Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0035800 |
| Transcript ID | LotjaGi3g1v0035800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|K7MDK6|K7MDK6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0035800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3851472..3853849) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTCTCTCTGTCTCCTATTTATTTCTCTGTGTGTGTGTGTGTTCCTATCAGGATAACTAAATAAGTTTTCTATCTG AATTGTTGTGATTTGTGGGTGTCTTGGTTAGTGAGTTATGGGTTCATTCAGTTGTGTTGTGTAATTGGCTTTTACAGTGT CTTGTGGCTTGTGCCTTGATGCGAAGGAGAGGTTGTTTACATTTCTTTTGGTGTCGCTGTCTTTTTGTGGATGCAATTTG CTGTTGAGGGGTGTAGTTTTTAACTATGTTGTTAATTCTTTGGAAAGTATTCATAGTCTTATGTTGTTGGGGGTGGCTTG TGTCTTGAGATTTTTCTGTTGGGGTGTCTTTCATTTTTTAGGGTTGTCTGATCTAGTGAGAAGAATTGTTTTTTACCAAT ATTAACTTGGTTAAATAATTTATTTTTGAATTAAAAAAAATTATGATTTGTGGATTCAATTTTTTTGTAAATTTATCAAT GGCTATCATCATTCTATCTTACTATTACTTTTTTTTTGAAACAGGAACTACCATGGATTCAAACATTGCGAATGATAAGT TTTTGAGTTTGTTGAATGTTCGTCCAGGTCCAGACCTGATCAGTTATCTACCTGAAGGCATTTTGTTCACTATCTTGTCT CGACTTCCAATTAGAGAAGTTGTTCGAACTAGTTTGTTATCTACTAAATGGATTGATCTATGGAAATCCATCACCAAAGT ATATATTGATGACCTTGCATTCCATAACAAAGTGACAATAAACAAGGAAGACATGGCTAAATTTGTGAACTTTGTGACTG AAGTACTTCTTCACCTCAACAATTCAACAATTGAGGACTTCTCTCTCATGCTATCCAGCCAACAATATGATCCATATGTG ACTACTTCATGGATATCATGTGCATTGAAAAAGCAAGTTAAAAAACTTCACATTCAATTTGCAGATCATGCCTCCATCTC ATTATGCTCCCCATCCAACTACAATTTTCTTTTGGAATTAGTGCTTGACATGGGTTGGACCATTGAAATTCCTTCCATTT ACTCTCTTCAGTTTTTGCAAGTGCTCAGACTTCATAAGGTTAGAATACTCAAAACTCATAATAAAGATTCCAATGATATA GTTCTGAACTTTCCATCACTCAAAGTGTTTGAAGCAAGACAATGTGTATGGTCCAACATCATTCTACAAGCACCAATGTT GGAAAGTTTTTCCTTTATGATATTAGACAATTGTCTATCGCCTACTGAATTGAAGAAACTACATGGTTCTTATTTCAAGA TTTATGCTTCTCCTTTGGCATTCTCATACCATGGTCATCTACTGCATGATCTCATTCTATTAGACCCTCCATCTTCTGTC AAAGCTTCCACTGTGGAACTCTTTTTTGATGAATGTATTGAGGAGAGGATTCAAAAAACCAGAATCGGGTTGGAAATGCT TCTAAGTCATTTCCATGAAGCTGAAAGCCTAAAATTGAAGCTTAACAATGTATGTTTCCTTCTCCTTACCCAACTTTACA AATTTGTTGCTAAAGTGATGGTAATTACTTGCAGGTGTTAGTTTGTCATGAAAAGATTGATTTATTATAGAAAGCACAAT AGCCTTACCCTAAGGGAAAATTATTAAATTCATTTGAAACTACTTAAATATTATATTAATGAAAGCTCATCTATTTATAG ATTTTCATGCTATATTGTTCTTACATCCAGTTCATTCAAGGGCCAAATGATCATTATTTTGCGAATCCACCTATATTCGA AAGGTTGGTTTATTTGGAAGTGGAAAGAGTTGGAGCTGATACATTGTTTAATCTACTCAACAATGCAAAATATCTCAGGA CTTTAGTGCTGAAAAATGTAAGTTTGTTTGGAGTTCAAGTTGTGTCAATTATTCTTATTCTTTGCTTACAAATTAGCGGC GAACTCACCAAATAGTTTTTTTCTTTTTCAGTCAACATTTTCTTTTAAGGAAAATATCTTGACTTCTGCAGCAACACCTG AATGTTTTAATTCTAGCCTTAAGGATGTTCAATTCAAACAGTTTAGAGGGGTTTTTTGTGAATTTACTTTGGCAAAGTTT GTGCTAAAGAATGCAACGATCTTGGAGAAGATGACTATCTTCCCACATTCGCTACTACGAGATTCAGATGCGGGGTTTGA AGCAGTTAAATGGAAGATACTATCATATCCAAGAAAATCTAGTAGTGTTTCAATTGAATTTCCTATCCAATTTTAAGAGT ACAAATGGAAACTTCATTCTAAATCCTTTACATAAACAATATAGAGTAGTTGTAATTATATTGTCTATGTTGTCTATCTA GCTACCTTAGCTATCTTCTGTTGAATGCTTGTTTATGAACATTGCTAGATTGATCATG
