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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0033700 |
| Transcript ID | LotjaGi3g1v0033700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin-like protein; TAIR: AT2G43290.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|O22845|CML5_ARATH Calmodulin-like protein 5; TrEMBL-Plants: tr|Q9SCA1|Q9SCA1_LOTJA Calcium-binding protein; Found in the gene: LotjaGi3g1v0033700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3561489..3562181) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCAACTATTTTGCATAGGATTTTCCTTCTTTACAACCTCCTAAATTCATTCCTCCTCTCTCTTGTCCCCAAGAAGGT GATAGCCTTCCTCCCCCAATCTTGGTTCCCCCATCAAACCCCTTCCTTTTCCTCCTCCTCCTCATCATCATCATCAAGGG GGAACCTTGTAATACAAAAAACAACAGACGACTGTGACCCCTGCCAGCTCCTCCCTTTAGATACGTCCCTAATACCAAAA ATGGACCCCACCGAGCTCAAGCGTGTTTTCCAAATGTTTGATAGAAACGGGGATGGCCGGATCACGAAAAAAGAGCTCAA TGACTCCCTTGAGAATCTTGGAATTTTCATACCTGACAAGGAGCTGACCCAGATGATCGAGCGGATTGATGTGAACGGAG ATGGGTGTGTCGACATTGATGAATTCGGGGAGCTTTACCAGTCCATCATGGACGAGCGTGATGAGGAGGAGGACATGAGG GAGGCTTTCAACGTCTTCGATCAGAACGGGGATGGCTTCATCACCGTGGAGGAGTTGAGGACGGTTCTGGCTTCACTCGG GATCAAACAGGGGAGAACCGTGGAAGATTGCAAGAAGATGATCATGAAGGTGGATGTTGATGGAGATGGTATGGTGGATT ATAAGGAGTTCAAGCAAATGATGAAAGGTGGTGGCTTTAGCGCTCTCACTTAA
CDS sequence (LotjaGi3g1v0033700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCCACCGAGCTCAAGCGTGTTTTCCAAATGTTTGATAGAAACGGGGATGGCCGGATCACGAAAAAAGAGCTCAA TGACTCCCTTGAGAATCTTGGAATTTTCATACCTGACAAGGAGCTGACCCAGATGATCGAGCGGATTGATGTGAACGGAG ATGGGTGTGTCGACATTGATGAATTCGGGGAGCTTTACCAGTCCATCATGGACGAGCGTGATGAGGAGGAGGACATGAGG GAGGCTTTCAACGTCTTCGATCAGAACGGGGATGGCTTCATCACCGTGGAGGAGTTGAGGACGGTTCTGGCTTCACTCGG GATCAAACAGGGGAGAACCGTGGAAGATTGCAAGAAGATGATCATGAAGGTGGATGTTGATGGAGATGGTATGGTGGATT ATAAGGAGTTCAAGCAAATGATGAAAGGTGGTGGCTTTAGCGCTCTCACTTAA
Protein sequence (LotjaGi3g1v0033700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPTELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELTQMIERIDVNGDGCVDIDEFGELYQSIMDERDEEEDMR EAFNVFDQNGDGFITVEELRTVLASLGIKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 150 | 150 | 3.1E-103 | ||
| PANTHER | 1 | 150 | 150 | 3.1E-103 | – | |
| ProSiteProfiles | 1 | 36 | 36 | 14.625 | ||
| Gene3D | 2 | 32 | 31 | 1.1E-10 | – | |
| SMART | 5 | 33 | 29 | 1.0E-4 | ||
| SUPERFAMILY | 5 | 144 | 140 | 1.65E-43 | ||
| Pfam | 5 | 67 | 63 | 9.0E-14 | ||
| CDD | 5 | 62 | 58 | 6.22403E-15 | ||
| ProSitePatterns | 14 | 26 | 13 | - | ||
| Gene3D | 33 | 66 | 34 | 3.0E-7 | – | |
| ProSiteProfiles | 37 | 72 | 36 | 12.812 | ||
| SMART | 41 | 69 | 29 | 5.3E-4 | ||
| ProSitePatterns | 50 | 62 | 13 | - | ||
| Gene3D | 68 | 106 | 39 | 2.7E-14 | – | |
| ProSiteProfiles | 74 | 109 | 36 | 17.387 | ||
| Pfam | 76 | 142 | 67 | 5.6E-13 | ||
| SMART | 78 | 106 | 29 | 2.4E-7 | ||
| CDD | 82 | 142 | 61 | 1.89369E-16 | ||
| ProSitePatterns | 87 | 99 | 13 | - | ||
| Gene3D | 107 | 142 | 36 | 3.6E-10 | – | |
| ProSiteProfiles | 112 | 147 | 36 | 15.546 | ||
| SMART | 116 | 144 | 29 | 4.3E-5 | ||
| ProSitePatterns | 125 | 137 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi3g1v0033700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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