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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0031000 |
| Transcript ID | LotjaGi3g1v0031000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding ASCH domain protein; TAIR: AT2G43465.1 RNA-binding ASCH domain protein; Swiss-Prot: sp|A1YEW3|SCND1_GORGO SCAN domain-containing protein 1; TrEMBL-Plants: tr|I1MD46|I1MD46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0031000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3346639..3352945) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATAATGAGCTGAAGGGTTCAAACCAAACCCTTCCATTTTGAATGAGTACCGGAACAAGACCCTATTTATTTTATAA AATTTTCAAAAAGAAATTACTTTTGATTTATTTTTGGACGTCTAATATTGTTCGACGAGGGTCCATAATATGCTCATTTA TATGATTTGGGTCATTGATATTCTAAATGAGTGAATTTGGTTACGTAAGTAAATTGAGTCCTTCCGTCTGAGTTTCGTCC AATTATTTATTATGTCCCTCTAAGATAGCTCAAGTGGTAGGAGTCGTAGGACATATGAGTTGGGTAGGGGGAGGTCAAGG GATCGATTTCTAACCGTTGTAATTTATCTTTCCGATATACCTAGGGGGAAGATAATTTACCGCTTAATTAATACAGATTT AGCTACTATTAGGCGTGTTAGCCGCGAAGATCTCATTATGTAAATTTGTGTCGGACTTCACAACGAAAGCATTCCCTCTC TAACCTCCATCACTAACCCCATCTCTTAGTCAAAGGTTTTGTGACAGATTGATTCTCCGTCGCAAAAAACCAGTTTCACC TCCAAAACGAAAAGCTCACACCCTTATAGGCAAATAGGTTTCGTTTGTACCAATTGAATGGACAATGGAAACCAGAAGCA ACGATTGTGAGAATGGCAATGCGTGTTCTTCTTCTGCAGTGAAACTCAGTGATTGTATTGAAGAGCTTGTCAAGTTCACT CTCTTCTCTCGCTCTCACCTCAACCTTCTCAATCTCTCAACTCAATTTTGTTCTACCCTTCTCAAAGATGACCCTGAACC CTCACCCTCTTCACATTCACACCCTCAAGGTACTTAATCCTATTTCTGCTATTTTTATCCTTGTGTGTGTTGTTTTGAGT TGAAAAAATGTTTTTTTTTTTACTTGGGTGTGTTCAAATAAGCCAATGTGCTCACTGCTCAGCTCAAAACAAGTGAAACA ATCAATTTTCATTATAAAGTTTGAATTTTTCTATCTGGGGTTGGTTTAGAATTTAGATCCTATGGCAATACAATGTAGAA GCATAGTTTGACTGATTTGCAGATGGTTTGCAAGGAGTGCCGTCGTATCCGTTGTACAAGCGTCTTGCTTTAGCTTTGTT GAGGTGTATTGATACTGGAACATTTTGGAGTCCAGGCTATAATGTAGCCATGGCTCATGAATTGGAGAGTTGTTCTCTGC AGCAGAAGTATAATGAGTGGCACAAATTGATTGTAGAGAAGGGGTCTGAAATAGTTAATGTAAAGTGTTATGTTGACTGA TTCAATTGTTTGCTTCTCTTTATCTATGATTAATCTGGTTTCAATATAAATGATATATTTTTTGTTTCGACAGATTTTGA AGAGTGTTCGGTTGGAACTCCATGTTCAAGAGCCTTTTCTTACACATTTGAAAGGTATTAATCACTCTGTTGTGCATCCG AATATGATGAAGTTCGATGTAGTGAGTCAAGCTATAAAATATGCATATTTGAATAAGCAGTGATGCTGGGTTGAAAAGTT ATCTACTGACTCTAAGCAGTGTTTAATTCAAAAGAGGGGAAGGGGAGGAGGATTTAATTATATATTTTGTTTGACTACTG ATTATTCAATAGTTAATCAAATCATATGTATGGATCATTGGCATTTTGAGATACTAACTATTTTCCACGATACTTCGAAT