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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0028800 |
| Transcript ID | LotjaGi3g1v0028800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit tim23; TAIR: AT1G72750.1 translocase inner membrane subunit 23-2; Swiss-Prot: sp|Q38820|TI232_ARATH Mitochondrial import inner membrane translocase subunit TIM23-2; TrEMBL-Plants: tr|I1M595|I1M595_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0028800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3174948..3179187) extracted from Lotus japonicus Gifu genome v1.2.
AAACCCGGTTCACAGAGAAAACCCACTCCCCAAAAAGTTCCTAGAACGTTCTTCCCCAATTCAAAATCTCAGTTCCTCTC CCAAATCCCCAAAACCCTAACCCTAGCGTCTGGAAGCCTCTCCAATGGCGTACCAGACCCCAGATCACGAATCAAACTCC GATTCCAACACCCCAACCCGCCTCTACAACCCCTACAAGGATCTCGAGGTCCCCATTCGAAACCTCTACCAGCTCCCAAC CTCCCCTGAGTACCTCTTCGTCGAGGAAGCTCGCCGGAAGCGTCGCTCATGGGGCGAGAATCTCACCTTCTACACCGGCT GCGGTTACCTCGCCGGCGCTGTTGGCGGCGCCGGCGTCGGATTCGTTGAAGGCGTAAAATCGTTCGAGACTGGGGATTCC GTCAAGCTCCGGGTTAATAGAATTCTCAACTCGTCTGGCCATGCGGGTCGGTCGTGGGGGAACCGGTTGGGCGTGATCGG TTTGCTTTATGCTGGGATTGAGAGCGGGATTGAGGCTGCGAGAGATACCGATGATGTGTGGAATAGTGTCGCTGCGGGGC TTGGTACCGGCGCGTTGTATCGGGCGGCGAGAGGGGTGAGATCGGCTGCTGTCGCGGGTGCTGTTGGCGGAGTTGTGGTT GGAGTGGCGGTCACGGCGAAGCAGGCGTTGAAACGTTATGTGCCGATATGATCAGAATTCAGAACTTCATCAGTTTGTGT GAGGTCGTAATTTTATTATTTTTTTTCGGTTACTACTATCAATTTTGAGAATTATTATACCAGTTTGTGGCAGGCAGTGC TGCCGTTGTGAACAATTGGCTTAATGCATATTTTTTCAGCTTGATAATGGCTAACCTTGCTAATGTAATTCGTCGAATCA TCTTGAATGAATAATTGGGGCGGCATTAATGCTGGATACAGTATAAAAGAATGGTATTCCTCTGTCAAAGAAATTGTGAT AAATGATATGTTAGAAGCTGAATGTCTAGTTAACTTATGTGCATTATGAATGTGTAGATTATAGTTCAATTTCTGATATT AGTTTAAATGCGCCAGTCAGTATTTCTGGTTGGGTGATAAGGCTCAGCCTGAAATTTTGTATGATGGGATCTTTTCTGGT GGAATATCATTAAGATTTTTTGTCATGCAAGTTTGGATATGTTGTGTTATGCATGGGTTTTGCGTAATATATTCATGTTT TTGTCCAATTGGTGTCTGTGTTGTCAGTGCCAGTTCCTGGCTCGTCGCGGCCAGCCCCGAACTGAGATAGCGGGGTCCCG GAAAGTGGGATGGCTGGGATAGTGAATTTTTGTCTATATTTTGTATAATTTATACCATATATGTATACATACTAAATCAA TGATAAATATTACTTGAAATTCATAACATATGCATACTTTCATTGTAGCAATTAAAGCCATTGGTCTTGAACAGAAGTCA TACAATGAAAAACAAAAACATACAGGATACTTAACTTCTTAAAGACTAAAGTCATAGACTCATAGGTCATGACTTTTAGT