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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0032500 |
| Transcript ID | LotjaGi3g1v0032500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Strictosidine synthase family protein; TAIR: AT3G59530.1 Calcium-dependent phosphotriesterase superfamily protein; Swiss-Prot: sp|Q9M1B4|SSL13_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 13; TrEMBL-Plants: tr|A0A1J7H869|A0A1J7H869_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0032500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3463044..3465914) extracted from Lotus japonicus Gifu genome v1.2.
GTATAGAATATGCTGGCTATTTTAACTCAACCTACCCTCAACCTGCACAACAATAGACAACCTACCTTCAACCTTAAATG CCATCATGAACAAAACATGCTTTGAATTCAACTCCCTCAAACCAATTCAAATATGAAACTCTCTCTAGTTCCACCAAGTT AGACAACACTCAAGTCTCAACTCAACACTTTTTTCTCACCTTGGTGTGCGCACAATGGAGAAGAAAAATCTGCTAAAAGA TGAGACATTTCTCCAACACCCACTTCTTCTTACCCTTGTTCTGCTTCTGGGTTTCTTCGTGATGGACCCTTTTCATCTGG GTCCAGTTTCAGAGCATGAATTCAGACCCGTGAAGCATGACATTGCACCATACCACCAAGTCATGGGGAACTGGCCTAGG GACAACGTGAGCAGATTAGGACTACATGGGAAATCAGAGTTCAAGGATGAAGTGTTTGGACCAGAATCTCTGGAGTTTGA TAACATGGGTCGTGGTCCTTATGCTGGTTTAGCTGATGGTCGTGTTGTTAGATGGATGGGGGAGGAACTTGGTTGGGAAA ATTTTGCATTTGTCACATCCAATTGGTAACTCTCATATTCATCATCACCCACAATTATCACAAAAAATTTAACAAAACAC TTGATTCTCATAAAGTTTTGTCACTTAGCATGTTTGAATTATATCATTTTTCCTCAAAATGCACTCATAAGTTTATTATT CTATAGAAAAACACCAAAATGGGCAAGCTTTTACACATTCTTAAATGTTTATATTCCATCTCAAGCTAATTAAATGGACT TTATCATGGGCCTTTGGCCCTCCATATTATCCAAAAGAAATGGACTCTATCAAGTCAATTTTTACATCAAATAGTACAAA CATTTTACACTCGTCACATTTTTTTCTTTATTTTTTAGTTTTTTACATTACATTATATATCACACATGAGAAGATGAGAA GTGAATTATATCAGTCAATTTTTTATGCAGCCACTATAATGAAGGAGTCTAAGGCTCTCGGCCTAAACATTTGACAGATA ATATTCAAAAAAACATGTTTTGCATGTGATTTGTTAGACTTAAAAACAGAATTGTCTGATATTCATTCTAAATATGAGAT TTCTTGACTGCAGTAGTGCAGTGACTACACCAAAAATTGACAGTGAACTCAGATCCCACTTTTTTCTCTTCTTTTCCTTG CTCTTTTTCTGTGGGTCTACATGTCTACTTAATGACTTTTGGTGCCTAAAAGCCTATTATAGCTTATTCGTAGAATTAAA TAATCAATTATAGTAGAACATACACTTGATTATTCTATCTAATTCATGCTAATGAATGGCACTTGGTATTTTGGTTTCGT GATTTTGAAAGGACTGAGAAGCAATGCGTGAGGGGGAATGATTCAACCACTGCCAAGCAATGGAAGCATGAGAAAACTTG TGGGCGACCACTTGGCCTAAGATTTGATAAAGAGAGTGGAGATCTATACATAGCGGATGCATACTATGGGCTTCTTGTGG TTGGGCCAAATGGTGGACTTGCTACATCATTGGCAACCCATGTTGAAGGAAAGCCCATTCTCTTTGCAAATGACCTTGAC ATTCATAAGAATGGATCCATCTTCTTCACAGACACTAGCACAAGATACAACAGAGTGTAACACCTTCTTCTATTGTCATT TTTGTGTTATTCATTGTCAATTTTAAAAGGCTAATGATGGGTGTATACTTGTTTACAGGCAACACTTTTTTATATTGTTG GAAGGAGAATCTACTGGTAGACTTCTGAGATATGATCCTCCAACTAAAACAACCCATGTTGTGTTGGATGGTCTTGCTTT CCCTAATGGTGTGCAATTTTCCAAAGATCAGTCCTTTCTCCTCTTCACTGAAACCACCAATTGCAGGTGAGATCACTATC TTCATACAAACAACATTCTCTGTGATACACTTTTTTCATACACTTTTTCTATGCAATGAAATTCACATGAAAGATTAGCA AGTAAGAGTGTTTTCCCCTTCAAGTGTCTGCTATAGAACCTTGATTATAGTGAATTTCAAAAAAATCGATGATATTGTGA ATTATAGTAAGTCGTCTTTTGATATTATATGCAATTCTATTTCGTTGAAACAAATAAACACGTAACTTAAGGATCTACAT AATTTAAAGACTACTCATATGTAAACATACATATTTGATATGTGTTCAAATATTTGTGGTGGTTAAAAATCGCTACTAAC ATATATCTCAGCTGAGTGACATCCAGTTTATGTATGCTTAAATATCATTATTGAAATATTAATTCCTTAATGACATGACA