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LotjaGi3g1v0022600.1

Overview

Field Value
Gene ID LotjaGi3g1v0022600
Transcript ID LotjaGi3g1v0022600.1
Lotus japonicus genome version Gifu v1.2
Description Charged multivesicular body 1; TAIR: AT1G17730.1 vacuolar protein sorting 46.1; Swiss-Prot: sp|Q8LE58|CHM1A_ARATH ESCRT-related protein CHMP1A; TrEMBL-Plants: tr|I3SH56|I3SH56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0022600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:2484805..2485416) extracted from Lotus japonicus Gifu genome v1.2.

GGAGGAAGCGCAGAGAAACTGATGAACCAGATCATGGAACTCAAATTCACCTCAAAATCTCTTCAACGCCAAGCTCGAAA ATGCGAGAAGGAAGAGAAATCGGAGAAGCTCAAGGTCAAGAAAGCAATCGAAAAGGGCAACATGGACGGCGCACGAATCT ACGCCGAGAACGCCATCCGCAAACGCACCGAGCAGATGAACTACCTCCGCCTCTCCTCCCGCCTCGACGCCGTCGTCGCC CGTCTCGACACCCAGGCCAAGATGAACACCATCAGCAAGTCCATGGGGAACATCGTCAAGTCGCTTGAGTCTACTCTTGC TACTGGGAATCTTCAGAAGATGTCTGAGACTATGGATAGCTTTGAGAAGCAGTTTGTTAATATGGAGGTTCAGGCTGAAT TCATGGAGAGTTCCATGGCGGGATCGACTTCGCTGTCTACTCCTGAAGGTGATGTTAACAACCTTATGCAGCAGGTGGCT GATGATTATGGCCTCGAGGTCTCGGTTGGGCTGCCTCAGGCTGCTGCCCACGCGGTTCCGGTTAAGGAAGCTGAAAAGGT TGATGAGGATGATCTTTCCAGGCGCCTCGCGGAGCTTAAGGCCAGAGGTTAA 

CDS sequence (LotjaGi3g1v0022600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACCAGATCATGGAACTCAAATTCACCTCAAAATCTCTTCAACGCCAAGCTCGAAAATGCGAGAAGGAAGAGAAATC GGAGAAGCTCAAGGTCAAGAAAGCAATCGAAAAGGGCAACATGGACGGCGCACGAATCTACGCCGAGAACGCCATCCGCA AACGCACCGAGCAGATGAACTACCTCCGCCTCTCCTCCCGCCTCGACGCCGTCGTCGCCCGTCTCGACACCCAGGCCAAG ATGAACACCATCAGCAAGTCCATGGGGAACATCGTCAAGTCGCTTGAGTCTACTCTTGCTACTGGGAATCTTCAGAAGAT GTCTGAGACTATGGATAGCTTTGAGAAGCAGTTTGTTAATATGGAGGTTCAGGCTGAATTCATGGAGAGTTCCATGGCGG GATCGACTTCGCTGTCTACTCCTGAAGGTGATGTTAACAACCTTATGCAGCAGGTGGCTGATGATTATGGCCTCGAGGTC TCGGTTGGGCTGCCTCAGGCTGCTGCCCACGCGGTTCCGGTTAAGGAAGCTGAAAAGGTTGATGAGGATGATCTTTCCAG GCGCCTCGCGGAGCTTAAGGCCAGAGGTTAA 

Protein sequence (LotjaGi3g1v0022600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNQIMELKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAK MNTISKSMGNIVKSLESTLATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGLEV SVGLPQAAAHAVPVKEAEKVDEDDLSRRLAELKARG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 195 195 2.1E-121
PANTHER 1 195 195 2.1E-121
Coils 4 24 21 -
Pfam 4 169 166 5.5E-14
Coils 104 124 21 -
Coils 175 195 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Vacuolar transport The directed movement of substances into, out of or within a vacuole.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0022600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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