTGAACCTATCTTATGATTGGTCTTG AAACTTATTGGTGGATTCATATCTCATCAGTTGAAATGCACTCTCTTCGTCTTCCCTTACTTATGACGCTAACATTTCTT CTACAATTTTTGTGTCTTCCAGGCTAAGAAAAGCAAGATTGCTAAGCCGGCTCAACTCAATGTTCCCAAAGTGGTACCAT GTGTTGGTGGAGGGCTACCACGACATCAAGTTGACTCAAAAGCAGAGAGTTTGCCGCAAATGGGGCTTCGATCAGAAGAT ACCATGTGTTCATTTAATTTCGAAGACAATGCTTTTCTACGGCCGAGTTCCAAACAATGTGGCACAGATGATAATATGTT TGACAGCCAGACATCTGGAATATCCTCTTATCCGTTGATATCTCAAAAGAAAGGTTTTCTTCAAATTTTCTCTCCTGCAT GTGATATACCTTATCGTAGGACATGATCTGTGCATTACTTAAACACATCATTTTACAATATTAATGTTTTTGTGCTATAT CTTTAAGGTTGCTACATGAGTGATTTTGCTTAACTTGTCTGTTTGTAAATGACTACATGATCTTCTAAAGTCTGAGGAGT CTAAAGCAAAATTGAAATGGCGATCTCATTGTAAATAATGCACAATTATAATAGATACGCGGCTTCGTGTTGTGCCCACG CTCTGCAAGTTGAAATGTTTTTTTATTGAAATATACACTTTTACAATAATTATAATTCTGTCAGTTGTTATTGCTAACAC AGCTGATTGTATGTTCGAAGTAATCAAGCTTGCTTGTATAGAGAAATTTGAAGATCATATGCTTCCTTGAGTTCCTTCTT AATATTATATACAGTTGTTGCTTCAAACCTTCTACAGTGGCAAAATTTATAATTATGTGTTAAAATACATTTTACTGGGT TAATGAATTTGTTTATGGCTTCATAAACGAAACCACTTTCTAATTATTTGATGTTAATATTCACTTGCTTCTTTTTGGTC TCAGCTTCTCAAACTGTTGCAGCCAAGAAAAGTAGCCTTGCTGAACTCCAGAATGTGTCACAGGATCCAGATTTCACTGA TATAGATGCTGATTCTGAGGATCCTCAACTGTGCGGCCTCTATGCCACTGATATCTACAACAACTTCCGCGTTGCTGAGG TTTGTGTTGTATTGTTGTAAAGGCTCTGCCATTAGTATACATCAGTTATGTTATGCCCGGTACAATCTTAGGGTTCATTT GGCATGCCATGTTATTAAGCATAATAAAATAAGCTTATTGTCTATAATAATATAACTTTGCGTTGAAAGTTACAAGAGTA TATTCATATTTACTCTTCCTGCCAACTTTTAAACTCGTTCCATATACCCAATAGTAGTACACTAGTATGTGGAAAGACAA AAAGGTATTTTTCTTATTGGTGGCTCTTTATATCAACCCATTACTTTGATGAAACCTGATAATTAAACAAGATTTAAGAT AACGCAGCTTGTAAAAAAAAATTCAGCTTGATGATTTCTGTGGTTTCATTTCACTGCTATCCCTTTACTGTCAATGAATT TTCTAAACTGAAGATTGTTCATGTCATGTAATCAATAACTACTACTGTATTAGCATAAAATGCTGCACTGGCAAAAAATA ATCTGTCTGAATTTTGTAGCACATAGTTATTAACTATAATATACACAGTGATTTGTAAAGCATGTACTTTATCAATGTAT TGTCTAGATACTCGGTTTCTAACTGTTTGAGAAAGGTAGTGCAGAATGTTCATAACCTTTCTATCATCTGTTTTCTTCAA TTTTGCCTGTTATCATAAGTTCACCAAATATTTTATTTTCCAGCTGTCAAGAAGGCCTAGCTTCATGGAAACAGTACAGC GAGATATCACTCAAAGCATGCGTGCAATACTGGTTGATTGGCTTGTAGAGGTTTGCATTATTTAACTTTCTAATATGTTG