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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0026500 |
| Transcript ID | LotjaGi3g1v0026500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/RNI superfamily protein; TAIR: AT1G60400.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q1PFI4|FB69_ARATH F-box protein At1g60400; TrEMBL-Plants: tr|A0A0L9TJD0|A0A0L9TJD0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0026500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2902997..2906276) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGGGGAAAATAAAAGACAAGCAATAGGTGAATGATGCCAATGCTTGGAAACATTTTTCTTTCCCCTCCTGGTTGAAT CAAGCATGGAGGAGAGAAGAAGAAAAAAGCTTTAAAAACCAGAGAGAGAGAGAGAAAACCCAATTTCAAAGAAACACTTT AATCGCCGCCATTGCTTGCTTCCAACCACTGAGCAATTGGACTCTTGGAAGCTGAAAAGAGAGTCTCTCCACTCTCTTCC CACAATTCCCACCACAGGGAATCTGAAAAGGGTGTCTCAAAGCTGCTGAAACCTTTCAATTTTCCCAGGTGTGTTTTCTA GCTTTCAATTTTGTTTTTCAACTACCCATTTTTGTTTTCATTGTTATTTCATCGTTTTGATTGCGTTTGGGTATACCCTT TTGTGGATTTTGATTATTGGATAGGGAAAGTTGTCAACTTGATTGTTTGATATTGGTTTGGGGGTGAAATTTTGGGGACA AGGTTTAGTTTTTTATGTGAATTTGGAGTCAAGTTTGGGGCTTTGTGTGTTTTGATTTCTGGGGTTCTGTTTGTTCATCT AGAATTCCAGTATCAACATAGGGTGAGGAAAATTGGGATTGAGCTGAAATTTTCAATCCTAAAGTTTAGAGGTGGATTGG AACCTGTGTAGGGAGATGCTTGATGAGCTTTTCTACGAGTAGGACGATAATCAATGAATAGTGGTGATTGGAGTTACAGT TTTCATGTTTTTGATATCACAGGCTGTTTTCAAAGAGATACATTAGAGCTTATATTGATTTCCAGTTCCTCTATTTGAGT GTTCTGGTATGAAATTTCAATTGTTTCTTACATGGATAAGTATAGCATTTTTTACCTTTGCATACTGATTTGTTTGTTAA TGTATTTTGTGTTTTCATATTTAGTCAGATGGTGGGAATGAGTGACACCTTCAACTCCACCGATTCAATTGAATGCGGTG AAACTGGGATGCTGAAAACTGGTTTTGAGGGATCTGGTCCTCCGATGAAGAAGTCTAAGTTACAAGCTTCGACACCTCAA AATATAGAGAATAGTGAAGCAGCAGAAAGCCAGGACAGATTTGATAATCTACCTGAGAGTGTTGTCCTTCATATTTTGTC GCTTATGGAGACAAAGGATGCAATTCGAACATGTGTTTTATCCAAACGGTGGAGGTATCTTTGGATGTCAGTTCCATGTC TAAACTTCAACAGCAAGTCTTTCCCCCGGTTGGTTGAATTCAAGAGATTTGTGTTGTGGGTACTATCCCACCGAGATTCT TCGTGCGTCAAAGTTCTTATTTACTACCGCTTTGGGGTAGATTATGCTACAGATCAATATCTATTGGATAAGGTTATTGA ATATGTAGCATTACATGGTGTTGAAGAAATCAGAATCAACCTTAAGGCAAAAACCTCTGGCAGCCCACCTGTTAAACTCC CATTGTCTTTATTTAATTGCAAATCCTTGAACAAGCTTGAGTTAAAAGGTTGTCATCCTACAAATGTCTCATCACCTCAT GGTTGCAGATCAGTGGAAATGCCGCATTCGGAACAACTCTCGATGCATCCTGCAACTGCAGATAATGCAAATTCACTTGC