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LotjaGi3g1v0018900.1

Overview

Field Value
Gene ID LotjaGi3g1v0018900
Transcript ID LotjaGi3g1v0018900.1
Lotus japonicus genome version Gifu v1.2
Description 50S ribosomal protein L7/L12; TAIR: AT1G70190.1 ribosomal protein L7/L12 domain-containing protein; Swiss-Prot: sp|B3EER1|RL7_CHLL2 50S ribosomal protein L7/L12; TrEMBL-Plants: tr|A0A072V9A8|A0A072V9A8_MEDTR 50S ribosomal protein L7/L12; Found in the gene: LotjaGi3g1v0018900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:1960985..1968431) extracted from Lotus japonicus Gifu genome v1.2.

GTTTCTCTATGAGACATTTACATTAGGCCACACTTGGCCCATTAGGTTTACACCACGCTCACAACCCACTCACCACACGC TCACTGCTTCAGACTCAGCTCATCTCTCCTCTCAGGCTCACGGCGACGACGACGACGACGGCGGCGGCGCGGCCTCACCT CAGCCTCTCGTTTCAGCTCCGGTAATGCTCTGTTTTGGCTTTGATGCTCAGATGTGCTGTTTCGATTCTCTGTTTTTCGA TTGGATTTCAATGCTTTCTGTGTCGAAAATTGAAATGATCTTCATTTCCATCTTATACGACTCGTTTGTCTCCATGATCA TGCTCACACACAAGCACTCAATTAGATTCCACACCATATGCACATTGATGCTAATTGCTTAGATTAGGTTGGTCACACCA GAGAGAATGGAAAAGGAAAAGGCTTAGGAGGGTGGAAATTTGGGAATGGATTTCAAGCATCCCTAGTTAGATAGCTACAT TTATCAATTTGACAAAACTTGCAATTGCTCATTGGTAACCAATTTCACTGGGTCTTACATTGGCCCATTTCATTGTAGTG TTTGAGATTAAGCAACCCTGTCTTTATTGTTGTTAGTTTTTAGATAATCACTTAAGCTGTAGTAGACTAGGGCCCCGTTT GGAAACACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGCTTATGACATAATCGCTTATTCATAAGCTATTTTAA ATTTTTTATTGAAATAAATTGAAAATAAGCTATATATAAGCATAAGCTCTTTTCCATAAGCTATCCTGAGTAGCTTATGA AAATAAGCTCAAAACAGCTTATGGTAGGTCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGTCTATGCT ATCAGATAAGCTCAAATAAGCTTTTCCAAACGGGGCCTAGTTAGTAGTACTAGTAATAATCTTTTAAATGCTTCTATTTA TTTGGCACACTTCTATTGCTACATGATTATTTCTGTTTTCAGCTGGCATGAGCTTTATGCGGATATTGTGGAGTATTCAA TTGTATTAGTGTTACTAAAATTTGCACTCTTTATTTTACTTGTTGAATACTTGAACCACATTTGATAAACCAGGTTTTAT GTGAGAAAAAATATTCATTGATATTAATAAAGGAACTATGGAATGGGAGTTGATTAGGATGAAGATAAAAAAATGACTCG TTTTTTTATAAAGATAAACGTAAGAAGATTGCAAATGAGAAGTACTCAGTTGGTGAAAAGTATGTATCAATAATGTGATA