CATACAACTAAACTAAACATCATCAAAAGCAAGGTAAAAATTGAAGAGGAGAGGAGAGGAAGAATGAAAACAGAACAGAG GAGATGAGAGCACCAGAACCCACCTTACCAGAAGCTCGCGGTGGTTGCCGGCTGGTTCTGGTGCTTCAGAGAGCAGCAGT GATGAGAGGGAAGAAGAGAGGGAATGGGTCAGTGTGAGGGGAATGGGTCGCAGAGAGGGAAGAATCAATATTCTAGGGGT TTTTTTTTTCGTTGGGAAAACTTGGAAATACCCCTAAATATAACAACCCCCAACATTTAAATAGAGGGTATTTTAGGAAA ATGGGGATATAGGTCAAATGAATCACTGTTGTGCCCAAATTGTGCAGGATAGGCCGTGATATCGGCCGCGATCCAGCCTC GAGAGTTATCTGGGCTGGGATGGGAACCCGGGATCCTGCTGGGATTGACAACCTAGCTTGGTATACTGTGGGAGACTAGT GAAAAATGTCATGTTAAAATTTTTATATGAACAATTTTGCAATAGCTACTTGCGTATTGTCTGTGTTGTAAATCATGTAT TCAAGTCATTTCTCTTCAGCTGAAAGAAATAATTTTTGTCTGTCTATACAACCACTACTTCCTCCAAGGAACAGTTTTTC AATAAAAAGAATATTTGGACACATAACCTGGTTTGCAGGACTTTAAGTAGCCAGTGGATGATATGATATTTTACTCGAAT TTGGTCACCTACAGATTTCACCTTCCCATCTCTGTAGTTTAGCTTCCATAGATATCGGATATAATTTCCAATCATATCAT GTACTAACTTTTTATGGTGCAATGAATACATGAGCAAGCTGCCACTGTTATAACAGTCTAAATTATAATTCAATCTATTA CCCATAATCGATGCCTTTGTTGTTAGTTGTAGATTTTTCTACTAAACCATAAAAGTTAACCTATTTGTTTAGCTTCTCTA TTTACAACTATTCAGCACTTCTTGCATGTGATGTGATGTGTTGTTTATATCTAGATAGCTAGCCACATTTATATTCTTAT ATTGTGGAGTAGCACTTGGGGAGTTTTTCTTATATGTATGTTGTTATATGTTATACATGCAACCCCATTTTGTTATGTGC CTTTTTGTTAAATTATAAGATGTGGCTTCTCCAACATAGTAAAAGTTTTAGCATGGCCCTGAAAATTTGAACTTTCAAAA AATTAGTAAAGGAAGAACATGTATTGTTTTTTGCTTGAATTCATGCAGCACTTTGTTTTAAGCTGTTAATGTGTTGTAAA TCATGTGTTCATGTCATTTCTGTTTTAGTTGGAAGAAGATAGTTGTTCTCTATATATTATAATAAAGCATATGTTAATAA TGTTATTGTTCTCTTGTCTGACTGCTTGAAGCTAAGCTATCAACTGGTAGATTTTGCATGTGTGAATCAACTGAACCACT ACTTGCTCCAAGGAACAGTCAAAAGAATGTTTGCACACACATAATTGTGTTTTGCAGGACTTTATTAGCCAATTGATTTG ATATTTTACTAGAATTTGGTCACCTTCAGATTTTTTCTTTTCATCTTTGGGTTTTTGGTTTCATAGATAATCGGTTATAG ATTCCAATCATACTTATGGTCCAATGAAGACTTGAACAAGTTGCTATTTGCTTTTTCTGTTGTTGTTAGTTGTAGACTTT TTCTACTCAAAGCAAAGCGGTAAACCTATTCATTGAACTTCTCTGTGTACAATTACTCGGCACTTACTTGTCCTGTGAGT GTTGTTTACTAGCTAGTAAACTGGAAGCTTGGTTGGGATGTGGTTTTTGTGCCTCATAATGGTCCTTAGATACATTCAAA ATATTTTAGTATCACTTTATCCTTGGAAATTGGATGCCTCAATTACAATCAGGATTGTTAGGATCCAATATGAAATGCAG AGAAAGATGAAATTTACCTGTAACTTAATCAATCCATGTGATATTGATAATATTATAGGCATTGTCCCACCATCTATGAT AATTGTTCTTGTTTAGATTTGTTTGAAAGGAAAGTAGAGAAGCTTTTGTTGTGTAAATGCAGTTGTGTTTATCTGTTCAT