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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0035500 |
| Transcript ID | LotjaGi3g1v0035500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Post-GPI attachment to proteins factor 3; TAIR: AT1G16560.1 Per1-like family protein; Swiss-Prot: sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3; TrEMBL-Plants: tr|I1KIA1|I1KIA1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0035500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3805331..3808754) extracted from Lotus japonicus Gifu genome v1.2.
TTTGATGCAACCATTTTTTAATTTCCCTTATTATAGCATCGAGGAAATCATCATTGCATTCAAATTCTATAAGTTACGAC ACCCTTTATGATTTAAGTTCCTTATTTTTGTTGGATTTCTCTGAACTCTATTTTCACTTCTTGTTTTGTTATGGATATCA GGGATTGTATAAGACAATGTCAGGAAACTGGATGTGTTGCACAAAGTTGCTTTCCACACTGTAAATTTCCATCAGATGGA GAACATTTTGATCGTCCATGGTACATGCAAGAACCACTCTATTTGCAATGGAAAAAATGGGATTGTCAAAATGACTGCCG ATACCACTGTATGCTTGATAGAGAGAAAGAAAGAAAGTTACTTAACCTTGTTCCTGTCAAGTATCATGGTAAATGGCCAT TCGCGCGTATTTATGGGATGCAGGTTTGTTAATGAAGAAGCTGTGCACCTTATGTTTTCATTGTCCTTAAAAACCTCTTG TTTTAAGAACTTGCCTGTATATCCTTTTATGTAGGAGGCTGCTTCCGTGGCTTTCTCAGCTCTCAATCTTGCAATGCATT TTCATGGTTGGGTCTCCTTTTTCATTCTTTTGTACTATAAATTACCTCTAAAAGATGGAAAGGAGGCATATTATGAGTAT GCTGGTTTGTGGCATATATATGGGCTCCTATCACTCAACTCCTGGTTCTGGAGCGCTGTTTTCCATAGTAGGTAAGTTAC ATATGCAGATATTTTCAGCATTTTGTACTGATTCTAAATATCTTAGTGTTGTTAGTGAAGTCATTTTGACTTTGATATTT CTAAGAATGAATACCTTGCTATATGAGTTTTGACCTTAAAGAATGATTTGATTTTAGGTAGTGTCACTGTCAATCAAGCT GTCTTTGGTTGCTTGTTATTGAAGTGATACTTCTTAGTTCTTAAATTGAATCACAATGATGTGACTTAAATTGAATCACA ATGTATACATATGAGATAATAATTAGGAAGCTGTTTTTTTAGGGTTTGTTTGATTACTATTTTGTAAAAAAGTTTAGTTT TTGAAAAGTGAAAAAACATAACTTGTTTGATATAAATTGTTTTCGAAAACAGTTCTTAAAATCCATTCTTATTTTCAGTT TTCCAAACTCAAAACTCAAAATATCTCAGATGTTTTCTATTGTTGTTTTCAGTTTTCAAATCAAAGGTCTTTCAACTTTA TAAAATATCTCATTCAAACTGTTCTATTCTTCTCTTCTTCTGAAAAACTGGTTTTAAAAATTGTTTCTGAATAGTGAAAA TAGTTTTTAAATTCAGAAAACTGAAAAGAGAACAAACAAGCCCTTAGTAGACATTTCTAATACTCCCCCTTTCTAAGACT CTTCAAAATTTATGAATTGCTGTTTTTTTTTGAAAATTAATAACCTTACTTAAAAATAATATTTAGTAATCCAAAATATA TATAATTGGTTTAGTTAAAGCTAATGATGATAGTGTTCTGAATTATTCTTGTCCTCTATTGTTTTCATGAAATTGACTCA CTCTAGTTTTAATGTCACACCTGAACTGTGTAAAGAAAAGAAACATGTTTCATTAGCTGCTGAGTATAGCAATATATATA