TTGAGTTATGAAAAAAAAATTATGTGATATTGGTTTCTGGAACTAGATTTTGTCATGGAAGTCGATTTTCTTTTATGTTA GAAAATATATTCATTGATATTAGTAAAGAGACTGTGGAATGGGAATCAACAAGGATGAAGATAAAAAAGGGACTCGTTTT TTTATAAAGATTTGTAAGAAGATTGCAAGTCAGAATTACACGGTTGGTGAAAAGTATGAATCAATAATGTAAAAATGGTG TCTGGAAGTAGATATTTGTCATGGAAGTAGCTTTCCTTTTATTCTCTTAAATAGCTAGTTCTTATCATGAACTTGTAGCC GTTTTGTTACATCACTTCTTACATTATACATGTATAGTCATTCAAGTGAAAGTAAAACTGATTTTTTGTTGCTGAAATGG GATTTAATTTTCTGTTTAAATTGAGCCAACACCTTTTGTCATGATATTGTGCAATGCCTTAACTTGATGCTGGAGATCCT ACTTATTTAGCACCCAGATGGCTGACATGTTAGTCTTGAGTTAAATAGAAAATGGTTGGCAGGTTCTGATCATACCTGGT AACCATTGGATTGGAGGCAGAGTTGGATATCTATTATCCACCCTTGACGAGGATAGGGCAGGACGAGGGAAGCCGGAACC TACTTTATTTCTATGCCTATTTGGCAGCTAGGTTTAGAAATTTTTTTTTGTAGTGTGATTGTTGTTTCATGTGTTTTCCA TTCTGTTAAGCTGTAGACTTCGCATAGTTTTGATATGCTTCAAGAACTGTTTACTTTTTTGAAATTATCCATAGCCTTGG AATATGCATAATGTTGGGCACCATTCATTTTAGACATAGTAATTTATTCCTATCAATGTAATATTTGAGGACTTATGTAC GATTTGATCTATATATGACAAACAATATTTCGATAAGCTTTGGATGAAAATATATATAACAAGATGTTCTGTTTTGTTCT GCTGTCAGGTTATCTATTTCTGGAAGAGGAGTTCACAATGTCTGTCATGCTGTGCTGATTAGAGAGGTAGCAACGTTACG AGCCAAGAATGAGCTTGTTTTTAAGATTAAAACATTATTTACCCAATGTTTTACACGCACAACCTCAACCTCTTCATACA ACTGTAGTGGGGCTTCATGCTAGGAAATTAAATGTATTTTCAAGAAACTTTGGCCAAGCTGCTAGGAAAGAGGAAGAGGA AGATGTAGAGGAAGTGGAAATTGATCAAAGAAGTCTCCCGGCTGATTTTGATCCTGCCACATTCGATCCTACTGACCATC GTGGCCCTCCATCAGAGAGGGTTTTCAGGCTTGTTGATGAAGTGTCATCTCTAACGCTAGCTGAAGGTGCTGAATTGGGT CTCCTTCTGATGAACAAAATGGGGATAAAGGACTTGCCTAATATTGGATATATGAAACCAGGAGCAGCAAATTTGGCTGC AATGGCAGCAAAAGCACCAGCCGCAGCCAAGGAGGAGCAAAAGCCAGAAAAAACTGTATTTGAATTGAAACTGATGTCCT ATGAAGCAGCTTCCAAAATTAAAGTCATCAAGGAGGTCCGGGGGTTTACTGATCTAGGTTTGAAAGAGGCCAAGGATTTA GTGGAAAAAACACCTTCTATCATAAAGAAAGGTGTTTCAAAGGAAGAAGGTGAACAGATAATAGAGAAACTGAAAGCTCT TGGTGCAAATGTCGTCATGGAATAACGTGATTTATTGTGTTTTTCTGAGAGATGTTTCTCCTAGTATTCAGAACTTTTAT AAGTGATCTGAAATTTAGAAAATTTAATATAGTTGGCCAAGGAAGGATACCGGAAATTTTGCTAGTGCTATTTTAAAGTT GTGCTCACTTTCAGCTTAAACTGGAATTTGATGTTGTGTAGCTATTAAACATCCTTTGTTTCCCTACTGATGGAATAAAA GTACTATTCATGTTTTTGGTCTCCATTTGCTTACTACATATTGAATAACTTTAATCTGGTTTTCAAAAAAAAAAAAAAAA