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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0035600 |
Transcript ID | LotjaGi3g1v0035600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein,; TAIR: AT2G43000.1 NAC domain containing protein 42; Swiss-Prot: sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1; TrEMBL-Plants: tr|A0A0L9UIA7|A0A0L9UIA7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0035600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3812356..3814680) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAAGAGAAAAGAGAGATAGAATCAAGGAGGAGCTAGCTAGATAACAATATGGTTTTAGATAATTTCAAGAAGGATAT TGATTGTGATGAATATATGGAGGATGAAGAAGTTCCACTTCCCGGGTTCCGTTTCCACCCCACAGATGAAGAACTTCTAG GTTTCTATCTTCGCCGGAAGCTTGACAACAAACCCATTACTCTCGAACTCATCAAACAGATTGATATCTACAAATATGAT CCATGGGATCTTCCAAGTATGTTTGCTACAAATTGTTCCTCTCTTTCTTTACCTTCAAATCTTGTAGTTAGTTTCTTGAG AGATCAAAAAATGAAGAACTAATAATTGGACTTTTATGAATTTTACCTAACATCATCAAGAAACTATCAACACACACAAA TTATCATTTTTAAACACAAGCACATAGTTCAATTAACAAAGGGTAATATTCTGGCATATGCTTACCTTTATATACATGTT TTGTTTATTATTGATTGAAAAATTGGATCCAACCAAATTTAAACAGTTTCATGGCTGCACCAGTTTTTAAGACTGATTAT ATTATTAATAACATATTTAATTTAAATATTACAATAAGTAAACACACACACACATATATATATATATATATATATATATA TATATATACGTTATAGATTGACCGGTTTTAAAAATAGTTCATCATATAATTTGTTTGTACATATGCAGAAGCAAGTAGTA GTGGTGGAGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGGAAGTATAGGAACAGCATAAGGCCCAACAGAGTCACT GGCTCTGGGTTCTGGAAAGCAACAGGGATAGACAAGCCAGTGTACTCACTCGGAGGAGAAGGCAATGACTGCATAGGACT CAAGAAAACACTGGTTTACTACCGCGGCAGCGCAGGCAAAGGCACCAAAACTGACTGGATGATGCACGAGTTTCGCCTTC CCTCCAATGCTGATCACACCAACCCCCATAACAGCAATGCTGCTGTTGCCCAAGAAGCTGTATGAAACTAATCTTGATCT AAAACTTCTCATATGCATATAGCTTGATTTTTATTTTTATTTTTATTTTTATTTTAAAAGATGCATATAGCTTGATACTA AAGGTTTTGTTATCCTTAAATTAAACCGTGAAAAATTGCATGACTAATGTTGTCACGATATAATCAAAGAAACACTTCTA GAACCACATTAATATAATTAAGTGCAATTGTAGATTGTTAGAAATATATATAAAGTCATTTATGTGTTATAACCTAACAA AAATTATTTGTGTTTGTAGTGGTCAGGGCGGTTTGTGGCTGTCAGGTGTCGATAATGTAAAAAAAAACGGAATAGATCAA TCAACGCTAGTAACCTAAGAACATAAACTTTTTGAATATAGAGTTGTTTCATGATTTTTAAAATTTTAATGTACATATAT GCATTGTTTATGCTTAAATTGGACTTTTATGCGAGGGGCGTGTTGTTCAGAATATAGAAAAACTTTTTCCATGTCTCGTG ATTGTTGCTCTCTTGCATATTTAACCAATAAAAATTATTTTTAATTAAGTGTTTGGAATATGTTTATGATGTAGATTATA ATTTCTCAACTTTTTCTATTACATCACATTTCTCTCTTGTATTCATTTCTTCCTTGTTGTAATTGTGAGCATATCTTAAT TCTTTTGCTGTATGTGCAGGAAATTTGGACATTGTGTCGAATTTTCAAGAGAAGTATGTCACACAGAAAGCAGTACACAC CCGATTTGAGACAGTTAGCAGCTAAGCGTGCATCCACTGACAAGATCACCAAAATGAGAAGTTTGGAGTGTGATTACACT