ATTACAAGTTCAGACTATCAGGTGTTTGCTGAAAAACGTGAACTCAATTGGGCTCACGTTTCATAGTTGATTCACTAATG AGATTGCTCTTAATGTGTAGGAGATGATTTGTAGTTGCACTTGTACTGTAATTTAGATATGTATATCAAGTTTGAGAAAG TGGGCATGCTTCTTTTAATTCCCTTGTGTGTTCAACTTCATTTTCAGGTTTCTGAAGAATACAAATTGGGAGCAGACACT CTTTACCTCACTGTATACCTCATTGATTGGTTTCTCTCCAAAAATTACATTGAAAGACCAAGACTTCAGCTGCTCGGAAT TACCTGCATGCTAATTGCGTCGTAAGTCACAAATTCATGAAAGTTGGCCTCTTACTCCTCATATGTATTCATCAACAGGG AATATGCAAAGATGTGTATTATATATTCTGATGCAGTTGTGTGGTACCAAACAATTCCTTAATGCTTGTGTTGAGAGGAG GACAATGCACTATATCCTTGTTTCCATGTCATTGAATGATCATTCAAGAAAGAGCTTTTCTTTGTTTACAAAGTGATTAG CCTTTGTTTGAATGCCGCATCCCATGGATGGATGTAACTTAGTTTTTATACATTTGCTTCTTCCCTGTGCTAGTTGGCAT CAACTGTAATCACTAAGCAAATGTTTCAACTTAATATTGTTCAGATTATTATAACTCTTTGGCATCTGCATTTAAAAATG TTTGTCTTCTTTTCTGTGATTGAAGGAAATATGAAGAAATTAATGCCCCACGTATTGAAGAATTCTGCTTCATCACGGAC AACACATACACAAAAGAGGAGGTATACCACATTACTTTTTTCACAATAAATGTTAATACATAATACATTAGTTCAGCAGG GTTTTGTTGTGGGATTTGAAAATGTTATTTATTTTAATATGCTGCTCTTTATTATTGGAGTATGAGTTTTGGAGTTTCTG TTAGAATTTTTGGAGCAATGTACTGATAAGTAATGTGAGTGGCAGGTACTAAAAATGGAGACTGAAGTGTTGAAGTCCTC TGCATATCAACTGTTTGCTCCCACAACAAAAACTTTCCTCAGGTACTTGTTGACATTTTTATCATTTAAGTAGTCTTTTC AGAGTTAAGGGCTATTTGAAGATCCTCATGCTTTCAACACATTCTTGGTTTCTTAGGAGGTTTCTTCGAGCTGCACAAGC TTCTTCCAAGGTGAAAATATTGATATGGGGCAATCCTGCTTGGTCCTGAACAGGCCAAATTGTTTCATTTTTCAGTATCA CTACTAATCACTTTCCTAATGAAAAACTTGCAGAACCCTAGCTTGGAACTGGAGTACTTAGCCAATTACCTAGCTGAACT TACATTGATGAACTATGGTTTCTTAAATTTCCTTCCGTCTATGATTGCCGCATCCGCCGTGTTTCTTGCGAGATGGACAT TAGATCAGTCAAGCCACCCCTGGGTTTGTGTTTAACTTTCACGCTTTCCTTTCATGTGAAGTTACATCACGGAAACATGA CCTTCATTGTTATTATTATTTGCAGAATCCAACTCTTCAACACTATGCCTCTTACAAACCATCAGATATGAAAACCACAG TTCTTGCATTACAGGATCTACAGCTGAATATTGATGGCTGCCCTTTAACTGCAATCCGCACAAAGTACACTCAAGAGAAG GTATGACACAGAGAGATAGGGGAAAAAAACTAAATAGGTGTTTGGTTCTGTGGTTGGTAGTCCCATAATCATTTCTGTGA AAAAGCTATGAAGTGGAGCTTTTCAGTTACTGTGTTTTGGATTATATGCCTAACACAAATCCGAACATCCTATACCTTTC ATGAGAATCAATTCTAAGACTCATAAGCTACTACTCACTAAAGTTTCTCCCCAGAATCAATTGTAGAAAGGGTTTCCAAA