CAGTTTACCAGAGCTTTTTGGTTTTACAACATTGACAACTTTGCATCTCAACAGCTTGACTCTTTGTTATACAGGAAATG AAGTTCTGGACCCATTTGTTAACTGTGTCAATTTAAAGGATCTACACTTGAGTGAAATGAGCTTTAAGTCGCAGCTGATC CCTAGGGATTTTGTGATATCCGCACCCCGACTCAGCAACTTGACCCTAATGTGCAACCGTTTTAAATGCAAACTAGTAGT TAATGCACCACAGCTGATCAATTTCAGCTACTTATATTCTACTCCTCGTGCCTTCTTTGAGTTTAGTATTCCTTCTCTGG ATGGCTTGATCATTGATATCTATGAACTACAAGATCGATGGGGAAATTCTCTCCAGAATATAGTGAAGACTTCACATGGT TTGATCAATATGTGCCGGGGACATCATGATATTGGACTATCCTTCCGTACAATTGAGGTATAAAGAAATTCTTTGTCGTT GTGTGTGTTTATCTATATGCGCATTGTCTGTGTGTGTATCGGAGAGACCGTGTCTGTGTGTGTAGTTTGGTTGGCTTAAT GCTAAAAGGTTTCTAATGTCTTTGTTTACAGGATACCTGTGTACATGCTGCCATTCTAAAGCAAGAACGTTTGTCTCTTA GTAAGTTGAAGTCACTGAACTTAGGAGTGGGTTTAACATATAAAATCTTCATTAACAACCTTGAACATATAACTGCATAC TTCCGTCGTTGCTCTCAGCATGCTGCAGACTTTGAGATTGTCACAGTTTAGAAGGTATTGATAGATCCATGTCATCTGTT TACCTTTTATTGCAATAATGATAAGTTTGTGGTGCTTATTTTTTATAATTATTTTATTTACTTCGTAGTAGTTAATCATA TATCACTCTGAAATAAAAATTGGTTGAATGATTGATCGAGTCTGGAATCAGTTGCTAATTCTCAGCTTAATGATACGATA GTACATACACTTTGAAGCATTGTGACAGATGATAACTAAAAGGATTTAAACCTGTGCAAATCAGTTAAACCTTTATTTAT TATTGCTTTTAGGGTGTAGGCCAATATCATTATTGAATGTCTATGTTCTATTTCTGTTCTGGTTGTTTTGAATGAGCATC TATGGTATTATATTTTCTTCTGCATTATCAGTAATCATTAAACCTAATATAGTTTTCCCCTTTTGTTTAGATGTTGAAGA ATACTACTCTACACAGGAGGAGGTTTTGGCTTATGCTTGCTTGGAAGTTTAATCCAACACTGAGTCCTTTCATGCTGAAC AAGGATGAGTACTTTGTTATTTTGAACAGGAAACTATAGGGATATACACCAATCTTTGGCCAGTTATAGAAATTAGGCCA CAATGAAATAGAGATTTTATTACTTTTTGAGGAAAAAATCCTGTTTATCTTGGTGCAAATTTTCAGTAAAATTAATTTGA AGTTATAGATGTTTAAGTATTTCTTTTTGAATTTTTTTTTGTGGTCTAAGTTTTTCTTAAATTGAATGGTGGCAAGAAGA TGGCTACCATTTACTTGGACTGTTAGCTACATACCAGGAAGTAGAAGGATGAACAACCGTTCCAAGTGGTTTAACTGATT TCTTCCATGGGGTGTTTTCTGTTTGCACCTCCGTTTTACTCATTGCACCACCAAAGATAATTTTCTGAAATTAATTTCCA
CDS sequence (LotjaGi3g1v0026500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGAATGAGTGACACCTTCAACTCCACCGATTCAATTGAATGCGGTGAAACTGGGATGCTGAAAACTGGTTTTGA GGGATCTGGTCCTCCGATGAAGAAGTCTAAGTTACAAGCTTCGACACCTCAAAATATAGAGAATAGTGAAGCAGCAGAAA GCCAGGACAGATTTGATAATCTACCTGAGAGTGTTGTCCTTCATATTTTGTCGCTTATGGAGACAAAGGATGCAATTCGA ACATGTGTTTTATCCAAACGGTGGAGGTATCTTTGGATGTCAGTTCCATGTCTAAACTTCAACAGCAAGTCTTTCCCCCG GTTGGTTGAATTCAAGAGATTTGTGTTGTGGGTACTATCCCACCGAGATTCTTCGTGCGTCAAAGTTCTTATTTACTACC