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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0030600 |
| Transcript ID | LotjaGi3g1v0030600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone H2A deubiquitinase (DUF3755); TAIR: AT3G07565.1 histone H2A deubiquitinase (DUF3755); Swiss-Prot: sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1; TrEMBL-Plants: tr|I1M581|I1M581_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0030600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3302697..3309634) extracted from Lotus japonicus Gifu genome v1.2.
CGTAGAAATAGAAATTAGTCTTTAATCCTTATTTCAATACACCCTGCAATTCATTCCAATTTCACCTTCATTCCCAAAAC CCTCTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATCGTTCTCTCCATTCTCTACCTTCACTCTCACGTCT ATCGCTTTCAACCCCTCACTGTGTTCGATTGCGATTTCTTGATTTTCTTCTCGTCGGTGCTTCGCGGGTCACCACAATTG GCGGGAACCGAACCGTCAAGGTTTGTTCATCGATCGATGATGGCGAACCCATCTGGGAACCATCAAGAACAACACGTTCA TGCTCATGCTTCGTCTGCCTTAACCGGCAATTCCGTTCCTGAAGCTTCTGCCGTCGCTGTTAACATCCCCAACATGAAGC ACAACCCTGGCATCTCGCTCGATTGGAGCCCTGAAGAGCAAGCAATTCTTGAAGATGGACTCTCCAAGTCAGTTTCTTCT TTATTTTTTCTTGGAATTTTTCTTGGGTTTTTGTTTTCTTCTCTATATGTCAATTCAAAATCTTGTCTTTGATGTGATAT ATTGATTTTGGAAGTGGGTTTTGAATTTTATCTCATTCTTGCTTAACCATGTTGTTGAATGATTAATTGAGTATTTTTTT TAGTCTCAATTTTGTTTGCCCTAATTTTCAAATTCAATCTAATATTGAATTTGAAATCTAATCCATATTGTTTATTGATA CGAATTTAATGATTATATAAGTATGTTAGTCTCAATTTTGTTTGCCCCAATTTTTGAATTCAGAAAAGTTAACAAATGAT TTTGGTCTTTGGCAAGGTGTCCTCCCTATAGGCATAGCTGTGGGATTAATCCTCGGGCTGGGGTGGTGGTTAGGCATAGA GTTCACTTGCACTATGACCAACTACTGTGTGGTAGTTAACAAACAATTTAGTCAAACTAAAAAAGATGAACACTGAATTA AAGTATTATTATTGTTGTAATTAATAAATCGATATAAGTTATATACGGGGCCAGCTAGCTAAGTGTGTGTAACGTATACA CGTGGGCAGGCTTTTTGATTCTGTTTGATGCTTATCCATGTGTTTGTTTCTTAATTTTGAACGGACGTTTTCCCTGAATA AACGCGTACTAAAACGCTCTCTTAACAAGTTGAATGTGGAATCTTAAGCTTGGATATAATGAGCCAAATGCAAGCGGGCT GGTGAGTTTTCTTTACTCACTCCTGTAGATGTTACCAATTGGACACAGGGATAACATTTTTGATCCACGCTAAGCTTGCA GGCAGTGAATCCAAAATTCCCAAATCAGTTTGGAATTAGGGTGTTCAGAGCTTTATGCAGAATGTGTTCCCATTGCCTTG TTTTGTTTCATCATCTTTTAAATGTCTGCATACTTATGTTTACCCCATAGTAGTCAGTCGCGGATCACGGCCTGTCGCGG ATGACCCCCAAAAATGAAATCCCATACAAGGGAAGGCCGCTATTGGCCGCTATTGACCGCGAATAGCGGGATTTCACGGC TGCGATCCCGTCGCGGCAGGGGTCCACTACGCTATGCGACGGCACTATAGCGCCGCTATTGCGCGCTATTGAAAACTATG GTTTACCCTAAGATTTATGAGAAATTAGGGCATTCCATTACTGGTTGTGTGCATGAGGGAAGATATCTTCTTGCGTCTAT CCTTTTCTTACACTGGTTGCAATGGAAGCTTGAAATCAAGATCAATATTTTTGCTAGTGGTGATATTTTGTTAATTGTTT