ACTTTAATCTGCATCTTCATACATAAATTGATTATACATAGAGATACATTTAAATAGCGTATTCGGAACAGCTTCTCTTC AATCAGAATTAATTCTGAAACATAGAAGCTACCACAGAAGCTTTTTCCAAGAACTAATTCGGATTTCATAATCAATTGTA GAAGGGTTTGTAAACATACACTATAGTCTATTCATATTGCGACTACTACTCGTCTAAACATGGAAAAAAGAATATGACTG GTGTTTAACATATCAACCAGGTAATATTTGGTTCTTCTGCACCTCTATCTCTGTGGAGCCTTCAGTTTAATGTTCATCCT GAACCCCATTAATCCTTAGTTCAGACAACTCTTCCTCCTTGGAGCCATTTTCTTCACTAATCTTCGAGACTTTATCAACC TGACCCACGTTCTGCAATTCAGTTAACTCTTTCTCTTTTGAGCCAATTTCTCCACTAACCTTGGAGCCGTTTTCTTCAGC TACCTTGGATATTTGATCAACAGTAGGTCCATAAGCCCAACTGCATATTAGATAATACACTAAATTAAGACCACTAATTC CAACAACAACCCAGTAGTACTTGTCGAAACGACCCTTGTTTATGTTATCTGAAACCCAACCCTCTTTTCCTCCACTTGAG GTAATGTTTTCCACAGCACTGAATACAAAAGAAGATACAATGTTCCCTGCAGCCATTCCCAGTCCAAGAAGGGAAGAAGC AACACTAGACATAGTCCTAGGAAACTCAGTGTAATAAAACTCATTCTGACCAATTGCATTGAATGCTTCAGCTATGCCAC CCAAGCAAAGCTGAGGGGCCAGCCACATTGCCGACATGTTCAACACTCCATGAGCATTGTTGATATATCCCGCCTCAATT GCTCTCTTTCGCCTTATGGTCTCCAAGGTTGCTGAAGTTACCAAGTGGAGAAAAGAGAAAAGCAATCCAATTCCCATTCT TCTCTTTGCACTGATCCTAACTGGTTTTCCTCTGATCTTCGATGCTAGAGGAAGAAACGCGCGATCATAGAGAGCTATCC ATAGAAATATTACAGCTACCAGGATTACACTGAAAGACCCTGCTGGAACTTCAAAGTGAGAGGTGATATGTCTGTTCATG GATTTAGCTTGCAGCAATCCAAATGAGCCTCCAATGTTAAGGGACATCATGATCCCTGAAGACCACAAGGGAATGACTCT GATAATAGCTTTTAGTTCCTCTACTTGATCTATTGTGCAAAGTCTCCAAGGATCTGATGCTGACCCATCAGAGGTTATAT CTTGTTTTGGATCCTTGATGACACAAGCTTTGTTTAGAAACCTGGAAAATAAAGCATGGGATGAAATGAAATGTTTCCAC AGAAAAGATGCAAAGATCCTGTTTGGAATACTAAATAGCACTTGGAGCTTATGAACCTATTTGGATGCAGACCAAAGAGC CCTTATTGGAGCCTATGTAGTGTATCTTCACATAGATAAGCTCCAATAAGTGCTCTTTGGTATGTATTGACATAGGCTCT ATATAGTACTAGATAAGCTTCAAAAAGTGCTATTTGGTATGTATCCAAGCAAGCTAAGAAACTAAAAGAATGGTAAGTTG GTTCTACCTTAGTTTATCAGTTGGAATAACAAGATCTGAATCCTTCCTACGATGGTAAAGTTCGGCCGAGTTCTTAGGTG GTAATGAAAGTTTTCTGTTCTTAAATGCAGCAACAGTTACTTGGGCAAATCCAGTGATCAAGCTGGTTTGTATTTTGTTC TTTATATAAAGTGGAGAAGCAAGGAGGAAGAAGACAGTAGATAAGAGCATGAGCGCTGCTGGAATTCCAAAACCAAGTTT CCATCCAAGATGGTCTTGGATATATACTATTCCTGTGAGGGCAATTATGACAGCAATAGTTGTAGAAGCATAGTACCAGG