CDS sequence (LotjaGi3g1v0035800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAAGGAGAGGAACTACCATGGATTCAAACATTGCGAATGATAAGTTTTTGAGTTTGTTGAATGTTCGTCCAGGTCC AGACCTGATCAGTTATCTACCTGAAGGCATTTTGTTCACTATCTTGTCTCGACTTCCAATTAGAGAAGTTGTTCGAACTA GTTTGTTATCTACTAAATGGATTGATCTATGGAAATCCATCACCAAAGTATATATTGATGACCTTGCATTCCATAACAAA GTGACAATAAACAAGGAAGACATGGCTAAATTTGTGAACTTTGTGACTGAAGTACTTCTTCACCTCAACAATTCAACAAT TGAGGACTTCTCTCTCATGCTATCCAGCCAACAATATGATCCATATGTGACTACTTCATGGATATCATGTGCATTGAAAA AGCAAGTTAAAAAACTTCACATTCAATTTGCAGATCATGCCTCCATCTCATTATGCTCCCCATCCAACTACAATTTTCTT TTGGAATTAGTGCTTGACATGGGTTGGACCATTGAAATTCCTTCCATTTACTCTCTTCAGTTTTTGCAAGTGCTCAGACT TCATAAGGTTAGAATACTCAAAACTCATAATAAAGATTCCAATGATATAGTTCTGAACTTTCCATCACTCAAAGTGTTTG AAGCAAGACAATGTGTATGGTCCAACATCATTCTACAAGCACCAATGTTGGAAAGTTTTTCCTTTATGATATTAGACAAT TGTCTATCGCCTACTGAATTGAAGAAACTACATGGTTCTTATTTCAAGATTTATGCTTCTCCTTTGGCATTCTCATACCA TGGTCATCTACTGCATGATCTCATTCTATTAGACCCTCCATCTTCTGTCAAAGCTTCCACTGTGGAACTCTTTTTTGATG AATGTATTGAGGAGAGGATTCAAAAAACCAGAATCGGGTTGGAAATGCTTCTAAGTCATTTCCATGAAGCTGAAAGCCTA AAATTGAAGCTTAACAATTTCATTCAAGGGCCAAATGATCATTATTTTGCGAATCCACCTATATTCGAAAGGTTGGTTTA TTTGGAAGTGGAAAGAGTTGGAGCTGATACATTGTTTAATCTACTCAACAATGCAAAATATCTCAGGACTTTAGTGCTGA AAAATTCAACATTTTCTTTTAAGGAAAATATCTTGACTTCTGCAGCAACACCTGAATGTTTTAATTCTAGCCTTAAGGAT GTTCAATTCAAACAGTTTAGAGGGGTTTTTTGTGAATTTACTTTGGCAAAGTTTGTGCTAAAGAATGCAACGATCTTGGA GAAGATGACTATCTTCCCACATTCGCTACTACGAGATTCAGATGCGGGGTTTGAAGCAGTTAAATGGAAGATACTATCAT ATCCAAGAAAATCTAGTAGTGTTTCAATTGAATTTCCTATCCAATTTTAA
Protein sequence (LotjaGi3g1v0035800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRRGTTMDSNIANDKFLSLLNVRPGPDLISYLPEGILFTILSRLPIREVVRTSLLSTKWIDLWKSITKVYIDDLAFHNK VTINKEDMAKFVNFVTEVLLHLNNSTIEDFSLMLSSQQYDPYVTTSWISCALKKQVKKLHIQFADHASISLCSPSNYNFL LELVLDMGWTIEIPSIYSLQFLQVLRLHKVRILKTHNKDSNDIVLNFPSLKVFEARQCVWSNIILQAPMLESFSFMILDN CLSPTELKKLHGSYFKIYASPLAFSYHGHLLHDLILLDPPSSVKASTVELFFDECIEERIQKTRIGLEMLLSHFHEAESL KLKLNNFIQGPNDHYFANPPIFERLVYLEVERVGADTLFNLLNNAKYLRTLVLKNSTFSFKENILTSAATPECFNSSLKD VQFKQFRGVFCEFTLAKFVLKNATILEKMTIFPHSLLRDSDAGFEAVKWKILSYPRKSSSVSIEFPIQF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 462 | 443 | 2.4E-73 | – | |
| PANTHER | 20 | 462 | 443 | 2.4E-73 | – | |
| SUPERFAMILY | 26 | 69 | 44 | 6.28E-10 | ||
| ProSiteProfiles | 27 | 74 | 48 | 9.762 | ||
| Gene3D | 29 | 263 | 235 | 5.4E-9 | ||
| Pfam | 30 | 67 | 38 | 9.9E-6 | ||
| SMART | 33 | 74 | 42 | 0.006 | ||
| Pfam | 391 | 431 | 41 | 9.1E-14 | ||
| SMART | 392 | 466 | 75 | 8.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0035800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…