AGGTACCATGCTTGATTTGCGTTCTGTACTTAGATTCACATTGAATTTTTTACTGTTCAACACATGCCTTTTTGATTTAT TAGTAATATGTATATGTCAAGTCCTATGGGTGTGGTCATCATTATATTAATGAAAATTATGAAATTTCCCTTGCAGGCAT GTCACAGAATCTAACATAGTGCGCTATGCAAAGATAGCCCAACTGTTACAGAATAAGACAGTCCGAGATGTAGCACTGCG AGTTAGGTGGATGAACGTGAGTTACATATTTGTTTGTTGCAGCCTTAAGTAATTTATATCAATGTGAATGCTAGAAAAAT CCATCTCCCCTTTGGTATGTGTCATTGCTGCATTTGTCATTGCATGGTATATATCTAGCAAATATTGGAATAGGTTCCCA TCTCTTGTAACCCTCTTTCATGTGCATATTTTACAAACTGTTCTTCGGCTTTGATAAGATTCTCAATAAGATTTAATAGA TTACTTAAGATAGTTTATTATTCTCTTGATACTTAATAATTGTGTGCCTTCCTGGGAGAAAAAAAATGGCAGTGATGAAT GGTTTCTCCATGCAAGACACCTTGATTCCTTCCATACCCTTAATAATAAAGGAAATGAAGAAACTTTATGTCATCCAATT ATGAGATTACTTTAAACTCAATTTCTGTGTGCTCTTGATTTAACGACATATTTGTATGCATTTTCTTACAGAAGAAAGAA AATAGCAAGAGAAGGAAGGATGATCATAATTTATCCCGGAAAAGTAAAGATAAAAAGGTACAAATTTCATTTATTGGATA TCATAAACTGTGTTTTGTGTTTCGCTTTTATGCATGATGAGATGCTTTTGAATGTGTTTCTCTAATCTATGGATGTTGGT TGTGCCTAGACCTTTTAATGTGAATGTCATGTTTTGAACACTGTTTCCCTTGCTTGCTCATCTTGCCACCCGCCACCCCT ACTTTGAATACACATATTTAACTGAAGGGAATTTGTCTTGAATTCTTTACTGATAGATCTAGAATAAAGCCCATTTGATC ATCTTCAGATTGGTATATATCAGGGTGTTGTGTAGATTGAGGGCTGTCCTCCGGTTCTGTCCTTCTGTAGATTGCTTTAT GAATTCCTCATCCTAATTTGCATATAATGCATCAAACAAATCATCCCCCGCCCAATTTTCATCTTTGTACTAATTATTTT TCCAAAACCAGTTGGTCACATCTGCTTCCATAATTCATATGCAAACACACAGACATAATTATATAATATAATTTGATCAT CTTCAGATTGGTATATATCAGGGTGTTGTGTAGATTGAGGCCTGTCCTCTGGATCTGTCCTTCTGTAGATTGCTTTTATG AGTTCCTCATCCTTAGTGCATATAATGCTTCAAACAAATCGTCCCCCCCCCCCCCTCTTCATCTTTGTGCTTACTATCTT TGTGCTTACTAATTTGCATATAATGCATCAAACAAATCATCCCCCGCCCAATTTTCATCTTTGCACTAATTATTTTTCCA AAACCAGTTGGTTACATCTGCTTCCATAATTCATATGCAAACACATAGACATAATTATATAATATAATTTGATCATCTTC AGATTGGTATATATCAGGGTGTTGTGTAGATTGAGGCCTGTCCTCTGGATCTGTCCTTCTGTAGATTGCTTTTATGAGTT CCTCATCCTTAGTGCATATAATGCTTCAAACAAATCGTCCCCCCCCCCCCCTCATCTTTGTGCTTACTATCTTTCCATGA ACAGTTGGTGACATCTGCTTTCATAACTCATGCAAACACATAGATGTCATTATATACATTAGTGGGTTAGGTCCTAGATG TATTGTTTTTCCACCATAGCTTGCACAATATGCTGTCAGATGATATCATATCCTTATTATCAGGCTTCTGGAATTTGTAA TTTGTAAGCTCATAAACTTGTGAGAACAAAAATAACCTTTACTTCATGTCATATGTTCCACTGTAAATTTTGACATCTTT TTACAAATCATTCTCTGATAATTTATCAGCTCCGACAAAATTAATTCTGAATTTTAACTAAGCTTTCCTTGGACATGAAA ATATTATCTCCTATTTGTAACTCTCAACTATAGTATTTGAAAATTAGGTTATTTTGGCACCTTATGTTGCTGTACTTCTT CAGATTTCATTTTCAAGGGATAAATGTTGCCTGAACTTTTCATATGCTGCCTTTGTCTTTTGCTTTTGACACTTCCCTTT ATACACACCATTATGTCCCAGAATTGCACTGTGATGTCTAATATTATTAGTTTTTTTATTTGAAACAGACCGAGCTTTGT