CAATGCAATAATATTTCCAATTCTTATTTTTGTATTGAGTCAACCCATTTACACTTGCATGATGTTCAAATTTTTGTTTC AGTTCAAAGGTGTAGCAGCTTTGACTTCACCAAAACTGCTTGAAACTCTGTTCTGAAGATGTAGGTGGTTGACAAACGAA TGCAAGGGACCCCTAACTGTAACTGATGATATGTACTACACAAGAGAAGTTCCTGGCTTTTATTCAAAACATGTCTCATC TAATCATCACTCCCAACTATTGTTCATTTGTCCATGCTATTCTTTAATATCTTCTGTATATACATTTGATGGTCCTTCTG ATTGGGATTCTTGTCGAGTTTTCTGAGATGGATTGAACACCAGGAACTTGATAAGTATCGGTGGTTGTTGACAGAGTGTA ACAGTAACTTCTGACGCCTTAGACTGATTGAATCCCCTTCTTGGGGAAGTTCTATTGACGTCGGTGCATGTAATCAACTC ATGAAATTTGTCATTTATCTTGTTTTTGCAAAATGCTGGGTTTTTAGATCCCAAGTTGATACATTTCAAACCAAGGAAAA CAAATTCTATCAGCATGTCTGGATTTGTGGGGGCACACAATCTAAAGCACGGCAAGTGATGCTACACTTTTAGCTTGGTA CCATAAGTGATTATAGGACTTCTAATTGTAGAACTAAAGGTGCTATAAAAAAAGTAACTGCAAATTCCTTGGAAAACGTC TTTGTTTGAAATGGATTAACGATTCTTATTTCTTGTGCGTGTGTGATATGCATATT
CDS sequence (LotjaGi3g1v0013600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAAGATAATAGTGTCGCTTTGAAAGATGGTGAGGTTCCTGCTCGATGGACTCGTGCTCGAGCTGCTGCTTTTCG TGCATCTGGACAGTTGCCTCCTCTGAAGGGGGTACCACAAGGAATTGAAAAGCAGCCCCTAGGAGCCAACCTAAAAAGAG CGGTTTCTGATAATACATGTCTTCCGCGTAAGAAGAGGGCTGTTCTTCAGGATGTCTCTAACACTTGCTCTGAAAGTTCA TACAGGAGCTGCTTCAATGCAACTAAAAATCAGGCTAAGAAAAGCAAGATTGCTAAGCCGGCTCAACTCAATGTTCCCAA AGTGGTACCATGTGTTGGTGGAGGGCTACCACGACATCAAGTTGACTCAAAAGCAGAGAGTTTGCCGCAAATGGGGCTTC GATCAGAAGATACCATGTGTTCATTTAATTTCGAAGACAATGCTTTTCTACGGCCGAGTTCCAAACAATGTGGCACAGAT GATAATATGTTTGACAGCCAGACATCTGGAATATCCTCTTATCCGTTGATATCTCAAAAGAAAGCTTCTCAAACTGTTGC AGCCAAGAAAAGTAGCCTTGCTGAACTCCAGAATGTGTCACAGGATCCAGATTTCACTGATATAGATGCTGATTCTGAGG ATCCTCAACTGTGCGGCCTCTATGCCACTGATATCTACAACAACTTCCGCGTTGCTGAGCTGTCAAGAAGGCCTAGCTTC ATGGAAACAGTACAGCGAGATATCACTCAAAGCATGCGTGCAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATA CAAATTGGGAGCAGACACTCTTTACCTCACTGTATACCTCATTGATTGGTTTCTCTCCAAAAATTACATTGAAAGACCAA GACTTCAGCTGCTCGGAATTACCTGCATGCTAATTGCGTCGAAATATGAAGAAATTAATGCCCCACGTATTGAAGAATTC TGCTTCATCACGGACAACACATACACAAAAGAGGAGGTACTAAAAATGGAGACTGAAGTGTTGAAGTCCTCTGCATATCA