TGAAGAATATTTCCAAGACCCTGGGGTTATTGGAGTTGTTTTTTCTATTCACCTGGTCTGCACCAAATGCTAAGGAACAT GAAAGGCCACCATTTCCAATGGACATGAGAGCAAAAGCAGAGAGCAAGATTGCCATTTGCCCTGACGTTGCTGATTTACA ACTTTCAGCTGCATGGTTGCAAGTGGGAGGCCTTGCCTGTGGGGTCATGGCTGTTAGCCAGAGGAGTGCCATTCCCTGAT ACCAAAGAAAAAAAATGAAAATGTTACCGAGTGCGTATTTGGATCAACGTTGTCAAAATGGAATTTGGTAAAATTTATGG TAAAAGTGAGTTAAAGTGACTTGAAAGTGAAGTGATTTATGTTTGGACACATTTATGGGAAAAGTGACTTCAATAGGGAA ATGCTCTTAAATCCAACTATAAAATCACAGAATTGATTATGTCTACAGCAAAAGCTACTATCTCTAGCTTCTCGAAGAAT TGATTTTGGGAATAAAATTTATTCTCTAAGCACCTGAAAGTGATTCTTGTTTATGAGGATTGATTCTAAGGAATGACTTG TGTGATTGCAGGCTGCAGCACTACTTTCAGAACATTGATATTACTTAAGTTTCCATGGACTTAGTTGAATGTTTACTAAC ATCCTTGATCATTCATTCCAAAAACCAAAGAGATTTTAGAATATTGACAAATTCCACAATGGAATCATTATATGTAATAG AGCAAGACAATTCACACAAAACTATTTTCTTCTGTTGTACCTATCCAATATTCTGAAAACATCAAACTATGAGAGCAAAT TTTCATTCTTTCTCATATAACAAGGGAATATGACATGTCATCAACCATTCTAATTCTGAATCATAGAAAGGGATTTTAGT TCGAGGAGACCCTTGAACAGAATCAGAAAGTTTATATGAACTTTGCTGTCATAGTTAATATTAAAAACCAAAAGTGGTTG ACCAGCTTTATCTTCTTTTTCAGGAAAGCTCAACCTCATGCACCAAAAAATCAATTCATTACTGCTATCCTAAAAAAAAC TACATGCTATCATTATTAAACAAGAGTACCTGCTCTTCAAGTTTCATTGACAGATAGCAAGTTAGCAACAAGGATGAAAA CTACAACCATTTTCCAATCACAAAGTCAAGAGATAAGTAAAGTTCATGTATCAGAAAATAAAGTAAGAGAAAATGAATAC CAGCAAAGTGATGGCAGAACCTAATCCAACAGCAAGGAACCGACCCAGATAAGAATCAGCAATGAAAGCACCCACCACAG GCGTGAAATTGCTGCTTGCAGAAGACAAGAGAAGTATCTGAGTTGCTGTGCCAAGATGAAGCCTGTAAGTCCCCATCAAA TACAATATCATGTTTGGCAATAGGCCTATGGTTGCTACCCTTGCAAGTGCCTCATTTGCTGCAATTCACATCAATAACCA AACACAACAACCCATCAACAAAAATGAGTCTCAAAGTAAAAAGAAAAAAAAAATCCAAGCTTTCTCTTTGATAACCAAAT CAAAAACCAGATTGCACAACAACCCATCAACAAAAATGAGTCTCAAAGTAAAAAAAAAAAAAATCAAACCTTCTCTTGAA TAACAATCAAATAAAAAACCAAAAAAAATGAATCTCAAAGTAAAAAAAAAAAAATCAAACTTTTATGTTTGATATGAGCA AAAGTGTACCAACCAATAATGAAAGGCATGGTAATTAGACCACCCTTGCGCCTCTGTGGTTGTGATTCATCTTCAACTGC AGCATAAGCAAGCTCAACTTCCTTGTCCATTTTGATTACTATCTATCTATCTATGTATCTCTTGAGTCTCTTTTTGATAA GTTGAAGAGAGCACAGAGAAAGAGAACACTAATAAGTAGCAATTTATGTTCATGAAGATTTAGATAGAAGTAGATAGATA