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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0016100 |
| Transcript ID | LotjaGi3g1v0016100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2; TAIR: AT5G11460.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|K7M3V3|K7M3V3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0016100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1689342..1692645) extracted from Lotus japonicus Gifu genome v1.2.
TTGCAGGCTCAATGATGAGAGAGAGATGAGAAAAGACAGAAAGAGAGAGAGAAACAGAAGTAGTACATAGGAAGACTCAG TGGCTCACTGTTTCTCTGACTTTGATGCATGCAAGTGGAGTGGAGCATGGTGAAAAATAATCTCTGATGTTATAGGTAAA CTCTTGCTGATGTTTCATCACTGCAACGATTCCGCATTTGGGTTTCTCTTGGATTGAAAAAAGTAGGTAGCTGCTTTACA GTTAATTTGTCTGTTCTGTGTTTTTTATTTCTGACCAATCTGATGATGCATTCTGGGTTTTTCTTTTTCTGTTTTGGTTC TCCAAATTTGCATGGATGGTTTTGAAGTTCAGTTTGAAGAATGTATCATGGTTTTTCATGAAAGATTTTTTTTTTCTGGG TGTGGTGGTGGTGATGATCAGAGTCATAGACCCTTTTGAAGCTTTTGTGAGATTACTCAGTTAGATTTTATTTTGGGATA ATCAGATTCTGTCTATGCTAATTTTAGTGTTTATTTCTGAGATTTTGATGAACACTTTGTTGTTTGAGAAGAAAAAATGA TCCTTTTCAATTTCAAAGGAATTATTTGATTGTGGTAGTCTTAATTATCAGGAGTTGCAATTTTTTATATCATCTGGAAA TCTCACTTGTTGGTTTGGGGCTTCTGAAATGTATCATCAATTGCAAATTTTTTTCATCCTTCCCTGTTTTTTTTTAATAA AATTGATCAGTAATTCTGATCAAGGGTTCCTTTTGGGGTTTTCTAGCCTCCAGTTGCTAGATCTATGTTCATAAATTTAA TTTTTCCAAGTTGATTTTGAAGTATTCTTATTTGGGGAATGTCTTTGGAAACTTTTGATCAGTTGCTTAAACTCTCATTA TGGGAATTGCCATTCTAAATTTAACCCTTCAGATGGAGTTTTAGATTCTTGCATGCTATTTCTGCAGCAGATAGCACATT TTATGGGAATGTAAATTGATACTCTCTCTGACATTAACTTAAGTTGCAAAAATTATAAATGGATTTGCAGATTTTTGTTG AAAGAAGCATTTATGCATTTACTAAATTTAACAATTCCTACTGCCAATTGTTTCTTGAAAGTACCTTTTTCCATTTATAA TCTCTGTGTGCAAGGAACACATCTGTTTGTGTAGCTAAATGTATAAGGAATTTTTCATGCCTTGTTTGATCATGATTCCT GTTAACTGGGGATTAACACAATGCTGTTTTCTTTAGCTGTCTGAATTTGATGCAGCTAGGGAATGATGATTTCATCATTT TAAGAGGAATGAGGAACTAGGATTATTTTGAAGAAGGAGAAAGGGTCATACTTTGAAGATTTGTGATCTCATGGCTGATT CTTCTTCCAATTTTTCTTTGAGCCTAATAAGACAAAGAAGCTTCTCAATTTTCCACAGCTCTGGTTCTAGGATAGGGATT GCTGCTGCAAAAGGTTCACCAGATTCCGAATCCGTTTGGAGCCCCACATCTCCTCTTGATTTCAAACTCTTAAATCTCAG CAACCCTTTCAGTGCCAATTCTTCTAAACCATTCCAAACAGGGCATAAGAAGAATCTAGATTGCCGTAAAATAGGCCTTG GCATAGTAAGTTCCCTTGTTAATGAAACCAAACTTAGTAGTGAGACTCATGGTGACTCTAAGAGGGGAACCATCATTTTT GGACCACAGGTGAAGAAGACTAGCCTTCTTAAATTCTCCAAGAACAACCATGAATCTATTGCATCTGATTTGAAATCTAA TTCCTTGCCAAAAAACTATGTAGTATCACTTCCTTCTGAAACCAAAAGTCCCAAATCTGAAGAGGAAAGCTTTGATGATA TCAATTGGGATTCTGAAGGTTTTAGAACTACTGTGACTTCTTTGCCTGATTCCTCTAGGTCTTCTCCATTAAAAAACTTG AATTCGCGAAACAATGATTTCTTTGAAGAAAATACAGCTTCAGCAATAAGTTTGCCTTCACCATTGAATAATTCCTTAAA AAATATATCAAGTTCACTTCCAATAACCATTGATTTTAGCAAAGGACATATAGGCTCACTATCTGCAAAAGAGATAGAAC TTTCTGAGGATTATACTTGTATAATTTCTCATGGTCCAAACCCTAAGAGAACACACATTTTTGGTGACTGCATTTTGGAA TGTCACAACAATGACTTCACTGAGTTCAGCAAGAAGGAAGAAACTGCTTTCAGATCTTCTGGTCCTTCATTTTCAGCAGG ATCAGCACCTCTTCCTTTTGACAATGTTTTGAGCTTTTGTTACTCATGTAACAAGAAATTAGATGAGGGGGAAGACATTG ACATGTTCAGGTTTGTCCTAAACTTCCTGTAATTAATATTCTGGATTTTACTCCTCTCTAAAATCACTTTAGATGGTAAA