ACTGTTTGCTCCCACAACAAAAACTTTCCTCAGGAGGTTTCTTCGAGCTGCACAAGCTTCTTCCAAGAACCCTAGCTTGG AACTGGAGTACTTAGCCAATTACCTAGCTGAACTTACATTGATGAACTATGGTTTCTTAAATTTCCTTCCGTCTATGATT GCCGCATCCGCCGTGTTTCTTGCGAGATGGACATTAGATCAGTCAAGCCACCCCTGGAATCCAACTCTTCAACACTATGC CTCTTACAAACCATCAGATATGAAAACCACAGTTCTTGCATTACAGGATCTACAGCTGAATATTGATGGCTGCCCTTTAA CTGCAATCCGCACAAAGTACACTCAAGAGAAGTTCAAAGGTGTAGCAGCTTTGACTTCACCAAAACTGCTTGAAACTCTG TTCTGA
Protein sequence (LotjaGi3g1v0013600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKDNSVALKDGEVPARWTRARAAAFRASGQLPPLKGVPQGIEKQPLGANLKRAVSDNTCLPRKKRAVLQDVSNTCSESS YRSCFNATKNQAKKSKIAKPAQLNVPKVVPCVGGGLPRHQVDSKAESLPQMGLRSEDTMCSFNFEDNAFLRPSSKQCGTD DNMFDSQTSGISSYPLISQKKASQTVAAKKSSLAELQNVSQDPDFTDIDADSEDPQLCGLYATDIYNNFRVAELSRRPSF METVQRDITQSMRAILVDWLVEVSEEYKLGADTLYLTVYLIDWFLSKNYIERPRLQLLGITCMLIASKYEEINAPRIEEF CFITDNTYTKEEVLKMETEVLKSSAYQLFAPTTKTFLRRFLRAAQASSKNPSLELEYLANYLAELTLMNYGFLNFLPSMI AASAVFLARWTLDQSSHPWNPTLQHYASYKPSDMKTTVLALQDLQLNIDGCPLTAIRTKYTQEKFKGVAALTSPKLLETL F
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 386 | 386 | - | – | |
| PIRSF | 39 | 480 | 442 | 2.0E-119 | – | |
| PANTHER | 50 | 481 | 432 | 1.2E-158 | ||
| PANTHER | 50 | 481 | 432 | 1.2E-158 | – | |
| SUPERFAMILY | 213 | 343 | 131 | 1.21E-44 | ||
| Pfam | 224 | 343 | 120 | 7.0E-38 | ||
| Gene3D | 227 | 469 | 243 | 1.1E-90 | – | |
| Gene3D | 238 | 349 | 112 | 1.1E-90 | – | |
| CDD | 252 | 341 | 90 | 6.30358E-22 | ||
| SMART | 258 | 342 | 85 | 4.4E-23 | ||
| SUPERFAMILY | 351 | 476 | 126 | 2.21E-37 | ||
| Pfam | 351 | 473 | 123 | 9.5E-33 | ||
| CDD | 351 | 429 | 79 | 3.10519E-16 | ||
| SMART | 351 | 474 | 124 | 8.5E-40 | ||
| SMART | 355 | 443 | 89 | 7.0E-22 | ||
| Phobius | 387 | 408 | 22 | - | – | |
| Phobius | 409 | 481 | 73 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0013600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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