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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0029100 |
| Transcript ID | LotjaGi3g1v0029100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Threonine synthase; TAIR: AT4G29840.1 Pyridoxal-5'-phosphate-dependent enzyme family protein; Swiss-Prot: sp|Q9S7B5|THRC1_ARATH Threonine synthase 1, chloroplastic; TrEMBL-Plants: tr|L0EK99|L0EK99_LENCU Threonine synthase; Found in the gene: LotjaGi3g1v0029100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3193778..3199062) extracted from Lotus japonicus Gifu genome v1.2.
TGACCATTTATTTATGAGTAAGACATGACATAGATCTATAATAATTGGACTATTGGAGAGGGAGAGAGAGAGTGTGGGAG TTGCGGCGGCTCGCACTGCAACTAAATAAAAAGCTGATTCATCCATTCATCTTCACTTTACCAATCTCTCTCAATGGCTT CTTCTTCCTCAACCCTCTTTCAATCCTCCTCGTTTTTTTCCGGCGGTTTTCCACTGCCACCTCCCCAACGCAAACGTAAA ACCCATTTCCACCCAATCAAAGCCCAATCTCAACAACAAAACACCGCCACCAACAACAACTCACCGCCACAACCACCACC ACCTTCCTCCTCCAACATCCGCGACGAAGCTCGCCGCAAGAAAATCTCCACCGGCGACCGCCACCTCTTCTCCGCCAAAT ACGTCCCCTTCAACGCCGACCCATCCTCCACCGAATCCTACTCCCTCGACGAGGTCGTCTACCGCTCCCAATCCGGCGGC CTCCTCGACGTCCAGCACGACATCGCCGCCCTCAAAGCCTTCGACGGCGAACACTGGCGCAACCTCTTCGACTCCCGCGT CGGTAAAACCACCTGGCCCTACGGCTCCGGCGTCTGGAGCAAGAAGGAGTGGGTCCTCCCTGAGATCGACGACGACGACA TCGTCTCCGCCTTCGAAGGTAACTCCAACCTCTTCTGGGCTGAACGATTCGGCAAACGCTTCGTCGACATGAACGATCTC TGGGTCAAGCACTGCGGAATCAGCCACACCGGAAGCTTCAAGGATCTGGGCATGACGGTTCTCGTCAGCCAGGTTAACCG CCTGAGAAAAATGAACCGCCCTGTAATCGGCGTTGGATGCGCCTCCACCGGCGACACCTCGGCTGCCCTCTCAGCCTACT GCGCCTCCGCTGGGATCCCCTCCATTGTGTTTCTCCCGGCGAACAGAATCTCCATTGCTCAGCTGGTTCAGCCAATTGCC AATGGGGCATTTGTTCTCAGCATCGACACCGATTTCGACGGCTGTATGCATCTGATTCGCGAGGTGACGGCAGAGCTTCC GATTTACCTCGCGAATTCGCTGAATAGTTTGAGGCTTGAAGGGCAGAAAACTGCTGCAATTGAGATTTTGCAGCAGTTTG ATTGGCAGGTTCCTGATTGGGTGATTATCCCTGGTGGGAACCTTGGGAATATCTATGCTTTTTACAAAGGGTTTCAAATG TGTAAAGAGCTTGGGCTTGTGGATAAAATTCCAAGGCTTGTTTGTGCTCAGGCTGCAAATGCAAACCCTTTGTATACCTA CTTTAAGTCAGGGTGGAAGGAGTTTCAGCCGATGACGGCGAAGACTACTTTTGCTTCTGCTATTCAGATTGGTGACCCTG TTTCAATTGACAGGGCTGTGCTTGCATTGAAGAATTCTAATGGGATTGTTGAGGAAGCTACTGAGGAGGAGTTGATGGAT GCTATGGCTCAAGCTGATTCCACTGGCATGTTTGCTTGTCCTCATACTGGGGTTGCTTTGGCTGCATTGTTTAAGCTGAG GAACTCTGGGGTTATCAAGCCTACTGATAGGACTGTTGTGGTGAGCACTGCTCATGGGTTGAAGTTCACTCAGTCTAAGA