GTAAATCATTGCAAACCTTAATTGAGAAATAGCCGATTGAGGTTGTGATCTAATAGTTGCACATCTACAACAAACTATGT TGTTCTTTAAACCTCAATCATTGATTTCTCAATCAACTATTGCTGCAATGACTTACTTGACTCTCTAAAGTGATGATGCT TTTCAAACAATAAATTCTCAAAAGTCAAAAGTGATTACTCCCATTAATTCCATCATATCACAAGCATTACTTGCAGTTAC TTGTATATCTTGCAGAGGTAAGAAAGCATTTTGCTGTTTTAAGTGTAGATCAGAGGAAATTTTGGTGGAAGAGGAAATGG AGAAAAATTGTAGTAACTCAGTAGAGAGCTCTCCCGAATCAAGTTACCATGATCTGTTCTTGAAGGGGCTGTTTGTGTCC AAATAATAACATGCTTTATTATTTACCTTATTGGAGACCTTGTCCAAGTTATGAAATTGTTGCAAAGGTTGAAGATGTGG ATAATGTTATTTACAAGCTGCAACCTATGTGGTTTGTGCTGTGGAATGTGGATGATTGCTAGGCAAATTTTGCAGTGTGC TGGTTGTCATGATTCATGAACCAATTTCAGTGTTCAGTGAATAGGTAGAGGAGGCAGCATTATCCCTTGTAATAACTCAA AACAGATGTATATATGTATTGTAAAGATGAGTTGAAAGAGGCCACTGGCCCTCGCTCATCAGTTTTTTCTTTTGTTACCG ATGTCTTTTACCTTTGTTTGAACGGTTACCTCATGCTGCAAATGTGCCATTCAGATTTCTCTTAACTACTGTAGTTTGAA TAATTGACTGATTAGCCAGCAGCTAAATTTGGAATGATATGTTAATGATCTATATATACCCAGGGGCGGAGCCACCATTT TGCTTTTGCTTCAAGGGTTTATCA
CDS sequence (LotjaGi3g1v0016100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATTCTTCTTCCAATTTTTCTTTGAGCCTAATAAGACAAAGAAGCTTCTCAATTTTCCACAGCTCTGGTTCTAG GATAGGGATTGCTGCTGCAAAAGGTTCACCAGATTCCGAATCCGTTTGGAGCCCCACATCTCCTCTTGATTTCAAACTCT TAAATCTCAGCAACCCTTTCAGTGCCAATTCTTCTAAACCATTCCAAACAGGGCATAAGAAGAATCTAGATTGCCGTAAA ATAGGCCTTGGCATAGTAAGTTCCCTTGTTAATGAAACCAAACTTAGTAGTGAGACTCATGGTGACTCTAAGAGGGGAAC CATCATTTTTGGACCACAGGTGAAGAAGACTAGCCTTCTTAAATTCTCCAAGAACAACCATGAATCTATTGCATCTGATT TGAAATCTAATTCCTTGCCAAAAAACTATGTAGTATCACTTCCTTCTGAAACCAAAAGTCCCAAATCTGAAGAGGAAAGC TTTGATGATATCAATTGGGATTCTGAAGGTTTTAGAACTACTGTGACTTCTTTGCCTGATTCCTCTAGGTCTTCTCCATT AAAAAACTTGAATTCGCGAAACAATGATTTCTTTGAAGAAAATACAGCTTCAGCAATAAGTTTGCCTTCACCATTGAATA ATTCCTTAAAAAATATATCAAGTTCACTTCCAATAACCATTGATTTTAGCAAAGGACATATAGGCTCACTATCTGCAAAA GAGATAGAACTTTCTGAGGATTATACTTGTATAATTTCTCATGGTCCAAACCCTAAGAGAACACACATTTTTGGTGACTG CATTTTGGAATGTCACAACAATGACTTCACTGAGTTCAGCAAGAAGGAAGAAACTGCTTTCAGATCTTCTGGTCCTTCAT TTTCAGCAGGATCAGCACCTCTTCCTTTTGACAATGTTTTGAGCTTTTGTTACTCATGTAACAAGAAATTAGATGAGGGG GAAGACATTGACATGTTCAGAGGTAAGAAAGCATTTTGCTGTTTTAAGTGTAGATCAGAGGAAATTTTGGTGGAAGAGGA AATGGAGAAAAATTGTAGTAACTCAGTAGAGAGCTCTCCCGAATCAAGTTACCATGATCTGTTCTTGAAGGGGCTGTTTG TGTCCAAATAA
Protein sequence (LotjaGi3g1v0016100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSSSNFSLSLIRQRSFSIFHSSGSRIGIAAAKGSPDSESVWSPTSPLDFKLLNLSNPFSANSSKPFQTGHKKNLDCRK IGLGIVSSLVNETKLSSETHGDSKRGTIIFGPQVKKTSLLKFSKNNHESIASDLKSNSLPKNYVVSLPSETKSPKSEEES FDDINWDSEGFRTTVTSLPDSSRSSPLKNLNSRNNDFFEENTASAISLPSPLNNSLKNISSSLPITIDFSKGHIGSLSAK EIELSEDYTCIISHGPNPKRTHIFGDCILECHNNDFTEFSKKEETAFRSSGPSFSAGSAPLPFDNVLSFCYSCNKKLDEG EDIDMFRGKKAFCCFKCRSEEILVEEEMEKNCSNSVESSPESSYHDLFLKGLFVSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 373 | 373 | 5.3E-137 | – | |
| PANTHER | 1 | 373 | 373 | 5.3E-137 | – | |
| Pfam | 299 | 347 | 49 | 2.9E-15 | ||
| ProSiteProfiles | 305 | 349 | 45 | 19.572 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0016100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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