ATATTGGCAAAAAACTGAAAAAGTGAAGAAATAGATTCATTATTCCATTTCTATTCCGACCAATTCAAGACAGATTGCAG TAGCATTCAAGGGATTTATGTAAATACTCAGAATAGAATGATGTGATATTTAGGTTCCTTCAATTCCCCTCCAATCAAAC ACTATATAAAAGAGAGAAAAAAACTGCATGCAAGTACCATTGTTGTTGTCTTTGTACTGGGCATTCTCATTCCTAGTCAA ATTCAATTCTACTATGCTATGTCTTATGAAGTTATTGCCTGCAGATGGCCTGAAAACAATTGAAGGGAGGTGTGCCCGTG GTAAACACAACAGGTTTCAATATAATTTTAGTTATTGTTTCAAATACATGGCTAGATATAAATACCTGTTATTTTATCTT AATTTTCTTGATCATTATAATAGGGTACCATACTTATTTTAGTTTTAAGATAACCCTTTCAACATTTGTTTTTTTTTTAT TGATAAGCATTTTCATATGTAGTTAATGGTAGACCACCAAATTCAGTGTTGTTTGTGATATGCATATTTCCAATTCTGAG TCCTCTTCAATTAAAGGAAATATAAAAGTAACTTCAGTAATCGATTGGAGGAAAACTCAACCAACTGAACAAACAATTGC CTTATTTGTTAAAAGTTTGAGACCTTCCATGTCAAGAACAAAATTCCAATGGGCTTGTAGCTCAATGGGCATGAGCTGAA GTCTCATGTTCTAGGTTCTGATGATGCGAGAGGTTTGATGCTTGCCCTTCCATTATAACCCAAAAATAAAATGCCTTTGT CCCTTATCTAAGGAGCCAAATTATGTGATATGAAGAATTTCATCAAAATAAGCTGTATAACAGAAGCCATCAATGCATAG TTGCATCCTACAAACTATTTTGTCGGTCACCTGATCCATCTTACCAGCTCTATATGGACGTTAGTTGGCTATTGATTTAC TATGGGCTATATTAGAATTCGAGTTAGGTCTAACTTTACCCGAAAAGCTAGCTTAGAGGTGAGGGGTGTTGTGCCTCTAC CCTTTATAAGGACTTATTTATCTTAAGTCAATGTTAACCTTAACACACCCTCACGCACAGAGCTGGAGATCTAGAGCGTA GAATTTGCAGGAATGAACATTTGCGGGTGGCCCATATATAAGTGGTCTACAATAAGCGGATCTAGGATAGATTTTGATAC CATATCAAAATTCAGTTAGGACTTAGGCCTAACTCCACCCCAAAAGCTAGCTTAGTGGTTAGGGTTGCTCTACCCTTTAT AAGGACTTATTTGAATAAGTTTCTAGTCAATGTGGGACCTTAACCGGACACATTTTGGTCATTTACTTCTCTCATTCATT TATCTTGTCTTGCTCTTTTTGTTTTCACTCTAATTTGCTTTCCAGGATTGAAGTAGGAAATCTGATTCTCTTCAATGAGT CTCTGGTGTTTGAAGTTCAGGTAATGCTTTATTTCATTAATAATTGGTGATTCTGGCTATTATGGCTTTGCTACACTCTC TAAAGTAACTATATCATTTTGTAGGGAGTAAGGAGGTATGCTTCATTCTTTGACATGTTGGAGGCAGAAAGCCTTGAAAA AGTTCTTCCAGGAGTTGAAAGTGTTGAAGAAGGTAATAAATATAGAGTAAGACATAGATTCAGCATGTATAACTAGACAA ACAACCAGTTTGAGAGTTTATCTATTCAAAATGAAGAATCAAAATGATCACATCTGGTTTACTTCAACTATTTATACTGA ATCTAAGCTCTGTTAGTAGCCATACTCCTCTCGTATGCAGGTTGTTGTGAGCCAAATTGAAGTTGACAAACGAAACCACT ATGGTTGAGAGAAAATGAGTGTTTAATCCTCATCTTAAAAAAAATATCATCACAAACTATCACAAAGCATTCCGCAACAA CAGCTAACACAAATTACCAAACTTCTAGCTAATTCCCATAGAATTATGTTCCTATAACTCTTCTTTCTACACAAATTAGT AAATTACTCTCTAATTCACAACAATTTTAGCTAAATATGACATTTATCAATTACAGGTGTAAAGGTCTATCGGAGGTTTT TTACAGAAGAGAAGGAACGTGAAAATGGTGTTCTTGCAATCATTTTTTCAAAACCTGCCCTTCAACCTTACATATCTCTG GCTAGCTTATTTTCTGTGGGTTCACTTTCCTGTAAAACACTGAAACCATAGTAACTGTTTTCTTGTTGGATTTAAAAATC ACCGACAAACGATCTAAAAGGATCTGATCTAAATGATTGGTTATTTGTGTGATTTTGCCTTTGATTTGGTAATTTTTGTT