GGCTAAGAAAGCTTTGGATGGAAGGTCCAAAATCAGGGACAGTGGAACATGTAGCAGACCTCCCAGGTTTCCCAGACAAC GTGAGAATAAATGAGAAGGGTCAATTTTGGGTTGCCATAGATTGTTGTCGCACTCCAGCTCAAGAGGTTCTGAGCAACAA TCCATGGTTGAGGAACATCTACTTCCGCTTACCCATCAGGATGAGCTTTCTTGCTAGAGCCATGGGGATGAAAATGTTCA CAGTGATCACGCTTTTTGACGATGAAGGGAAGATTCTAGAAGTTCTTGAAGATAAAAAAGGGAATGTGATGAAGTTGGTC AGTGAAGTTAGGGAGGAGAAAGGGAAGCTTTGGATTGGAACCGTGGTTCATAACCACATTGCTACCCTGCCTTATCCTTA AAATAAATCAAACCTTATTGTTACTTTAGTATTGCATCTTTGTGTGTTCTTGTTGATCTCACACTTTGTAGTGTGTATTT AGGAGTAGGATTTCCATTTGGTCGAATGTAATGATGTTATTGATCATCATTAATAAAATAGACTTCATGAA
CDS sequence (LotjaGi3g1v0032500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGAAAAATCTGCTAAAAGATGAGACATTTCTCCAACACCCACTTCTTCTTACCCTTGTTCTGCTTCTGGGTTT CTTCGTGATGGACCCTTTTCATCTGGGTCCAGTTTCAGAGCATGAATTCAGACCCGTGAAGCATGACATTGCACCATACC ACCAAGTCATGGGGAACTGGCCTAGGGACAACGTGAGCAGATTAGGACTACATGGGAAATCAGAGTTCAAGGATGAAGTG TTTGGACCAGAATCTCTGGAGTTTGATAACATGGGTCGTGGTCCTTATGCTGGTTTAGCTGATGGTCGTGTTGTTAGATG GATGGGGGAGGAACTTGGTTGGGAAAATTTTGCATTTGTCACATCCAATTGGACTGAGAAGCAATGCGTGAGGGGGAATG ATTCAACCACTGCCAAGCAATGGAAGCATGAGAAAACTTGTGGGCGACCACTTGGCCTAAGATTTGATAAAGAGAGTGGA GATCTATACATAGCGGATGCATACTATGGGCTTCTTGTGGTTGGGCCAAATGGTGGACTTGCTACATCATTGGCAACCCA TGTTGAAGGAAAGCCCATTCTCTTTGCAAATGACCTTGACATTCATAAGAATGGATCCATCTTCTTCACAGACACTAGCA CAAGATACAACAGAGTGCAACACTTTTTTATATTGTTGGAAGGAGAATCTACTGGTAGACTTCTGAGATATGATCCTCCA ACTAAAACAACCCATGTTGTGTTGGATGGTCTTGCTTTCCCTAATGGTGTGCAATTTTCCAAAGATCAGTCCTTTCTCCT CTTCACTGAAACCACCAATTGCAGGCTAAGAAAGCTTTGGATGGAAGGTCCAAAATCAGGGACAGTGGAACATGTAGCAG ACCTCCCAGGTTTCCCAGACAACGTGAGAATAAATGAGAAGGGTCAATTTTGGGTTGCCATAGATTGTTGTCGCACTCCA GCTCAAGAGGTTCTGAGCAACAATCCATGGTTGAGGAACATCTACTTCCGCTTACCCATCAGGATGAGCTTTCTTGCTAG AGCCATGGGGATGAAAATGTTCACAGTGATCACGCTTTTTGACGATGAAGGGAAGATTCTAGAAGTTCTTGAAGATAAAA AAGGGAATGTGATGAAGTTGGTCAGTGAAGTTAGGGAGGAGAAAGGGAAGCTTTGGATTGGAACCGTGGTTCATAACCAC ATTGCTACCCTGCCTTATCCTTAA
Protein sequence (LotjaGi3g1v0032500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKNLLKDETFLQHPLLLTLVLLLGFFVMDPFHLGPVSEHEFRPVKHDIAPYHQVMGNWPRDNVSRLGLHGKSEFKDEV FGPESLEFDNMGRGPYAGLADGRVVRWMGEELGWENFAFVTSNWTEKQCVRGNDSTTAKQWKHEKTCGRPLGLRFDKESG DLYIADAYYGLLVVGPNGGLATSLATHVEGKPILFANDLDIHKNGSIFFTDTSTRYNRVQHFFILLEGESTGRLLRYDPP TKTTHVVLDGLAFPNGVQFSKDQSFLLFTETTNCRLRKLWMEGPKSGTVEHVADLPGFPDNVRINEKGQFWVAIDCCRTP AQEVLSNNPWLRNIYFRLPIRMSFLARAMGMKMFTVITLFDDEGKILEVLEDKKGNVMKLVSEVREEKGKLWIGTVVHNH IATLPYP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 5 | 407 | 403 | 1.1E-226 | – | |
| PANTHER | 5 | 407 | 403 | 1.1E-226 | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 31 | 407 | 377 | - | – | |
| Gene3D | 69 | 406 | 338 | 3.9E-114 | ||
| SUPERFAMILY | 76 | 404 | 329 | 3.49E-48 | – | |
| Pfam | 197 | 283 | 87 | 7.8E-29 | ||
| Coils | 367 | 387 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Strictosidine synthase activity | Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = secologanin + tryptamine. |
Expression pattern of LotjaGi3g1v0032500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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