TTGATTACCATTCTGGGCATATTAAGGACATGGCTTGCCAGTTTGCGAATCCGCCGCTGCAAGTGAAGGCTGACTTTGGG TCTGTTATGGATGTTTTGAAGAAGTATTTGAAGAGCAAGGCTCCAAAGAATCATTAGGTTAGCAAGAGTTCCAAGCTTTG CTATTTGCTCTGCTTGTTTGCTGTTTTTAGGCACTGTAGTGTTGTCTTTTGTATTAGCTTTAAGTCTTTTTGGGATGATT TACTGGCATTCTGTATGCTGCTCCACATTGGAGCATGCTAACTGGATTTTGTTGTAGATTATCTTTGTTGAGCATGCAAT AGCTCCCCTAGAATTGAATTTGATAAGATGAGGAATGCTCCTCATTGGCTTGTTACTGGATTCCTGATCATCCTCCTCCC CCAAAAATGAAAAATTTCTTACTGTATTAGTATCAAGCAGCTGTTTGCAATAAAGGAGTCATCCTTGCAATTGTTATCAC AATGAAGGCCTGGGGCCCCATGAGTGCTGAGTAGCTGAGTTGAATAAGTGTTTGAAAGTGAGGGAAAGGTGAAGATATTT TTGTGTAGAGAGTATTCAAGGTAAGGTAATAACAAATTGGAGTTCCATGGCTTAGCTCAACAGCTTGTATAGGTTATAAA ACCCTTACTCTAGGATTTAGCTCTTCTCTCAAAATCAAGGGTTCAATTTTAAAAGGCAAAATGAAGAGTTATAGTCATTG ATTAGAAAATACACCATTGAAACTTGTTTTGTTAGACTAGTGGAAGTGTGTAAGGAGTGTGAACAAGCACTTTTGTTAAT GCATCTGGCGAAAGCTCGATATTTCTAAAGCTATACATGGTAGCTTCTGATATAACTTGATTTTATGCCTATAGATGTGG TTTGCAGAGTTGTAACCAAACACCACATTTCTTATTCTCCTGCTTTCTACCTCCCTCGTTCTTTCCTCGCATTCTTCATT TTTTCTTCTTCCACCTCCCGGTCCCCCTATCCTAGTACAATACTTGCATTATCTTTTTTTTCCTTTGATGTAATTCAAAA TTCACTTTTCATGTGTAGGTTTTGGGTGTAATATATAAGTGGTCTACCACGTTCATCTATTGCTTCATAGCACATACAAA ATAGTCTAAAGTAAATTTTAGTCACATGTCAATGTGACATTGACATTGGAATCCATTATTGTTCAAAAGTTATTGTTCAG AATTCATACTGATTGTCAAACAGATTTGTAAACCCAATGGCTTTGATCGTTTTGGGCCAACCCAATGGCTTTAAGCCAAT TGGTCTAATCTCAGGCCAGAATAGGAGTATTGCAACACAACAAAGCGTTGTTTATTGTTGGGACATCCCACATGTGACAT GCCCTATACATCATTTTTCTTTATAATTCATTACACTGCATTTCCCAAATTCTTTGGGATAACTTTATGATGATGAGCTA TATTTTTATATTTGTTTTCATCCGCTTGTGTTAAGCAAACCAAACAGAAAAGGGAGATGCGTTGACTGTAACAATGGTAG CCAGAGCAACCTGTTCTAGCTGTTCCTTTATGTTTCAAGGGAAGTGACAACCATATAATATGCAAAATCAGAAAATCATA GTCTTTTTTTTTTGAAATAAGAAAATCATAGTCACAACCACCAAAACTGAACATTTCAAACGTTTGTTCAATACAATTTA ATAAGAAGAAAAACAAGAGCTGTATCATGCATGTATGCTAGAATTCTCATAGAAAAAAACTAATACTTATATTCCACTAT AGTCTGTATGAATTTAAACTCAATGCATACTTCAGAAAAAAAATCTCAAAATAATACAAAAAAAAAAATCAATTAAAGAA CTAATAGTATTTTTGTATGATTGTATCTATTTCTCATTCTTTAAAATCAATTCCGGCACTGAGAAGCTATGCTCATTCTC AGCTTCTCTCTGAAATTGATTTTGGCATCAGAATCAATTGTATAAGGATTTCCAATTCAACTTAGTCCGGGCCATAGATT GGACTTCCCTAACCCCTGCTTCTCCTTGGTGGAATTCATCTTCTCTATCCTCAAACCAGCTCTGAACCTTTCAATGAAAT TATCAGCTTTGCTATCAACATCAGGACTTGCATAGAACAATTGAATTTCACCATCTTCACCGGTTGCTGAGTCCACACCT TCATCTGAATCTGGAAAACTACTCTTAATGCTATCTATCCTTACAAAATCACCCTGCACCCTGAACTTCCACACCGGCAT