ACTTCCCATTCCCAATGATCATAATTTGTATTTCATATTCAGAAAAGACAATGGTTAGCTTAGTAATTATGGATTAATGT TTTGCAAAAGAGGAATAATCATTACTATTGATTCTTTACTCTCACATGTCAGGTTTCATCTGACTGCATCTGAACTAATG CACAAATTGTTCTAGAAATTCAGATAGTTCTTGACTAATGTGTTGTTCTGCTTTTATCCAGGGACTAAAGTATGAGGGTG TTCAAGGCCTTCTAGGTATAATTCATACTAGGGGGACAGTTCCTAATGCACTTCCACCACCAAGATCATCTCTATTAGCA TCGTTTAATTTGCCATGCAATCCAAATGTAAGAAAATGACTTTGTTACATTTTTTAGGGTTAAGCTTGCAGTGATTTAGT AATTTTCACCTCTTCAAGGAGATTATTTTTTAGCTGCTTCTGTCCATATATTTATGAAGAACCTTATGAGAAATTATTCT CCACATTAAGACTTTGAAAGAATTTTCCTTGTTTTTACATAATAAATTCAGATCCAAATTGAACAAACAACTTCATTGAT TCTTCATGGAAAATTATATATGCACACTTTGTGATCGTGAATCAGGAAATTTCCTTGAGTACTGGAGCTCGTGCGTTAGC CAAACATGCTTTTAGGAGTAGCAGTGGTTATTGGGGTTCTCTGGATGGGAATGGTAAGATTTCTTTTACTGGAATCTGTT TTTCAAATTCCATTCTTCCTTGGTTTCTAGGTTTTTCTTCAAGTAGAATCTATTTCTTATAGAAGATGTTGTCTAAAGAA GTTTTCTATGTTAAGTCCAATTTGTTTTCTGAAATGTTTAGTTTAGTCATTAGTGAGTATATTAATAGTGTATCTCACAT TCTTGCTCTAAGTTAAGTCACATGGTTTTTACTTATCCTGTCATCTTCTTTGTTCTTTCCAGATTCTAATAAAAATAGGC TTGCAATGAATGTCATTAACCACTTAATAACACATTGTTGCTGGCTGAATATACATATTGTCCCACCACATGGAGGTGTC TTTGAAATAAGGGTAGCGGAAGGATATGGTGCACGTTGGACAGAAGACGGAAGTAAGGTGTGTGGATATCCCACTAAATT CTGGTATTTATGTTTCTTCATGATGTTTTGCTAAAAAAAAGCTTTACACATGATACGCTGTCCTTATCTCTCATGACTTA AATTATGTTTACAACAGACTTGTCTATCAAAATAAAATTTCAACCTACTTCATTTCAGTGTAATTGTTTTTTTCAGTTTA TTGGATTTTTAGAGCCCTACATGCAAGATGGTCACTCAAAGGGATGGAAGCACTAGTTTTTCTAGCCAGATTGGCAGTGC CAGACCACACCAAGTACACCTTGTGACAGAATTCCAGCATTTCCTGTTAGCTTGTGTGGTAGTATTTGTTTTCTATCTCT ACTTTCATGCATGGTAACAAGTAACCATAGATGATGGAGTTAGTATGAATGTTATGTTTGGATAGTTGTTGGCACCAGTG CAATTGGACGTTAGCACTCACTTCGAGACAAAAGTTAATGAAACTCTTCTTATAGATTGGGATGAAGTTTAGCACAAGTA GTTGTACTTTTAAGAAATTTCCATTAGTGCATGTAGTTTCTTTTTCTTTTTTTTCTTAGGGGGGGGGGGGGGAGGGTGGG GTGCAAGTTTAGCACAAGTATTGAGTCATTAAATGTTACTGGTAAGTTCCATTTTGGCTTCTTCCTATCCTATTGATATG ATATTTATTATGGTTTTGGCCCCTTCAGATTGCCATATTGTGTGGGCCTTATGTTCAGTTTTTGTGACTTTTTCTTTCCT TTTATCACCTCTTCATATTTTTCCCCTCTCACTTGCCATTGATCATTTTATCTCCTGTCAATATAGTTTTCTATGTAATT CATATGTACACCAGCACCTCTTGTAATACATTTGTATACAACAAAAGCAACCAATCCCCATTTCATTGATAGAAATCTCT AACTAGACTAAGGGTATGTCTGGATATTCGTTTTCATGAGTACAAATGGACATTAGCACACACAGTTGAACTTTTTTTTA TAGATTGGGATGAAAGTTCGTTCAGGTTACTTCCGTTAATACTCTAACACTAATTTCCATATCTGTATTACAGTCATGCA GAAAAATTCGTTGAAGCATTTATTTCTGAAATGAATTTTGAACACCTAAGATTTTTTTAAACTGGTAAGATTACAAAGTA GTAAACTAGGAAGTGCAAACTCTTCTGATAATATCTAATTAAACTCATTTCATTAGTATATCATTTT