AATCAAGAAGCATACATAAACTTTGGTACAAACTTTGGTCATTATGCTAATGATCATAGGCATGTGATTAACAACAACAC AAGCAGTGATCAAAGGCATCATCATCAGGTTCATGTAGGTCTGCTGAACTCTCCGGCGGCACAACCACCTCGATTATCGG CACCGTCTTCAGACTTCTGGAACAGCCCTGCGGCCAATGACTTCTTCACGTTTGAGAATTGGGACGAGCTTGGATCGGTT GTGAAGTTTGCTGCTGATTCGCCTATGATGTAAATAACCGTATGTGTTGTTTCTTGATTAGTTGTTAGAATGGAATAGGA ATAATATATCATACTCTCTCCGGTCCTATTTATAAGCAACAAAAAAAAAATTCACATAGTTTAAGAAATGTAGTTAAACT AGGTAAAATGCATTAAATATGTCTTGAATCAAAATAAACTTCCAAAATTACCCTTTGTTATTAATGTTGGAAAGTGAGAA AGAGA
CDS sequence (LotjaGi3g1v0035600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTAGATAATTTCAAGAAGGATATTGATTGTGATGAATATATGGAGGATGAAGAAGTTCCACTTCCCGGGTTCCG TTTCCACCCCACAGATGAAGAACTTCTAGGTTTCTATCTTCGCCGGAAGCTTGACAACAAACCCATTACTCTCGAACTCA TCAAACAGATTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGCAAGTAGTAGTGGTGGAGAGAAGGAGTGGTAC TTCTTTTGCAAAAGAGGGAGGAAGTATAGGAACAGCATAAGGCCCAACAGAGTCACTGGCTCTGGGTTCTGGAAAGCAAC AGGGATAGACAAGCCAGTGTACTCACTCGGAGGAGAAGGCAATGACTGCATAGGACTCAAGAAAACACTGGTTTACTACC GCGGCAGCGCAGGCAAAGGCACCAAAACTGACTGGATGATGCACGAGTTTCGCCTTCCCTCCAATGCTGATCACACCAAC CCCCATAACAGCAATGCTGCTGTTGCCCAAGAAGCTGAAATTTGGACATTGTGTCGAATTTTCAAGAGAAGTATGTCACA CAGAAAGCAGTACACACCCGATTTGAGACAGTTAGCAGCTAAGCGTGCATCCACTGACAAGATCACCAAAATGAGAAGTT TGGAGTGTGATTACACTAATCAAGAAGCATACATAAACTTTGGTACAAACTTTGGTCATTATGCTAATGATCATAGGCAT GTGATTAACAACAACACAAGCAGTGATCAAAGGCATCATCATCAGGTTCATGTAGGTCTGCTGAACTCTCCGGCGGCACA ACCACCTCGATTATCGGCACCGTCTTCAGACTTCTGGAACAGCCCTGCGGCCAATGACTTCTTCACGTTTGAGAATTGGG ACGAGCTTGGATCGGTTGTGAAGTTTGCTGCTGATTCGCCTATGATGTAA
Protein sequence (LotjaGi3g1v0035600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLDNFKKDIDCDEYMEDEEVPLPGFRFHPTDEELLGFYLRRKLDNKPITLELIKQIDIYKYDPWDLPKASSSGGEKEWY FFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNADHTN PHNSNAAVAQEAEIWTLCRIFKRSMSHRKQYTPDLRQLAAKRASTDKITKMRSLECDYTNQEAYINFGTNFGHYANDHRH VINNNTSSDQRHHHQVHVGLLNSPAAQPPRLSAPSSDFWNSPAANDFFTFENWDELGSVVKFAADSPMM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 11 | 306 | 296 | 2.7E-124 | – | |
PANTHER | 11 | 306 | 296 | 2.7E-124 | – | |
SUPERFAMILY | 19 | 183 | 165 | 3.14E-56 | ||
ProSiteProfiles | 22 | 183 | 162 | 54.543 | ||
Pfam | 24 | 152 | 129 | 1.4E-36 | ||
Gene3D | 31 | 189 | 159 | 1.0E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0035600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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