TCGCTATGGCTTGTAATTTCTTCTTTGCTGGCCAATGACCCATCCGTGGCGAAGACTTGCAATCAAGTCCGCTCATACCA TATGCTGTCGCACTGAATGCCTTTGTGGAAAACAAACTGCAAGTGAAGTAATACTCTTACTGTTTTTTTATCTCTCTCGT TGTGAGTGATTGAATACTTCAAAGCAAGTGGTAAAGAATCGAATACTAATTAATTCCTGTGAATGAAAAGATCTTTTGAA GAGGCGATATTATTGTATTTTTTTTTTTTTTGCTTTGGAAGATAAATTGTACCCTTTAAGGATTGATCCTTGGACTGTCT CATCCAAACCCATTGTCCCAAAACTCTTACTATATTGAAGAGACGATATCATTGTGTACTCATAAAGTTGTGAAGAAAAA ATAAATGGAAATTACACGTATAGTTCCTGTTTATCTACCGTTCTTGTCTCCGAAGGATCAAGTGGTAAGAGCTGGGGACA TATGAGTAGGGAATGAGAAGGTCCAGGATCAATTCTTAAAGGTGTGGGTGTAATTTACATTTTTCGATGTAAAAAAAACC TACGGTTCTTGAAAGTTGATTTATGTTTTTGAAAACTAAAAAATCATCATAAATTGTTTTTTAAGATTGAAATGGCAAAA
CDS sequence (LotjaGi3g1v0028800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTACCAGACCCCAGATCACGAATCAAACTCCGATTCCAACACCCCAACCCGCCTCTACAACCCCTACAAGGATCT CGAGGTCCCCATTCGAAACCTCTACCAGCTCCCAACCTCCCCTGAGTACCTCTTCGTCGAGGAAGCTCGCCGGAAGCGTC GCTCATGGGGCGAGAATCTCACCTTCTACACCGGCTGCGGTTACCTCGCCGGCGCTGTTGGCGGCGCCGGCGTCGGATTC GTTGAAGGCGTAAAATCGTTCGAGACTGGGGATTCCGTCAAGCTCCGGGTTAATAGAATTCTCAACTCGTCTGGCCATGC GGGTCGGTCGTGGGGGAACCGGTTGGGCGTGATCGGTTTGCTTTATGCTGGGATTGAGAGCGGGATTGAGGCTGCGAGAG ATACCGATGATGTGTGGAATAGTGTCGCTGCGGGGCTTGGTACCGGCGCGTTGTATCGGGCGGCGAGAGGGGTGAGATCG GCTGCTGTCGCGGGTGCTGTTGGCGGAGTTGTGGTTGGAGTGGCGGTCACGGCGAAGCAGGCGTTGAAACGTTATGTGCC GATATGA
Protein sequence (LotjaGi3g1v0028800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYQTPDHESNSDSNTPTRLYNPYKDLEVPIRNLYQLPTSPEYLFVEEARRKRRSWGENLTFYTGCGYLAGAVGGAGVGF VEGVKSFETGDSVKLRVNRILNSSGHAGRSWGNRLGVIGLLYAGIESGIEAARDTDDVWNSVAAGLGTGALYRAARGVRS AAVAGAVGGVVVGVAVTAKQALKRYVPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 188 | 188 | 8.3E-87 | – | |
| Phobius | 1 | 59 | 59 | - | – | |
| PANTHER | 1 | 188 | 188 | 8.3E-87 | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 60 | 81 | 22 | - | – | |
| Pfam | 63 | 171 | 109 | 5.9E-27 | – | |
| Phobius | 82 | 160 | 79 | - | – | |
| TMHMM | 157 | 176 | 20 | - | – | |
| Phobius | 161 | 178 | 18 | - | – | |
| Phobius | 179 | 188 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0028800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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