AGTCTCTTAAAAGTTTCGTGTACATCCTAATTTTTTTCTATATGTTCTGTTGTACTGCAGAGATGTGGATCTAACAGAGA CACTAGACTACTCTTCTGCTGTGATTCTTCTTGGATACTCCCTCATTTTAGCCATCTTACGATCCTTCAATGTTAGGGAT GAGGCTACCAGAGTTATGGTTTCTGCTCCATTGATTGCTTTTGTGATCACCCATGTTATGTACATCAACTTCTATAAACT AGATTATGGTATGTCCTGTCTTGTTGCCTTTATATTACTGCTGAGACCAAGAGCTGAATGTAGGATCCATGTCTTCTTTA TTTCTCTTTTTATGAAAAACTTACTTTGAGCCATCTGTTAATTATCTATGTCATTCACTTCTGTAGTTTCTTCTTTTCAT TGCAAGATGAGGAGGTCTAGCAAAAGACTTTCTAAAACACACTCTCCAACACACTTCATGTTATTGGTTTATTTTTTAAA AAGTGAACATATTTGCCTCACTCTTTAAAACGTTTTCATTTTTGAAAAACACAAAACAATCACATGTAGTGTGTTTAAAA AATAGTTGATAGCATTCCTCTAGCAAAATTATCGACAAGATTTTTATCATTTTTCTTTCAACCCACTCTTTGTGCTTGCT GCAATAAGATCTGCTTTGGAGAAGTCTGTAGATTGGATTTGATTTGAGTAGCTACCGTCATAGTTTTTAGACATTAAGTA ACTTACTCATATCATGTGATGTATCACATATGATTTTAATTATGCAATGCATGTATGAACAATGTGATTTAGTATCACCA TCACGAACACATGATTCAACAATTCTTCTTCTTCTTGTTGTTGTTAGTTTGAAACAGAAGCTTTACACAATTATTCATTC ACTCTATAGTCTATACTTTTTCTGACTTCTGAGACAAAGACTTCATACGGCCCCTTTATGTGGCTCGTAAGGAAAAGAAG AAGGGGAAGGAAAGATGTTACCTGCAGAACATTGCACTGTTTTGTATATCATTCAATGTCCGCATTATACATGGAAAGAA CTACCATTTAGAAGGAGCACACTATGAAACACGCGTTCACTTCATTGCTTGTGTGTTGTGGGTTTTTCATTTCAGCTTTT ATATATGTTGATAGATGACTCAATTATGGCATGATTATAATTTTGTTTGTGATACTTATGATTAAGCTGTTTTGTCAATT CCTGGTTTAAAATTATGACATTAAACACTATGAATCATTTATATGATATATTTCGAAGTTATTTTTAATTGTCTCTGAAT TTTACAATTTGATACAATTTACTGCTCATGATTTAAAAAGTTAGAAAGATAGTTTACAATTTTCATAGGAATTTGATACC TTAGCTTCTCTTTAGCAAAATTGAAGTTATGGTTTATGTGCTCCTAATGTGAGACCTTTATGTGCACTTGAGAGAGAGAA GTTTTATGTTTAGCTATCATCACTATGTCTGATTAACCCCTTTTCATTTTTCTCCTTTTGTGACTATTTTGATGGCGTTC TCAATTGAACTGTGCAGGATGGAATATGATAGTTTGTGTAGTGATGGCTGTGGTGCAACTTGTCATTTGGGCAGTTTGGG CTGGTCTTAGTGGCCATCCTTCACGATGGAAGCTATGGCTGGTTGTTATTGCTGGTGGCCTTGCAATGCTTCTAGAAATA TATGATTTCCCTCCATATGAAGGACTTTTGGATGCACATGCTCTTTGGCATGCCACCACTATTCCTCTAACTTACATTTG GTGGAGTTTCATTAGGGATGATGCTGAGTTTCGAACCTCCATTCGGGTTAAGAAGGCCAAGTAA
