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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0027200 |
| Transcript ID | LotjaGi3g1v0027200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epidermal patterning factor-like protein; TAIR: AT3G13898.1 EPIDERMAL PATTERNING FACTOR-like protein; Swiss-Prot: sp|C4B8C4|EPFL3_ARATH EPIDERMAL PATTERNING FACTOR-like protein 3; TrEMBL-Plants: tr|V7BZH2|V7BZH2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0027200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:2954511..2956778) extracted from Lotus japonicus Gifu genome v1.2.
CTGGCAGTCATTGATTGTGAAGAAATATGCAGCAGAAGATGAAGGACACCCAAATTCAATGCCATCCAAATGAATGGCTA AGATTGGACATGACTCATCTGTTCCCCAACAACCAAATTGCATAAAGTTGAGCCTAGTACCTCATTTAATCCCTTAACAA ACTCATTAAATTTTCAGTTTTCTTTATCGTACAAAGAGAGAGAGAGAGCTGCATGTATCAGAAGCTGATGCTCTTTTTTT TCTCCACTTCATATAACTGGCACTGTGCCATATCGATCAATGAAAGAAAGCAGCATCAGTAAAAGACAACAAAGGCTGGC TCTGCAGTCTAGGTGTCAAAGCTATCAGATAATTATAGGCTTTGAAGGTGTTTTCAGACCCAAAATGGGTGCTGTTATTC TGCACTTTACACCACCATATATAGTACTACCCTTTTATATTAATTATATTGATGAGTGTGTATGTGTGTGTGTGTGTGTG TGAGAGAGAGAGAGAGAGAGGGGTTTGGCTTGTATTGAAAGGTAAGCAATCTGCAATCCAAGGTTAGAGGCAGAAGGACA GTGGAAAATAGGCTATAGTCTTAGGAGGAAGGTGAACCTTGTTGGATCACTTGTTTACTGTTCACAAGAAACCAGAATCA CTTGCTTGCAAAGCAAAATCTCTTTGGGAATTGCAAGCTCCTGTGGTAGTAGTAGTTGTAGCCTTTTCTCTCCTCCCCTT TTTATATGCCAGAATGAATTCAAATTCAACCATCATCATCATGTCTTGCTTCTTCTTGTGAATTAGGGAAGATTGTTCAT ATCATTCTCATAATCATTACATTCATCATTTTGTGCTTGCTTTTGAAGAAGGAAAAAAAAATGAAAGGAGGAAGATTGTT CTGTTTTATGGTTGCTCTGCAAATAATGAGTTGTTGTGTCTCTGTAACAAGCAGACCCTTTTCTCCAACTGATGATCTGT CCCATCCTGCAGGTTAGTTAGTTAACCATTTTGAAGACATGACTTGTTTCTATAACTGTTAAACTCCTTACACTTTAATT ATCTTTGTAATTATGACTTTATCATATTCAATTATTCATATTCAAACATCTTATCCTTTAAAATTGCATGACTTTTTGAA AGATTTTCATCACATTGCTCTGAGGCTATTTTAACCATTTTCCCCTTATTTTATCTCTGCTTCTCATCAGGCCCAAAACA GGTACCAGCTCCAGAGTCTTCACCACCTTATACTATAGAGTCAGAAAAGGTGTGTGTGTACTCTCCAATCCTGTTAATTT TGTAGCTGGGTGGGTTGTTCTGATCGAATTTTCACATATTCACACAAAGTTTCTTTTCTATTAGGATATTTGAAAATCTC TCTACTATTAGAATTGATTCATTTAAAATTAATTTTAAGGAAAAAATTGTGTGAGTAGCTTCATAGTATAAGAATTGAGA AACTCAGAAAGTTACTCTAAAAAACTTCTTTCTAGAATTGATTCCGACTTTAAAATCAATTATAGAAAAAATTTCAAATA TGCACTATCTTTCACTTCACTTCTTATCTCTCTCATGGTTGAGGTGAATTTTGGGTGTCAATCAATGTTTTCCCTTTCTG CTATCATAGTTAATTAACAAATTAAATTAACTGAGTATTGACTACTACCTTGTCTATTATTTTCTTTTTGTTAAAGGGGT TAATGGTTAGAGAGAAGATGACAGAGAGAATGAAAGAAGAAGCATATTATGATAGAAGAATAGGGTCTAGTCCACCAAGC TGTGAGCACAAGTGTTATGGTTGCACTCCTTGTGAAGCCATTCAAGTACCAAGCACAAGCAGAAGCAGCAGTAGAAGGAG GCACAGTCATTTGGGGATCCAGTATGCAAACTATGAGCCTGAGAGCTGGAAATGCAAGTGTGGTCCTTCCTTTTACAGCC CCTGAATGTTAATTGTCCATACCCATTTAATACATTATATATTATATAAGTCCAATCTATCTTCTATCTGATTAATTCTC AGGTTCGATCATATATATTAATATTATTGTATTGTATCTGTCCCCTTGTCGTACAAAACCTCAAAATTCAAAGGAATTTA ATTATTTACTAGATAATGATCAAGTGATATAGTTGGATAGGAATGACTTAGTTGTGTTTATTACTAATGGAACTTCGATG GTGCCTACAAAAGTTGATGATGATGAAGAAGAAAGTGATCATGAGAATTTTGATTTAATTCGAAGACAAATAAAGTAATG ATATAGTGAGAAAAATACTAATAATGAC
CDS sequence (LotjaGi3g1v0027200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAGGAAGATTGTTCTGTTTTATGGTTGCTCTGCAAATAATGAGTTGTTGTGTCTCTGTAACAAGCAGACCCTT TTCTCCAACTGATGATCTGTCCCATCCTGCAGGCCCAAAACAGGTACCAGCTCCAGAGTCTTCACCACCTTATACTATAG AGTCAGAAAAGGGGTTAATGGTTAGAGAGAAGATGACAGAGAGAATGAAAGAAGAAGCATATTATGATAGAAGAATAGGG TCTAGTCCACCAAGCTGTGAGCACAAGTGTTATGGTTGCACTCCTTGTGAAGCCATTCAAGTACCAAGCACAAGCAGAAG CAGCAGTAGAAGGAGGCACAGTCATTTGGGGATCCAGTATGCAAACTATGAGCCTGAGAGCTGGAAATGCAAGTGTGGTC CTTCCTTTTACAGCCCCTGA
Protein sequence (LotjaGi3g1v0027200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGGRLFCFMVALQIMSCCVSVTSRPFSPTDDLSHPAGPKQVPAPESSPPYTIESEKGLMVREKMTERMKEEAYYDRRIG SSPPSCEHKCYGCTPCEAIQVPSTSRSSSRRRHSHLGIQYANYEPESWKCKCGPSFYSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 8 | 139 | 132 | 1.3E-37 | – | |
| PANTHER | 8 | 139 | 132 | 1.3E-37 | ||
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 139 | 118 | - | – | |
| MobiDBLite | 30 | 56 | 27 | - | – | |
| Pfam | 78 | 139 | 62 | 5.0E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi3g1v0027200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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