TTTGAATGGTGGAGGCGGTGGTGGCGGCGGAGGTATTGAGTTCAGAGGTGACTCATTTCCAGTAAGTAGTACTTTTTCCT CCAAGGCAAAGAAACTCTCTTCCTTGTTTACCACACCCTGATGAAGAGGTTTGGTTTTGGATACAAGCTTGGAAGATAAA TGACGTGACGGTGGTAGTGGCGGTGGCTGTGGCGGCGGCGATGCAGAGATCAGCTTCTTATGCTTTCTCTTCTTTGAATA GAACAGGTTATGAAAATCTGAAGATGGAGATGGCAGTGGCGGAGGTGTTGGAGGGTGTGACGGCAGAGGAAAAGGTGGTT GATCAGAATTCAGCATGCTCTGAAAATTCTCAACGCTTCTGCTTCTCTGTTTCTTCTTCTTTCCCTTCAAAGATGCCAAC AACTCTTTGGTTGCACTTGCTTTGTTATTCTTCTTCTTCTCCCTAGCTTGTAACAACTTTTCAGTATCAGATTCAGATCC TTTCAGTTTTGGTTTCTCAATCGCTTTCTCCTTGTTTCTTCCAACATTGCTAATAGCTTCAAAAGTGTCCACTTCAATGT TCTTGATGCTTTGTTTCATGATGCTCTGTTTCTCAATGCTCTGTTTTTCAGTGCTCTGTTTCTCTATGCTCTGTTCTTTT TCTTCTTCTTCTTCCTTATTTGCAGTGTCCATGTCCAATCCACGGTAGCCATTAACACGGGTATCATCAGAAAATCGCCA CCGTTCATTCCCCCACGAAGATTCTTGCCGGAGATCAGGGTAGGAATTGAAACTTTTCAACCTGTAATAAGGGGTTGGAT CAGGGTTCTCCTCAAACCATGGTTTTGTGTCAGAGAAGCTTTGATTATCTTCATAGGAACGTGGGGTTTCATTGTTGTTT GTGGCGGTGTTGTTTCTGCTAAGAAAACCACAGAGGATTGCAAAGAGAACAAGGATGAGGTTGAGGGAATCCCAGCTCTT CTTCACTGATTGAGGTTTGAAAATGTGGGAGGTGAAGGACTGCAGTGTGGGAATGAGGACGAGGATGAAGGCGAGTGCAA TCACCACAAGGCATATGAGAAGGGTGCCGGAGGTGGCAAATAGGGAGTATGAGCGGCGGAGGCGGCGGCGGCCGGAGCTG GAGTTTTGGAGCCAGAAGGGTGAGGATGTAGCTTGCTCCTCTTCTTCCATTTTGGGATGGAAACAAAAGATGAAACTTGA GAGTGATTGAGCTTTTGAGATGTGATGTTTTTCTCAAGTTGAGTTGGTTTGGGTTTTGGTTGTTTCTTGTATGTATGTGC CTTTGGGAGATTGGGAGTGGTTGCTTGGATTTGATCTTGCTTTTTGGTTCTTGATTGCTTTATATATATAGATAGTATGG ACCACATGATTATTTAACGTGAAGTAAAATTGCATTTGTAATTGGCTTTCACTTAGTATAAACTTATAGACAAGTTTTTT TCCTG
CDS sequence (LotjaGi3g1v0029100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCTTCCTCAACCCTCTTTCAATCCTCCTCGTTTTTTTCCGGCGGTTTTCCACTGCCACCTCCCCAACGCAA ACGTAAAACCCATTTCCACCCAATCAAAGCCCAATCTCAACAACAAAACACCGCCACCAACAACAACTCACCGCCACAAC CACCACCACCTTCCTCCTCCAACATCCGCGACGAAGCTCGCCGCAAGAAAATCTCCACCGGCGACCGCCACCTCTTCTCC GCCAAATACGTCCCCTTCAACGCCGACCCATCCTCCACCGAATCCTACTCCCTCGACGAGGTCGTCTACCGCTCCCAATC CGGCGGCCTCCTCGACGTCCAGCACGACATCGCCGCCCTCAAAGCCTTCGACGGCGAACACTGGCGCAACCTCTTCGACT CCCGCGTCGGTAAAACCACCTGGCCCTACGGCTCCGGCGTCTGGAGCAAGAAGGAGTGGGTCCTCCCTGAGATCGACGAC GACGACATCGTCTCCGCCTTCGAAGGTAACTCCAACCTCTTCTGGGCTGAACGATTCGGCAAACGCTTCGTCGACATGAA CGATCTCTGGGTCAAGCACTGCGGAATCAGCCACACCGGAAGCTTCAAGGATCTGGGCATGACGGTTCTCGTCAGCCAGG