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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0020500 |
| Transcript ID | LotjaGi3g1v0020500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein NUP35; TAIR: AT3G16310.1 mitotic phosphoprotein N' end (MPPN) family protein; Swiss-Prot: sp|O04326|NUP35_ARATH Nuclear pore complex protein NUP35; TrEMBL-Plants: tr|A0A0L9UP68|A0A0L9UP68_PHAAN Nuclear pore complex protein NUP35; Found in the gene: LotjaGi3g1v0020500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2096648..2099543) extracted from Lotus japonicus Gifu genome v1.2.
AGCCCTAACTACAACGAAGTAGCTCATTGATTCAATTATTTGTTCCTATGTGTGATTTTCAGTGTTATTGCGATTTCGAT TCGATGCTTCTAGCTGTTTACATCTCACAGCTCGACCTAGCTTGCTTGTATCGATCTTCTTCGTTTTCGATTTTTGGCTG CAGCGTATTCAATACTATGAATTCTCTGTAAATTTCGGATTGGTGTTTGTTGATGAATTAGTAGCACAATTTCACAGGCA TGGATGCGTTGTTGTGATTATTTTTTCATATTTTTTAATTGGTAGGTTACAGGACAAAATGAAATGAAATTGAATTAGCA GTTAAATTTTCCAGGCTGTTGTTCTATAATATTGTGAAAAATTCTTGGTAGGTTACTGGAGAAAATGGAATAGAATTGAA TTAGTAGTTAAATTTCCCCGGATATTCTATAATATTGTCAAAATTTCTTAGTAGGTTACTGGAGAAAATGAAATTGAGTT GAATTAGTAGTTAAATTTCCCTGGATGTTCTATAATATTGTAAAATTCAGCTTGTGGAAGGTTGAATAACTTTGTAGTTT GTAGTCTAATGAACTTAGCTTCATGTTAAATCTGTTTATTGTTCAATCCTGAGGGATTCAATTCTTTCAGTGAATTTGGT TTTAATGCATGTGTTATTGTGTTATGTTGGCTTGTTTTGCAGATATTAACTATTTTTCACTTAAGTAGATAACATAATGA GTACCACAGTGCAAAGAACTCCAAGAAGTGGTAGACAGTCATTATTTTTCCAGGATTTAGCTTCACCCATTTCTACACGG AGGGGAAAGTTTTCTAGTCCTGGCCAGGCGGCTTCAGCGTCTGCTCTATGGCGTGAAAACTATGGTAGTTCGGACCTTCC TCCGCCTCCTGTTTTCACCTTGGAGGACAGATCAGACCTTTCTCCCGAGTCGGGCATATTGGATTATCAGTTATCCCCTG AGCCCAAGTCAGACCCTAGGACTCCAACGCAAACTTCAAATAGGGAATTTTCAACTCCGGGGAAAGGTAAATCTGAGGCC AGCACATCTTATGCTTTAAGGGGGTTGCAGCAGAATCAACAGAGCTCACCAGGTTTGAACTGGTGGTCACCTGCAACTGC AAAGAGTGGTGGTGAACAAGATGAGAAGGGAAGGAGTTCACCTGTTGAGGGTGTAGTTCAGCATGGCGCTTTGATAACTC TTCCTCCACCACTGGAAGTTGCTAGGCCAGAGGTCCAGAGAAATTCCTTGCCAGCTGGGAATCTCAATGAGGAAGAATGG GTAACTGTATATGGGTAATGTTTTAACTCTGCTTTAGCGCTTTAGTATTTATGTTTCCTCTATTGATGAGGAATAACTGT AATGTTTCCACTATAAATCTAATTATAAGCTTTTGTTCTTGAATTTCTGCACATTTTACAATGATATTGTTTTAAGGCTG TCTTCAATTCTTATGTATTTCAAAATTTTACATAATTATGATTTCAGTCTTAATGCTGTATTTAATGGTTAACTCAATTA GAATTTGAGTGCTGATTGAGTTTGTATATTTTTTGGGAGAGGAAAATAGTTTTTTTTTTAACTTATGTCATCTTTAGCGT TTGCATATTATCATCTTCTATGGATTATATAAATTATTTTTTCAAGCTTTATGACACAATTTTCATAACAAAATACAAAC ACTTAATAACTACTAAGCAGTAATTTGTTAGTTTAGAAGTTTTCTAATTGCCTAAATATGATGTCTATTGCGGGAGTTTC CGAAGTGCAGTTTTTCTTTTGTGATGAATATATTTTTAGCTTGGAGAATATGCTCTTGAATATCTTTCATTGGACCTATT GAACCTTTTGCTGTTGTGTTTGAGATGTGAAATTGAAATTAATAAGCTAAAGATGTAGACTTTCTATTTCGTTTACTCTT ATGCATGCTTTTGAAAGTGCTTTTTCTGTGCAGATTTTCTCCATGTGAAACTAATTTGGTTTTAAGGGAGTTTGAAAAAT GTGGCCAAGTTTTGAAACATGTTGCTGGTCCTAGAGATGCTAACTGGATGCATATTTTATATCAGGTTTGCAATCTTTCT CTTGCCTGAACTTAATGATTACAGTTTTCTTTATAAAGCTAATTGGATGTTGTATGCTAATCCAAGATCATCCATACATG CTGTTTAGAGTTTAAACATTGCTATCATAGTCTTCTTATCAATATGTAAGGATATGGTTCCAGATGCTTTTGTTTTTTTG AAAACTACCTATAGTTTCCTTGAAAACTGAAAGTGGTTTGTTAGTTTCTGTTTGTCAACTAACTTAGTGCCTGCCTATAT ATACCACTTAGCGCTTAATAAATTTCTTGCTGATGCAGAATCGATCTGATGCTCAAAAAGCTCTTAACAAGAATGGAATG