TGTTAATGTTTTTAACTACGAAGAAACTATCTTCACATTTTGGTTTTATTTCTTGTCTTGTTACATAATGAATAGTTTAG CATAATTGCTTAAAGAAATACTAGGAAACAAAGGATAAGTAACTGAAAGGAACAAAGCTAATGAAAAGTTGGTGCATTTA TGGAATACTGGAAACCCTAGGTTCTATCTTTGTGTTATATTCATACTCAATGGGGCTTTGGATGGTTAGTAAAAGTCTAT TACTGTTTCCAGGAAAGGGTTTCTGATTCTGCAGCAAAGCCATCTCACTTTCCTGCTCGGTCCAATGTCCCCCCATATGC TCCTCCAATGATTACAATGGACAATGATGATGGCATCTCATATACAGGTTGGGAACAAAACTTGAGAACTTCTTCATAGC ATTGGATTCTGTTGGTTTGGAAATATGCCTCTATCTCTCACAGGCTCTTCTGTCAGCCTTGAAACATCTTATGTACTTGA ACTCCTTTTTTTAAATTTTCAAGCTTCTCTTTTCAAATGTGATTTTTTTTTTGGCAGCAATTGGAGGTCCGACTAGTGAG CTATTAGAGCAAAATGCACAGGCCTTGAACCAAATCTCGGCAAATCTTTCTGCTTTCCAGGTGAGTTGACAACATTTCTC ACTGATTTTATCTGTTGAAAGACCGCTTGACCAAGAATTGGGATTCTGAATCAGACTTGTTATGAGTTTATATTAACTGC GTGGATCTTGGTATTAGGCAATCCTTTTCTCAGTTCTCGTTTCCTATTTTCTCTCTATGTCCTTGGCTTGTATTCATTTC GTTTGTTAGATTTATGCATCTTAAATGATCTGACTAAATTAGGTTAACTTTGAGTTGGGAAATTGTCTCATTTGCTTTTC TCTATCTTTCAATTCAGTTTTTTATGTCTTCCTGTCTTAGTAGAGAATTTTCAGATGTAGGATGTTGTAGAGCTTTGGAA GTGCTTGAGGTTTTGGTTTGGCTGGTGATAGATGAAACCAGTGTTCAGTTCAGCTTAGTACTGTCTATAATGGGGTTATT CAATTATAACATTTAAAAGCAACAAAGAAAAATAAATATGTGAAGAAGTGTATTGTATAATTATTTTTCAAATTGATTAT AATCAATTTTTATTTTTCTAGAAGTGTTTATGTAGACAAAACAATAGCTGAAACAGTATTTATAGACCTGCCTTGATTCT GAAGCCAAGAACATGGATTTATTTTTTCAGTGCTAGAGCACCAGTATGTACTACACCACTTATAGGTCAACACTGACACA TGTTCTTATCTGGTTATTTATTCCTTTTTTAATTTCTTTTTTCAAATGAAAATTGAAGATAACTGTCAGTGCGGAAAAGA GTCCTCAGTTGTGTAATAGTAGTACTAAATATTTGCTCCAAGAACATAGGTTTAACATAAAATACCAGAGCAGATAGTGA AGTGTCATCAACTGATGTTGTCAGAATGAGAGTTACATTCCTAAACTCATATTAGGGGACTTAACCAAAATACAGAGAAT CATACCTTGGATGTGTATATTTTAATATATTATCTCAAACTTTCCCTGCATGCATTTGTTGTTTCATATCTTATACTAAT TTGGTCATCAACTTGGCATTGGGTATCTTAGGATGTAGGGGAACTGCAGAATTGTTTGAAACTGGGATAATTCATAATAT CTCTGCTTGGTGTTTTAAAAGTGGTGCTCTAGTTTATCAGTATGGTTTCCATTATCATGCCATTCTTTATAGCTGTAAGC TAACAATTTTTTTGTTCTCTCTATTTTGTTTGCAGATACAGGAGAACATCAATCTTTTCTGCCAAACTAGAGATAACATC TTTAAAATCATGAATGAGTGAGTTACACTGTTTTTTTGTTCCTTTCTATATTTACTCTATTTATAATGACGTATGTTAGT GCAAGTGATTTATTTGTTTCTCTTTTTACATTGCTGTTAGAAATGTATGATGTTGGCGTTTTAATTTAAGGAGATAAGTA TTTGTTTATATATCTGAATGCTATTGTTGATGCAATCAATCCCAAGTCGACTTGATGTTTATGGCACCTAAGCTTGTCCT CTAAGTTGATTTTGGCTTCATAATCAAGTGTAGAAAGATTTCAAACATGCACTTACATGCTTTTTCTCTTTATTTTCTTG GCAGTTTGTGTGATACACCAGAGGTGATGAAGCAAATGCCACCTCTTCCAGTGAAGGTCAATGACGAGCTAGCCAATTCA