CDS sequence (LotjaGi3g1v0031000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACCAGAAGCAACGATTGTGAGAATGGCAATGCGTGTTCTTCTTCTGCAGTGAAACTCAGTGATTGTATTGAAGA GCTTGTCAAGTTCACTCTCTTCTCTCGCTCTCACCTCAACCTTCTCAATCTCTCAACTCAATTTTGTTCTACCCTTCTCA AAGATGACCCTGAACCCTCACCCTCTTCACATTCACACCCTCAAGATGGTTTGCAAGGAGTGCCGTCGTATCCGTTGTAC AAGCGTCTTGCTTTAGCTTTGTTGAGGTGTATTGATACTGGAACATTTTGGAGTCCAGGCTATAATGTAGCCATGGCTCA TGAATTGGAGAGTTGTTCTCTGCAGCAGAAGTATAATGAGTGGCACAAATTGATTGTAGAGAAGGGGTCTGAAATAGTTA ATATTTTGAAGAGTGTTCGGTTGGAACTCCATGTTCAAGAGCCTTTTCTTACACATTTGAAAGATGGCCTGAAAACAATT GAAGGGAGGTGTGCCCGTGGTAAACACAACAGGATTGAAGTAGGAAATCTGATTCTCTTCAATGAGTCTCTGGTGTTTGA AGTTCAGGGAGTAAGGAGGTATGCTTCATTCTTTGACATGTTGGAGGCAGAAAGCCTTGAAAAAGTTCTTCCAGGAGTTG AAAGTGTTGAAGAAGGTGTAAAGGTCTATCGGAGGTTTTTTACAGAAGAGAAGGAACGTGAAAATGGTGTTCTTGCAATC ATTTTTTCAAAACCTGCCCTTCAACCTTACATATCTCTGGCTAGCTTATTTTCTGGACTAAAGTATGAGGGTGTTCAAGG CCTTCTAGGTATAATTCATACTAGGGGGACAGTTCCTAATGCACTTCCACCACCAAGATCATCTCTATTAGCATCGTTTA ATTTGCCATGCAATCCAAATGAAATTTCCTTGAGTACTGGAGCTCGTGCGTTAGCCAAACATGCTTTTAGGAGTAGCAGT GGTTATTGGGGTTCTCTGGATGGGAATGATTCTAATAAAAATAGGCTTGCAATGAATGTCATTAACCACTTAATAACACA TTGTTGCTGGCTGAATATACATATTGTCCCACCACATGGAGGTGTCTTTGAAATAAGGGTAGCGGAAGGATATGGTGCAC GTTGGACAGAAGACGGAAGTAAGTTTATTGGATTTTTAGAGCCCTACATGCAAGATGGTCACTCAAAGGGATGGAAGCAC TAG
Protein sequence (LotjaGi3g1v0031000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
METRSNDCENGNACSSSAVKLSDCIEELVKFTLFSRSHLNLLNLSTQFCSTLLKDDPEPSPSSHSHPQDGLQGVPSYPLY KRLALALLRCIDTGTFWSPGYNVAMAHELESCSLQQKYNEWHKLIVEKGSEIVNILKSVRLELHVQEPFLTHLKDGLKTI EGRCARGKHNRIEVGNLILFNESLVFEVQGVRRYASFFDMLEAESLEKVLPGVESVEEGVKVYRRFFTEEKERENGVLAI IFSKPALQPYISLASLFSGLKYEGVQGLLGIIHTRGTVPNALPPPRSSLLASFNLPCNPNEISLSTGARALAKHAFRSSS GYWGSLDGNDSNKNRLAMNVINHLITHCCWLNIHIVPPHGGVFEIRVAEGYGARWTEDGSKFIGFLEPYMQDGHSKGWKH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 400 | 384 | 5.4E-154 | – | |
| Gene3D | 139 | 244 | 106 | 9.7E-35 | – | |
| CDD | 142 | 244 | 103 | 1.55208E-33 | – | |
| SUPERFAMILY | 142 | 245 | 104 | 2.49E-27 | ||
| SMART | 143 | 246 | 104 | 4.6E-6 | ||
| Pfam | 143 | 244 | 102 | 8.7E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0031000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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