Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0016100 |
| Transcript ID | LotjaGi3g1v0016100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA cleavage complex 2 protein Pcf11, putative isoform 2; TAIR: AT5G11460.1 hypothetical protein (DUF581); Swiss-Prot: sp|Q8LGS1|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr|K7M3V3|K7M3V3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0016100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:1689364..1692539) extracted from Lotus japonicus Gifu genome v1.2.
GCATGCAAGTGGAGTGGAGCATGGTGAAAAATAATCTCTGATGTTATAGGTAAACTCTTGCTGATGTTTCATCACTGCAA CGATTCCGCATTTGGGTTTCTCTTGGATTGAAAAAAGTAGGTAGCTGCTTTACAGTTAATTTGTCTGTTCTGTGTTTTTT ATTTCTGACCAATCTGATGATGCATTCTGGGTTTTTCTTTTTCTGTTTTGGTTCTCCAAATTTGCATGGATGGTTTTGAA GTTCAGTTTGAAGAATGTATCATGGTTTTTCATGAAAGATTTTTTTTTTCTGGGTGTGGTGGTGGTGATGATCAGAGTCA TAGACCCTTTTGAAGCTTTTGTGAGATTACTCAGTTAGATTTTATTTTGGGATAATCAGATTCTGTCTATGCTAATTTTA GTGTTTATTTCTGAGATTTTGATGAACACTTTGTTGTTTGAGAAGAAAAAATGATCCTTTTCAATTTCAAAGGAATTATT TGATTGTGGTAGTCTTAATTATCAGGAGTTGCAATTTTTTATATCATCTGGAAATCTCACTTGTTGGTTTGGGGCTTCTG AAATGTATCATCAATTGCAAATTTTTTTCATCCTTCCCTGTTTTTTTTTAATAAAATTGATCAGTAATTCTGATCAAGGG TTCCTTTTGGGGTTTTCTAGCCTCCAGTTGCTAGATCTATGTTCATAAATTTAATTTTTCCAAGTTGATTTTGAAGTATT CTTATTTGGGGAATGTCTTTGGAAACTTTTGATCAGTTGCTTAAACTCTCATTATGGGAATTGCCATTCTAAATTTAACC CTTCAGATGGAGTTTTAGATTCTTGCATGCTATTTCTGCAGCAGATAGCACATTTTATGGGAATGTAAATTGATACTCTC TCTGACATTAACTTAAGTTGCAAAAATTATAAATGGATTTGCAGATTTTTGTTGAAAGAAGCATTTATGCATTTACTAAA TTTAACAATTCCTACTGCCAATTGTTTCTTGAAAGTACCTTTTTCCATTTATAATCTCTGTGTGCAAGGAACACATCTGT TTGTGTAGCTAAATGTATAAGGAATTTTTCATGCCTTGTTTGATCATGATTCCTGTTAACTGGGGATTAACACAATGCTG TTTTCTTTAGCTGTCTGAATTTGATGCAGCTAGGGAATGATGATTTCATCATTTTAAGAGGAATGAGGAACTAGGATTAT TTTGAAGAAGGAGAAAGGGTCATACTTTGAAGATTTGTGATCTCATGGCTGATTCTTCTTCCAATTTTTCTTTGAGCCTA ATAAGACAAAGAAGCTTCTCAATTTTCCACAGCTCTGGTTCTAGGATAGGGATTGCTGCTGCAAAAGGTTCACCAGATTC CGAATCCGTTTGGAGCCCCACATCTCCTCTTGATTTCAAACTCTTAAATCTCAGCAACCCTTTCAGTGCCAATTCTTCTA AACCATTCCAAACAGGGCATAAGAAGAATCTAGATTGCCGTAAAATAGGCCTTGGCATAGTAAGTTCCCTTGTTAATGAA ACCAAACTTAGTAGTGAGACTCATGGTGACTCTAAGAGGGGAACCATCATTTTTGGACCACAGGTGAAGAAGACTAGCCT TCTTAAATTCTCCAAGAACAACCATGAATCTATTGCATCTGATTTGAAATCTAATTCCTTGCCAAAAAACTATGTAGTAT CACTTCCTTCTGAAACCAAAAGTCCCAAATCTGAAGAGGAAAGCTTTGATGATATCAATTGGGATTCTGAAGGTTTTAGA ACTACTGTGACTTCTTTGCCTGATTCCTCTAGGTCTTCTCCATTAAAAAACTTGAATTCGCGAAACAATGATTTCTTTGA AGAAAATACAGCTTCAGCAATAAGTTTGCCTTCACCATTGAATAATTCCTTAAAAAATATATCAAGTTCACTTCCAATAA CCATTGATTTTAGCAAAGGACATATAGGCTCACTATCTGCAAAAGAGATAGAACTTTCTGAGGATTATACTTGTATAATT TCTCATGGTCCAAACCCTAAGAGAACACACATTTTTGGTGACTGCATTTTGGAATGTCACAACAATGACTTCACTGAGTT CAGCAAGAAGGAAGAAACTGCTTTCAGATCTTCTGGTCCTTCATTTTCAGCAGGATCAGCACCTCTTCCTTTTGACAATG TTTTGAGCTTTTGTTACTCATGTAACAAGAAATTAGATGAGGGGGAAGACATTGACATGTTCAGGTTTGTCCTAAACTTC CTGTAATTAATATTCTGGATTTTACTCCTCTCTAAAATCACTTTAGATGGTAAAGTAAATCATTGCAAACCTTAATTGAG