CTAATTAACGGAGTCCTAATTGTTGGTGTGAAACCCTTGGACCCCATGCAACGTCAAGCTTTGAATGAAAGGCTTAACAA TCAGGGATTTATGCCCTTACCTCTACCTTCTGGTAGAAATGCAGAAGCGAGCACATCAAAAGCTCCTTCTAGACCATATT ATCTGCAGAATGGCAACTCAACTGCAAGGCAGAATGGAGGTACTATTGCTTCCCCAACAAAATCATTGGTGTCCAAGATC ATGGACTTGATGTTTGGAGTCTAGAGTACCTGTTCTGGTGAATCAAACTATATCATTTTATTGTGTTGTAAGCAATGATT TTACTCTTTCAGCTATTCATATACCCTGAAGAGGTTCGGCTCGTCTTGTTTATTGAATTTGAGTTGGAATGCTTACTATT TGGATCTCAGTTGTCACAATTTATGGCATCTTAACATTTGCAAACTTATGGATGATTTTTGTGTACATGTAGAGAAGGAG CTTTCTCTCCCAGGTT
CDS sequence (LotjaGi3g1v0020500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTACCACAGTGCAAAGAACTCCAAGAAGTGGTAGACAGTCATTATTTTTCCAGGATTTAGCTTCACCCATTTCTAC ACGGAGGGGAAAGTTTTCTAGTCCTGGCCAGGCGGCTTCAGCGTCTGCTCTATGGCGTGAAAACTATGGTAGTTCGGACC TTCCTCCGCCTCCTGTTTTCACCTTGGAGGACAGATCAGACCTTTCTCCCGAGTCGGGCATATTGGATTATCAGTTATCC CCTGAGCCCAAGTCAGACCCTAGGACTCCAACGCAAACTTCAAATAGGGAATTTTCAACTCCGGGGAAAGGTAAATCTGA GGCCAGCACATCTTATGCTTTAAGGGGGTTGCAGCAGAATCAACAGAGCTCACCAGGTTTGAACTGGTGGTCACCTGCAA CTGCAAAGAGTGGTGGTGAACAAGATGAGAAGGGAAGGAGTTCACCTGTTGAGGGTGTAGTTCAGCATGGCGCTTTGATA ACTCTTCCTCCACCACTGGAAGTTGCTAGGCCAGAGGTCCAGAGAAATTCCTTGCCAGCTGGGAATCTCAATGAGGAAGA ATGGGTAACTGTATATGGATTTTCTCCATGTGAAACTAATTTGGTTTTAAGGGAGTTTGAAAAATGTGGCCAAGTTTTGA AACATGTTGCTGGTCCTAGAGATGCTAACTGGATGCATATTTTATATCAGAATCGATCTGATGCTCAAAAAGCTCTTAAC AAGAATGGAATGCTAATTAACGGAGTCCTAATTGTTGGTGTGAAACCCTTGGACCCCATGCAACGTCAAGCTTTGAATGA AAGGCTTAACAATCAGGGATTTATGCCCTTACCTCTACCTTCTGGTAGAAATGCAGAAGCGAGCACATCAAAAGCTCCTT CTAGACCATATTATCTGCAGAATGGCAACTCAACTGCAAGGCAGAATGGAGGTACTATTGCTTCCCCAACAAAATCATTG GTGTCCAAGATCATGGACTTGATGTTTGGAGTCTAG
Protein sequence (LotjaGi3g1v0020500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTVQRTPRSGRQSLFFQDLASPISTRRGKFSSPGQAASASALWRENYGSSDLPPPPVFTLEDRSDLSPESGILDYQLS PEPKSDPRTPTQTSNREFSTPGKGKSEASTSYALRGLQQNQQSSPGLNWWSPATAKSGGEQDEKGRSSPVEGVVQHGALI TLPPPLEVARPEVQRNSLPAGNLNEEEWVTVYGFSPCETNLVLREFEKCGQVLKHVAGPRDANWMHILYQNRSDAQKALN KNGMLINGVLIVGVKPLDPMQRQALNERLNNQGFMPLPLPSGRNAEASTSKAPSRPYYLQNGNSTARQNGGTIASPTKSL VSKIMDLMFGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 150 | 150 | - | – | |
| PANTHER | 1 | 331 | 331 | 1.1E-110 | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 1 | 331 | 331 | 1.1E-110 | ||
| PIRSF | 3 | 331 | 329 | 1.3E-112 | ||
| MobiDBLite | 84 | 135 | 52 | - | – | |
| Gene3D | 183 | 256 | 74 | 4.6E-24 | ||
| ProSiteProfiles | 183 | 264 | 82 | 33.38 | ||
| Pfam | 184 | 267 | 84 | 5.9E-26 | ||
| SUPERFAMILY | 186 | 261 | 76 | 1.68E-15 | ||
| CDD | 186 | 259 | 74 | 3.12125E-35 | – | |
| MobiDBLite | 275 | 314 | 40 | - | – | |
| MobiDBLite | 283 | 314 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Nucleocytoplasmic transport | The directed movement of molecules between the nucleus and the cytoplasm. | ||
| Cellular component | Nuclear membrane | Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space. |
Expression pattern of LotjaGi3g1v0020500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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