GCTTTGGGGTAGATTATGCTACAGATCAATATCTATTGGATAAGGTTATTGAATATGTAGCATTACATGGTGTTGAAGAA ATCAGAATCAACCTTAAGGCAAAAACCTCTGGCAGCCCACCTGTTAAACTCCCATTGTCTTTATTTAATTGCAAATCCTT GAACAAGCTTGAGTTAAAAGGTTGTCATCCTACAAATGTCTCATCACCTCATGGTTGCAGATCAGTGGAAATGCCGCATT CGGAACAACTCTCGATGCATCCTGCAACTGCAGATAATGCAAATTCACTTGCCAGTTTACCAGAGCTTTTTGGTTTTACA ACATTGACAACTTTGCATCTCAACAGCTTGACTCTTTGTTATACAGGAAATGAAGTTCTGGACCCATTTGTTAACTGTGT CAATTTAAAGGATCTACACTTGAGTGAAATGAGCTTTAAGTCGCAGCTGATCCCTAGGGATTTTGTGATATCCGCACCCC GACTCAGCAACTTGACCCTAATGTGCAACCGTTTTAAATGCAAACTAGTAGTTAATGCACCACAGCTGATCAATTTCAGC TACTTATATTCTACTCCTCGTGCCTTCTTTGAGTTTAGTATTCCTTCTCTGGATGGCTTGATCATTGATATCTATGAACT ACAAGATCGATGGGGAAATTCTCTCCAGAATATAGTGAAGACTTCACATGGTTTGATCAATATGTGCCGGGGACATCATG ATATTGGACTATCCTTCCGTACAATTGAGGATACCTGTGTACATGCTGCCATTCTAAAGCAAGAACGTTTGTCTCTTAGT AAGTTGAAGTCACTGAACTTAGGAGTGGGTTTAACATATAAAATCTTCATTAACAACCTTGAACATATAACTGCATACTT CCGTCGTTGCTCTCAGCATGCTGCAGACTTTGAGATTGTCACAGTTTAG
Protein sequence (LotjaGi3g1v0026500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGMSDTFNSTDSIECGETGMLKTGFEGSGPPMKKSKLQASTPQNIENSEAAESQDRFDNLPESVVLHILSLMETKDAIR TCVLSKRWRYLWMSVPCLNFNSKSFPRLVEFKRFVLWVLSHRDSSCVKVLIYYRFGVDYATDQYLLDKVIEYVALHGVEE IRINLKAKTSGSPPVKLPLSLFNCKSLNKLELKGCHPTNVSSPHGCRSVEMPHSEQLSMHPATADNANSLASLPELFGFT TLTTLHLNSLTLCYTGNEVLDPFVNCVNLKDLHLSEMSFKSQLIPRDFVISAPRLSNLTLMCNRFKCKLVVNAPQLINFS YLYSTPRAFFEFSIPSLDGLIIDIYELQDRWGNSLQNIVKTSHGLINMCRGHHDIGLSFRTIEDTCVHAAILKQERLSLS KLKSLNLGVGLTYKIFINNLEHITAYFRRCSQHAADFEIVTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 25 | 56 | 32 | - | – | |
| MobiDBLite | 35 | 51 | 17 | - | – | |
| Gene3D | 43 | 98 | 56 | 1.5E-6 | – | |
| PANTHER | 44 | 441 | 398 | 3.9E-163 | – | |
| PANTHER | 44 | 441 | 398 | 3.9E-163 | – | |
| SUPERFAMILY | 54 | 124 | 71 | 1.31E-12 | ||
| ProSiteProfiles | 55 | 108 | 54 | 9.18 | ||
| Pfam | 57 | 95 | 39 | 2.4E-6 | ||
| SMART | 61 | 100 | 40 | 4.1E-4 | ||
| Gene3D | 157 | 328 | 172 | 3.1E-11 | ||
| SUPERFAMILY | 175 | 319 | 145 | 2.82E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0026500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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