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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0022700 |
| Transcript ID | LotjaGi3g1v0022700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87; TrEMBL-Plants: tr|K7M941|K7M941_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0022700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2494670..2497466) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAATATTGAGATTCAAAATTCTTCTCTGAATTCTCATGCTCTCACACACCCATCCAGCTGACCCAAAAGCCTTATCT TTTCCAAAAACCATTGTAATGCTCAAAACTGTTAAAGCATAACCAACGAGTGGTTGCGATTGGTTCAAGTGGTATATGTT TGATTGCCCTTAATTAATGTCTCAGGGTTCGAGTTAATCAATGTCGCGGGTTTGAGTATCGTGGATGGAGAAAATCTTGC TGGCAGAGCTAGCACCACCAGAATGCGGATGTTCCGGGCTCGCATATGATTTGCTTCCGGTGGAGGATAATTGTGCTGTG TTAGAAAAATAAAACTGTTAAAGCATGTTATAAATACTAGTCTCTCCTTTTTTTTCCCTATTGCATAATACATGATCAAA GGCCTATTTGTTATACAAATTTCGTGACATAATTGTTCAAGTACCAATATTTGTTTTGTTGTACAAGTTTGTACCTATTG TTCTTCCTATCTATATAATCTTCTCTTCAACAAACACACCCTGCATCAGCAATTCAGTACCAGTCTTCCATTTCATCTGG AGGTACAACCTTTATTCTCTCACTTTCTATTCTCATCAATTTTGCTAAATGTATCTGGTCAAAGGTTTATAGCACAGAAC TTAAGTCTTAAGTTTGCAGTTCACACTAAAACAGTACATAGCATTCAGTTGCTTAATCTGACATAGTCTTTGGTTGTTTT CTTTAGCTTTATCACAAATTTTCATCCAACTGAATTGAAGAAGGAAGTTAAAGCAAGGACTCTCATCCTGTTGGCTCTTT GGGTAGTGTTCTGGTTTTGAAAGCAGCTGGATCTAGACTGAGTAAGCCCTTCAGCTTCAACACTAATAACATGTTTGAAA ATCTTTCTACAATTGATTTTAAAGGCAAAATCAATTCTAGGGAAGAAGCTTCTACGTGGTATCTTCTGAGTGCCAGAATT GATTTTGAGGAAAAATAAGTTGATCCAAACGAGTTTTTACCTAAATATCTTCTGGATATATGTTTATTAATTTTATCTGA TATTTTGTCTTCAACATGAAAGAAGGATCACTTTGTCTCACAACTTTCAATTATATCTCTTTCAGCTGCACTTCATCAAA GATTGTTGTTAACTAGTTATCAATGGATGGTCTGAGCTGGGATGCTTCACAACTTGTTGAGAACATACCAATCTTGTGGA GCACTCAGCCACAAGACCTGGATCAAATAGACTACTCCATGACCAACCCATGTTCAAGTTTTCTTAATTATCAAATGCAA GAGATGATGCAGAAGGAGCAAACAAACCATCTATATCCCATTTCTGAAAAGGTGACTTCAGAGATAATGAGTGGGATGCT AAACACAAATGTGTCACAGAGAGAAGAAGCCATGACTGTGAAATCAGGAGCTGGAACCAGTTGGGAAGAACCTTTCACAT CTCAATCATGCATGTCCCTTTCAATCAGCAATTATGTGACAGATTTCAACATGGCCCACCAGCAAAAACAACAACTTATC AATGGCACACAAAACATCAATGCTAGTACTACTTGCTCTCTAGAATCATCACTTGATTGCTTGCTTTCAACCACTAATAG CAACAACACTGACACATGTGTCCAAGATGATGGCATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTG CAGTTTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCTAGAAACAAAGACATGCAGTATCCTCCAGTCAATGAACTA GATGAAATCATATCTCAATGTCCCTCTGATCAACATGTCAGTCAAGGTACTAATATCATAGATTCTAATGTTCATTGCAA AAAAAGGAACAATGAGCTTATCAAAATTGCAGCAAGTGAACCCTGCTTCAGCATTACTGAAAATTGTGGCGGTTTCAAGC TTATCTCAGAGAATCCACCACAATCCAAGAAACCCAGATTTGATAAGTGTCCTGGCTCATCAAACATAAATTTTCAGCAG CCAAATTCTAATTCTGTGTCACATTCCATTGAAGAACCTGATCCAGAGGCCTTAGCACAAATGAAGGAAATGATATATAG AGCTGCAGCTTTTAGGCCAGTGAATTTGGCTGAGGAAGTGGTGGAAATGCCTAAAAGGAAGAATGTGAGAGTATCAACTG ATCCACAAACTGTGGCTGCAAGGCAGAGGAGGGAGAGAATAAGTGAGAGGATTAGGGCTTTGCAGAAGATTGTGCCTGGT GGGAGCAAGATGGACACTGCATCGATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCTCAAGTCAAAGCATT AGAGAATCTAGGGAATAAGCTTGACTCAATGAAGTGTCCTCCTACTAGCATAGCCTTCTCTTTCAACCCTTCTTTTCCCA TGCAAACCCATTTCCCTGTCCAAAACCCTAGAGGCCACATCCAATAGCAAAATGATTTGTGGACATCCGCATAATGCAGA CACTCCGCAGACACCTAAAGTGAGAAAGGAAGAGAAGAAAGAGAAGTAATAGTGATTTATGTTGTGATGTGAAAAGAAGA GAGAAATAGTGAAAAAATATGAGAAGTATGTTAGGTGTCTAATTGTTTAGATGTCTAAGTATCATTAGTGCATCCAATGC TCCTGGAGTTGAAATAATTATTATCCATATCATGGAAGAACAGATGTAAAATGGGGTCAAATAACCCTTCATACCCTCTA ATTGTTTCATCTAATGACAATTATTGACATATCCTCATGTTGTAGCCAGAGTTTCAATGTTATTCATTGTAGACCAG