CDS sequence (LotjaGi3g1v0035500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGAACCACTCTATTTGCAATGGAAAAAATGGGATTGTCAAAATGACTGCCGATACCACTGTATGCTTGATAGAGA GAAAGAAAGAAAGTTACTTAACCTTGTTCCTGTCAAGTATCATGGTAAATGGCCATTCGCGCGTATTTATGGGATGCAGG AGGCTGCTTCCGTGGCTTTCTCAGCTCTCAATCTTGCAATGCATTTTCATGGTTGGGTCTCCTTTTTCATTCTTTTGTAC TATAAATTACCTCTAAAAGATGGAAAGGAGGCATATTATGAGTATGCTGGTTTGTGGCATATATATGGGCTCCTATCACT CAACTCCTGGTTCTGGAGCGCTGTTTTCCATAGTAGAGATGTGGATCTAACAGAGACACTAGACTACTCTTCTGCTGTGA TTCTTCTTGGATACTCCCTCATTTTAGCCATCTTACGATCCTTCAATGTTAGGGATGAGGCTACCAGAGTTATGGTTTCT GCTCCATTGATTGCTTTTGTGATCACCCATGTTATGTACATCAACTTCTATAAACTAGATTATGGATGGAATATGATAGT TTGTGTAGTGATGGCTGTGGTGCAACTTGTCATTTGGGCAGTTTGGGCTGGTCTTAGTGGCCATCCTTCACGATGGAAGC TATGGCTGGTTGTTATTGCTGGTGGCCTTGCAATGCTTCTAGAAATATATGATTTCCCTCCATATGAAGGACTTTTGGAT GCACATGCTCTTTGGCATGCCACCACTATTCCTCTAACTTACATTTGGTGGAGTTTCATTAGGGATGATGCTGAGTTTCG AACCTCCATTCGGGTTAAGAAGGCCAAGTAA
Protein sequence (LotjaGi3g1v0035500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQEPLYLQWKKWDCQNDCRYHCMLDREKERKLLNLVPVKYHGKWPFARIYGMQEAASVAFSALNLAMHFHGWVSFFILLY YKLPLKDGKEAYYEYAGLWHIYGLLSLNSWFWSAVFHSRDVDLTETLDYSSAVILLGYSLILAILRSFNVRDEATRVMVS APLIAFVITHVMYINFYKLDYGWNMIVCVVMAVVQLVIWAVWAGLSGHPSRWKLWLVVIAGGLAMLLEIYDFPPYEGLLD AHALWHATTIPLTYIWWSFIRDDAEFRTSIRVKKAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 276 | 276 | 2.1E-149 | ||
| PANTHER | 1 | 276 | 276 | 2.1E-149 | – | |
| Phobius | 1 | 57 | 57 | - | – | |
| Pfam | 4 | 264 | 261 | 2.3E-87 | ||
| Phobius | 58 | 81 | 24 | - | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 82 | 92 | 11 | - | – | |
| Phobius | 93 | 115 | 23 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 116 | 126 | 11 | - | – | |
| Phobius | 127 | 145 | 19 | - | – | |
| TMHMM | 131 | 150 | 20 | - | – | |
| Phobius | 146 | 156 | 11 | - | – | |
| TMHMM | 157 | 176 | 20 | - | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| Phobius | 177 | 181 | 5 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| Phobius | 182 | 205 | 24 | - | – | |
| Phobius | 206 | 211 | 6 | - | – | |
| Phobius | 212 | 230 | 19 | - | – | |
| TMHMM | 215 | 232 | 18 | - | – | |
| Phobius | 231 | 241 | 11 | - | – | |
| Phobius | 242 | 260 | 19 | - | – | |
| TMHMM | 242 | 260 | 19 | - | – | |
| Phobius | 261 | 276 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. |
Expression pattern of LotjaGi3g1v0035500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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