TCAGTCACAGAGAAGTGTGGAGTGATGTCAGAGCTTGCGATGAGTCATGAGTGGGACAATCAAACTCCATGTGTGTTCAT ACTGTCCCTGCTAAAACTGCATCTCTGGAATGCAATATGCTTGTCCATCTCACATGATTGTTAATAGAGCTGTTACACGT TTTCATTCAGTATTGAGTCGACATTTTTCCGACACACGCATTAGCGATGATTTTTAATTAAATATTTTTATTTTTCTCAT TCGATTTAATCTTATTTTTTCATTAATAATTTTTTTTAATGAAGTTCTGTTAAATAAATTGTTGGTATAGTTCATAGTAA TCACCGC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0018900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGCTTGTTTTTAAGATTAAAACATTATTTACCCAATGTTTTACACGCACAACCTCAACCTCTTCATACAACTGTAGT GGGGCTTCATGCTAGGAAATTAAATGTATTTTCAAGAAACTTTGGCCAAGCTGCTAGGAAAGAGGAAGAGGAAGATGTAG AGGAAGTGGAAATTGATCAAAGAAGTCTCCCGGCTGATTTTGATCCTGCCACATTCGATCCTACTGACCATCGTGGCCCT CCATCAGAGAGGGTTTTCAGGCTTGTTGATGAAGTGTCATCTCTAACGCTAGCTGAAGGTGCTGAATTGGGTCTCCTTCT GATGAACAAAATGGGGATAAAGGACTTGCCTAATATTGGATATATGAAACCAGGAGCAGCAAATTTGGCTGCAATGGCAG CAAAAGCACCAGCCGCAGCCAAGGAGGAGCAAAAGCCAGAAAAAACTGTATTTGAATTGAAACTGATGTCCTATGAAGCA GCTTCCAAAATTAAAGTCATCAAGGAGGTCCGGGGGTTTACTGATCTAGGTTTGAAAGAGGCCAAGGATTTAGTGGAAAA AACACCTTCTATCATAAAGAAAGGTGTTTCAAAGGAAGAAGGTGAACAGATAATAGAGAAACTGAAAGCTCTTGGTGCAA ATGTCGTCATGGAATAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0018900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLFLRLKHYLPNVLHAQPQPLHTTVVGLHARKLNVFSRNFGQAARKEEEEDVEEVEIDQRSLPADFDPATFDPTDHRGP PSERVFRLVDEVSSLTLAEGAELGLLLMNKMGIKDLPNIGYMKPGAANLAAMAAKAPAAAKEEQKPEKTVFELKLMSYEA ASKIKVIKEVRGFTDLGLKEAKDLVEKTPSIIKKGVSKEEGEQIIEKLKALGANVVME
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45987
33 218 186 7.7E-93
IPR000206
PANTHER
PTHR45987:SF1
33 218 186 7.7E-93
IPR015608
Hamap
MF_00368
82 218 137 16.618
IPR000206
CDD
cd00387
83 217 135 3.35039E-38
IPR000206
Gene3D
G3DSA:3.30.1390.10
144 217 74 2.9E-25
IPR014719
SUPERFAMILY
SSF54736
147 217 71 1.12E-19
IPR014719
Pfam
PF00542
151 216 66 2.2E-21
IPR013823

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0018900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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