CDS sequence (LotjaGi3g1v0022700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGTCTGAGCTGGGATGCTTCACAACTTGTTGAGAACATACCAATCTTGTGGAGCACTCAGCCACAAGACCTGGA TCAAATAGACTACTCCATGACCAACCCATGTTCAAGTTTTCTTAATTATCAAATGCAAGAGATGATGCAGAAGGAGCAAA CAAACCATCTATATCCCATTTCTGAAAAGGTGACTTCAGAGATAATGAGTGGGATGCTAAACACAAATGTGTCACAGAGA GAAGAAGCCATGACTGTGAAATCAGGAGCTGGAACCAGTTGGGAAGAACCTTTCACATCTCAATCATGCATGTCCCTTTC AATCAGCAATTATGTGACAGATTTCAACATGGCCCACCAGCAAAAACAACAACTTATCAATGGCACACAAAACATCAATG CTAGTACTACTTGCTCTCTAGAATCATCACTTGATTGCTTGCTTTCAACCACTAATAGCAACAACACTGACACATGTGTC CAAGATGATGGCATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTGCAGTTTCCTCTGGTGAATCTGA GAGCAATGCTTCCAATGCTAGAAACAAAGACATGCAGTATCCTCCAGTCAATGAACTAGATGAAATCATATCTCAATGTC CCTCTGATCAACATGTCAGTCAAGGTACTAATATCATAGATTCTAATGTTCATTGCAAAAAAAGGAACAATGAGCTTATC AAAATTGCAGCAAGTGAACCCTGCTTCAGCATTACTGAAAATTGTGGCGGTTTCAAGCTTATCTCAGAGAATCCACCACA ATCCAAGAAACCCAGATTTGATAAGTGTCCTGGCTCATCAAACATAAATTTTCAGCAGCCAAATTCTAATTCTGTGTCAC ATTCCATTGAAGAACCTGATCCAGAGGCCTTAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTG AATTTGGCTGAGGAAGTGGTGGAAATGCCTAAAAGGAAGAATGTGAGAGTATCAACTGATCCACAAACTGTGGCTGCAAG GCAGAGGAGGGAGAGAATAAGTGAGAGGATTAGGGCTTTGCAGAAGATTGTGCCTGGTGGGAGCAAGATGGACACTGCAT CGATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCTCAAGTCAAAGCATTAGAGAATCTAGGGAATAAGCTT GACTCAATGAAGTGTCCTCCTACTAGCATAGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACCCATTTCCCTGTCCA AAACCCTAGAGGCCACATCCAATAG
Protein sequence (LotjaGi3g1v0022700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGLSWDASQLVENIPILWSTQPQDLDQIDYSMTNPCSSFLNYQMQEMMQKEQTNHLYPISEKVTSEIMSGMLNTNVSQR EEAMTVKSGAGTSWEEPFTSQSCMSLSISNYVTDFNMAHQQKQQLINGTQNINASTTCSLESSLDCLLSTTNSNNTDTCV QDDGISMILSDCRNLWNFSAVSSGESESNASNARNKDMQYPPVNELDEIISQCPSDQHVSQGTNIIDSNVHCKKRNNELI KIAASEPCFSITENCGGFKLISENPPQSKKPRFDKCPGSSNINFQQPNSNSVSHSIEEPDPEALAQMKEMIYRAAAFRPV NLAEEVVEMPKRKNVRVSTDPQTVAARQRRERISERIRALQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKL DSMKCPPTSIAFSFNPSFPMQTHFPVQNPRGHIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 94 | 433 | 340 | 1.3E-127 | – | |
| PANTHER | 94 | 433 | 340 | 1.3E-127 | – | |
| ProSiteProfiles | 337 | 386 | 50 | 15.32 | ||
| Gene3D | 340 | 398 | 59 | 2.8E-11 | ||
| SUPERFAMILY | 342 | 400 | 59 | 6.54E-14 | ||
| SMART | 343 | 392 | 50 | 5.0E-13 | ||
| Pfam | 347 | 386 | 40 | 2.4E-6 | ||
| CDD | 359 | 391 | 33 | 8.56501E-5 | ||
| Coils | 376 | 396 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0022700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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