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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0022600 |
| Transcript ID | LotjaGi3g1v0022600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Charged multivesicular body 1; TAIR: AT1G17730.1 vacuolar protein sorting 46.1; Swiss-Prot: sp|Q8LE58|CHM1A_ARATH ESCRT-related protein CHMP1A; TrEMBL-Plants: tr|I3SH56|I3SH56_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0022600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2484805..2485416) extracted from Lotus japonicus Gifu genome v1.2.
GGAGGAAGCGCAGAGAAACTGATGAACCAGATCATGGAACTCAAATTCACCTCAAAATCTCTTCAACGCCAAGCTCGAAA ATGCGAGAAGGAAGAGAAATCGGAGAAGCTCAAGGTCAAGAAAGCAATCGAAAAGGGCAACATGGACGGCGCACGAATCT ACGCCGAGAACGCCATCCGCAAACGCACCGAGCAGATGAACTACCTCCGCCTCTCCTCCCGCCTCGACGCCGTCGTCGCC CGTCTCGACACCCAGGCCAAGATGAACACCATCAGCAAGTCCATGGGGAACATCGTCAAGTCGCTTGAGTCTACTCTTGC TACTGGGAATCTTCAGAAGATGTCTGAGACTATGGATAGCTTTGAGAAGCAGTTTGTTAATATGGAGGTTCAGGCTGAAT TCATGGAGAGTTCCATGGCGGGATCGACTTCGCTGTCTACTCCTGAAGGTGATGTTAACAACCTTATGCAGCAGGTGGCT GATGATTATGGCCTCGAGGTCTCGGTTGGGCTGCCTCAGGCTGCTGCCCACGCGGTTCCGGTTAAGGAAGCTGAAAAGGT TGATGAGGATGATCTTTCCAGGCGCCTCGCGGAGCTTAAGGCCAGAGGTTAA
CDS sequence (LotjaGi3g1v0022600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCAGATCATGGAACTCAAATTCACCTCAAAATCTCTTCAACGCCAAGCTCGAAAATGCGAGAAGGAAGAGAAATC GGAGAAGCTCAAGGTCAAGAAAGCAATCGAAAAGGGCAACATGGACGGCGCACGAATCTACGCCGAGAACGCCATCCGCA AACGCACCGAGCAGATGAACTACCTCCGCCTCTCCTCCCGCCTCGACGCCGTCGTCGCCCGTCTCGACACCCAGGCCAAG ATGAACACCATCAGCAAGTCCATGGGGAACATCGTCAAGTCGCTTGAGTCTACTCTTGCTACTGGGAATCTTCAGAAGAT GTCTGAGACTATGGATAGCTTTGAGAAGCAGTTTGTTAATATGGAGGTTCAGGCTGAATTCATGGAGAGTTCCATGGCGG GATCGACTTCGCTGTCTACTCCTGAAGGTGATGTTAACAACCTTATGCAGCAGGTGGCTGATGATTATGGCCTCGAGGTC TCGGTTGGGCTGCCTCAGGCTGCTGCCCACGCGGTTCCGGTTAAGGAAGCTGAAAAGGTTGATGAGGATGATCTTTCCAG GCGCCTCGCGGAGCTTAAGGCCAGAGGTTAA
Protein sequence (LotjaGi3g1v0022600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQIMELKFTSKSLQRQARKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAK MNTISKSMGNIVKSLESTLATGNLQKMSETMDSFEKQFVNMEVQAEFMESSMAGSTSLSTPEGDVNNLMQQVADDYGLEV SVGLPQAAAHAVPVKEAEKVDEDDLSRRLAELKARG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 195 | 195 | 2.1E-121 | – | |
| PANTHER | 1 | 195 | 195 | 2.1E-121 | – | |
| Coils | 4 | 24 | 21 | - | – | |
| Pfam | 4 | 169 | 166 | 5.5E-14 | ||
| Coils | 104 | 124 | 21 | - | – | |
| Coils | 175 | 195 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi3g1v0022600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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