AAATAGCCGATTGAGGTTGTGATCTAATAGTTGCACATCTACAACAAACTATGTTGTTCTTTAAACCTCAATCATTGATT TCTCAATCAACTATTGCTGCAATGACTTACTTGACTCTCTAAAGTGATGATGCTTTTCAAACAATAAATTCTCAAAAGTC AAAAGTGATTACTCCCATTAATTCCATCATATCACAAGCATTACTTGCAGTTACTTGTATATCTTGCAGAGGTAAGAAAG CATTTTGCTGTTTTAAGTGTAGATCAGAGGAAATTTTGGTGGAAGAGGAAATGGAGAAAAATTGTAGTAACTCAGTAGAG AGCTCTCCCGAATCAAGTTACCATGATCTGTTCTTGAAGGGGCTGTTTGTGTCCAAATAATAACATGCTTTATTATTTAC CTTATTGGAGACCTTGTCCAAGTTATGAAATTGTTGCAAAGGTTGAAGATGTGGATAATGTTATTTACAAGCTGCAACCT ATGTGGTTTGTGCTGTGGAATGTGGATGATTGCTAGGCAAATTTTGCAGTGTGCTGGTTGTCATGATTCATGAACCAATT TCAGTGTTCAGTGAATAGGTAGAGGAGGCAGCATTATCCCTTGTAATAACTCAAAACAGATGTATATATGTATTGTAAAG ATGAGTTGAAAGAGGCCACTGGCCCTCGCTCATCAGTTTTTTCTTTTGTTACCGATGTCTTTTACCTTTGTTTGAACGGT TACCTCATGCTGCAAATGTGCCATTCAGATTTCTCTTAACTACTGTAGTTTGAATAATTGACTGATTAGCCAGCAGCTAA ATTTGGAATGATATGTTAATGATCTATATATACCCAGGGGCGGAGCCACCATTTTG
CDS sequence (LotjaGi3g1v0016100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATTCTTCTTCCAATTTTTCTTTGAGCCTAATAAGACAAAGAAGCTTCTCAATTTTCCACAGCTCTGGTTCTAG GATAGGGATTGCTGCTGCAAAAGGTTCACCAGATTCCGAATCCGTTTGGAGCCCCACATCTCCTCTTGATTTCAAACTCT TAAATCTCAGCAACCCTTTCAGTGCCAATTCTTCTAAACCATTCCAAACAGGGCATAAGAAGAATCTAGATTGCCGTAAA ATAGGCCTTGGCATAGTAAGTTCCCTTGTTAATGAAACCAAACTTAGTAGTGAGACTCATGGTGACTCTAAGAGGGGAAC CATCATTTTTGGACCACAGGTGAAGAAGACTAGCCTTCTTAAATTCTCCAAGAACAACCATGAATCTATTGCATCTGATT TGAAATCTAATTCCTTGCCAAAAAACTATGTAGTATCACTTCCTTCTGAAACCAAAAGTCCCAAATCTGAAGAGGAAAGC TTTGATGATATCAATTGGGATTCTGAAGGTTTTAGAACTACTGTGACTTCTTTGCCTGATTCCTCTAGGTCTTCTCCATT AAAAAACTTGAATTCGCGAAACAATGATTTCTTTGAAGAAAATACAGCTTCAGCAATAAGTTTGCCTTCACCATTGAATA ATTCCTTAAAAAATATATCAAGTTCACTTCCAATAACCATTGATTTTAGCAAAGGACATATAGGCTCACTATCTGCAAAA GAGATAGAACTTTCTGAGGATTATACTTGTATAATTTCTCATGGTCCAAACCCTAAGAGAACACACATTTTTGGTGACTG CATTTTGGAATGTCACAACAATGACTTCACTGAGTTCAGCAAGAAGGAAGAAACTGCTTTCAGATCTTCTGGTCCTTCAT TTTCAGCAGGATCAGCACCTCTTCCTTTTGACAATGTTTTGAGCTTTTGTTACTCATGTAACAAGAAATTAGATGAGGGG GAAGACATTGACATGTTCAGATCAGAGGAAATTTTGGTGGAAGAGGAAATGGAGAAAAATTGTAGTAACTCAGTAGAGAG CTCTCCCGAATCAAGTTACCATGATCTGTTCTTGAAGGGGCTGTTTGTGTCCAAATAA
Protein sequence (LotjaGi3g1v0016100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSSSNFSLSLIRQRSFSIFHSSGSRIGIAAAKGSPDSESVWSPTSPLDFKLLNLSNPFSANSSKPFQTGHKKNLDCRK IGLGIVSSLVNETKLSSETHGDSKRGTIIFGPQVKKTSLLKFSKNNHESIASDLKSNSLPKNYVVSLPSETKSPKSEEES FDDINWDSEGFRTTVTSLPDSSRSSPLKNLNSRNNDFFEENTASAISLPSPLNNSLKNISSSLPITIDFSKGHIGSLSAK EIELSEDYTCIISHGPNPKRTHIFGDCILECHNNDFTEFSKKEETAFRSSGPSFSAGSAPLPFDNVLSFCYSCNKKLDEG EDIDMFRSEEILVEEEMEKNCSNSVESSPESSYHDLFLKGLFVSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 362 | 362 | 4.4E-125 | – | |
| PANTHER | 1 | 362 | 362 | 4.4E-125 | – | |
| Pfam | 299 | 329 | 31 | 1.3E-5 | ||
| ProSiteProfiles | 305 | 365 | 61 | 9.856 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0016100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…