ATACTTCCAAGAACCCACCACCATCATGATGCTGCTTAGTCACTGCCAATCAAGTTACCCCAGGATTTACTTTTGAAAAA AATAATGAATAATTGTTGATAACCTTCAAGTTTGAATTAGTCTTCATAGTATTTTTTTTGTTCAAATGTTGGTTTTGTAA CTTTTGTTCAATTGTGGGCTCTAACATAGTTGTACTATAGGAATTATTTGGTATTCTTGGTATTAATTGAGTTCAATTTA GGCAATCAGAGCAATAAGTTGTATAATTCTAATTTTCGTTTCTGTTGATTTTGTTAGTACAAATTGTTATCCTGAGGGCT CGTTTGGTGCGACGTATAGTATAAGGCCTGATAGTATAAGACCTGATAGTATTAGGCCTGATAGTATAAGCCCTGATAAC TTTCTTATACTATCCAGCGTTTGGACATACTCGGTATAATTTACCATATCGTTTAAATTAATGCAATTTTATGTTTAATG AAGTATTGAATAATGGTATATAATAAAAATCAAATATGGAGGTGATTATAACGGTGGTGGCGGTGGTGATGGAAGTAGTG GTAGGTTGGTGGTGGTGGTGGCAATGGTGGTAGGTTGGTGTGGCGGTGGTGGTGGCAG
CDS sequence (LotjaGi3g1v0030600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCGAACCCATCTGGGAACCATCAAGAACAACACGTTCATGCTCATGCTTCGTCTGCCTTAACCGGCAATTCCGT TCCTGAAGCTTCTGCCGTCGCTGTTAACATCCCCAACATGAAGCACAACCCTGGCATCTCGCTCGATTGGAGCCCTGAAG AGCAAGCAATTCTTGAAGATGGACTCTCCAAGCATGTCACAGAATCTAACATAGTGCGCTATGCAAAGATAGCCCAACTG TTACAGAATAAGACAGTCCGAGATGTAGCACTGCGAGTTAGGTGGATGAACAAGAAAGAAAATAGCAAGAGAAGGAAGGA TGATCATAATTTATCCCGGAAAAGTAAAGATAAAAAGGAAAGGGTTTCTGATTCTGCAGCAAAGCCATCTCACTTTCCTG CTCGGTCCAATGTCCCCCCATATGCTCCTCCAATGATTACAATGGACAATGATGATGGCATCTCATATACAGCAATTGGA GGTCCGACTAGTGAGCTATTAGAGCAAAATGCACAGGCCTTGAACCAAATCTCGGCAAATCTTTCTGCTTTCCAGATACA GGAGAACATCAATCTTTTCTGCCAAACTAGAGATAACATCTTTAAAATCATGAATGATTTGTGTGATACACCAGAGGTGA TGAAGCAAATGCCACCTCTTCCAGTGAAGGTCAATGACGAGCTAGCCAATTCAATACTTCCAAGAACCCACCACCATCAT GATGCTGCTTAG
Protein sequence (LotjaGi3g1v0030600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMANPSGNHQEQHVHAHASSALTGNSVPEASAVAVNIPNMKHNPGISLDWSPEEQAILEDGLSKHVTESNIVRYAKIAQL LQNKTVRDVALRVRWMNKKENSKRRKDDHNLSRKSKDKKERVSDSAAKPSHFPARSNVPPYAPPMITMDNDDGISYTAIG GPTSELLEQNAQALNQISANLSAFQIQENINLFCQTRDNIFKIMNDLCDTPEVMKQMPPLPVKVNDELANSILPRTHHHH DAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 5.3E-99 | – | |
| PANTHER | 1 | 234 | 234 | 5.3E-99 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| SUPERFAMILY | 38 | 103 | 66 | 8.07E-5 | ||
| SMART | 46 | 99 | 54 | 0.0022 | ||
| Gene3D | 50 | 125 | 76 | 3.6E-7 | – | |
| CDD | 50 | 99 | 50 | 5.16771E-6 | ||
| MobiDBLite | 100 | 143 | 44 | - | – | |
| MobiDBLite | 100 | 126 | 27 | - | – | |
| Pfam | 183 | 216 | 34 | 3.9E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0030600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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