TTAACCGCCTGAGAAAAATGAACCGCCCTGTAATCGGCGTTGGATGCGCCTCCACCGGCGACACCTCGGCTGCCCTCTCA GCCTACTGCGCCTCCGCTGGGATCCCCTCCATTGTGTTTCTCCCGGCGAACAGAATCTCCATTGCTCAGCTGGTTCAGCC AATTGCCAATGGGGCATTTGTTCTCAGCATCGACACCGATTTCGACGGCTGTATGCATCTGATTCGCGAGGTGACGGCAG AGCTTCCGATTTACCTCGCGAATTCGCTGAATAGTTTGAGGCTTGAAGGGCAGAAAACTGCTGCAATTGAGATTTTGCAG CAGTTTGATTGGCAGGTTCCTGATTGGGTGATTATCCCTGGTGGGAACCTTGGGAATATCTATGCTTTTTACAAAGGGTT TCAAATGTGTAAAGAGCTTGGGCTTGTGGATAAAATTCCAAGGCTTGTTTGTGCTCAGGCTGCAAATGCAAACCCTTTGT ATACCTACTTTAAGTCAGGGTGGAAGGAGTTTCAGCCGATGACGGCGAAGACTACTTTTGCTTCTGCTATTCAGATTGGT GACCCTGTTTCAATTGACAGGGCTGTGCTTGCATTGAAGAATTCTAATGGGATTGTTGAGGAAGCTACTGAGGAGGAGTT GATGGATGCTATGGCTCAAGCTGATTCCACTGGCATGTTTGCTTGTCCTCATACTGGGGTTGCTTTGGCTGCATTGTTTA AGCTGAGGAACTCTGGGGTTATCAAGCCTACTGATAGGACTGTTGTGGTGAGCACTGCTCATGGGTTGAAGTTCACTCAG TCTAAGATTGATTACCATTCTGGGCATATTAAGGACATGGCTTGCCAGTTTGCGAATCCGCCGCTGCAAGTGAAGGCTGA CTTTGGGTCTGTTATGGATGTTTTGAAGAAGTATTTGAAGAGCAAGGCTCCAAAGAATCATTAG
Protein sequence (LotjaGi3g1v0029100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSSSTLFQSSSFFSGGFPLPPPQRKRKTHFHPIKAQSQQQNTATNNNSPPQPPPPSSSNIRDEARRKKISTGDRHLFS AKYVPFNADPSSTESYSLDEVVYRSQSGGLLDVQHDIAALKAFDGEHWRNLFDSRVGKTTWPYGSGVWSKKEWVLPEIDD DDIVSAFEGNSNLFWAERFGKRFVDMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNRPVIGVGCASTGDTSAALS AYCASAGIPSIVFLPANRISIAQLVQPIANGAFVLSIDTDFDGCMHLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQ QFDWQVPDWVIIPGGNLGNIYAFYKGFQMCKELGLVDKIPRLVCAQAANANPLYTYFKSGWKEFQPMTAKTTFASAIQIG DPVSIDRAVLALKNSNGIVEEATEEELMDAMAQADSTGMFACPHTGVALAALFKLRNSGVIKPTDRTVVVSTAHGLKFTQ SKIDYHSGHIKDMACQFANPPLQVKADFGSVMDVLKKYLKSKAPKNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 1 | 64 | 64 | - | – | |
| PANTHER | 41 | 524 | 484 | 1.4E-254 | – | |
| PANTHER | 41 | 524 | 484 | 1.4E-254 | – | |
| SUPERFAMILY | 95 | 519 | 425 | 1.7E-110 | ||
| Gene3D | 107 | 491 | 385 | 7.8E-186 | ||
| CDD | 148 | 478 | 331 | 8.70819E-161 | – | |
| TIGRFAM | 153 | 477 | 325 | 2.0E-62 | ||
| Pfam | 166 | 472 | 307 | 7.5E-49 | ||
| ProSitePatterns | 193 | 207 | 15 | - | ||
| Gene3D | 202 | 303 | 102 | 7.8E-186 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi3g1v0029100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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