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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0036100 |
| Transcript ID | LotjaGi3g1v0036100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT5G45190.1 Cyclin family protein; Swiss-Prot: sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5; TrEMBL-Plants: tr|V7BT73|V7BT73_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0036100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3891299..3898001) extracted from Lotus japonicus Gifu genome v1.2.
AAATTCCAAAAAGAGATATGAAAAGAAAATATCAGCATTAGGGTTGGTCGGGTCGCTGGTCCTTTTCTTCACCCTCCACT CGCTCTCTCTCTCTCTCTCATTCATTCTTGCTTCGATTCCAGAACTTGCAGCACGAAAATTCGCATCGCTCTCATCTTCA TCTTCACTCACTGAAAGGTTAGGGTTTTTGATTCATGTCATTGTCCTTCAACTTTGTTCTACTACGTCATTCGTAGAATG GGTTTTCGGTTTCTGTTGATTTTGTATTCGTTTGTGGTGCCCATGCATCGAGTAATTGAATTCAAAAGGGTTTCTTTATG CCTCTGTTGCCTGTAATTTTCACCATGATCAGAGTTTTTTTGATCCTCTTGAGTTGTAGTCATGTTATGAACAATTGGGT ATTCATAGAGCCCTTGCTTTTCTCATTTATATGATCAGTTGTGTTTACTTGATTTTCTGAAGTTAGTTTTTTTTGTTCCA TGTTGGAATGAATTGATTGATATGATGAGTAGTAAATTGAATTATAGTTTGGGGTTGGAATTGTATTGAAATTCCATGTC TATAAGTTTCTTAGAAGGTGTTTGATGTCAATGTATGGAGGGGTTTCGGCTTTCTGTCATGACCCGCCATCCGCAATCAA ACACTGATGATGAGATGATTTCACTGTTGGGGCTATTAAGGAAAATATATTATTAACTTGTTTGATGATGTGATTACAAG AGACTAGATTTTTACTAATTATGTATATGATTCCCACCACACTGAAATCTAATTTAGATAGAGTTAGAGAAAGCTGAATC ATAAAAAACTTTTTTTCCTTCTTTTTCAGTTATGTGGTAAAGGAGAGAACAATAGACAAATAAGGTGAATTTAGTAACTT GAGTTAAAAATATCTCTTATTTGGGTGGCTTATGCTTGTTGAATATGACCTTGTATTACTTAGTTAATTATAATGATTAA TACCTTAATGACTCTAAATTCCATACTAGATAGTATATTTAATACGTGTGTATTGTGAAACTTCATGTTCGGAGATGCTT GTGGCAACTAATTATTTCTCTTTAGACAACAACACTGATGTGAACAATGCACAAACTTACCTGCCTCGTGTTGAAGTTCA ACTTTTTATTAGAAGAGTGAGGGCGACAAAGATTGAGCTCTAGGTCATTTGGTCATAGAAGCTCTGATGCCATGTTATGA ACTAACTAACCCAAAAATTTAAGATGTTGGGTGTAGACACATGAATATTATATCTCTAACACATGTGCTTTGGCTTATCA CCATGAAGTTCATTTACAAATATGAAAGATTTTATATAGAAAGTCATGTTTCTTGCGGGGTTGATGTTATGAACAAAACT AGTCATTTGTGTTCCAATTTTTATGTGAATTTGACTTCTAGAACAATTTCTACCTTTTCATACTGTTCTTTCATTTGTAA AACCTTTCGACTTACTTTGGACCGGGAACTTAGTTCTAGCATAGGATGTATCTGATTCTGATGTGAACACTTTTTGATTT AGATGTATAAAATGTTTTTTATTTTATGACAATAGAGAATATGACCAGTGCATATGGAGGCAATGTTTTTTAGAAGTGTT TGATGGACACTGATTTGCCGGTACCTATACCTATCATAATTTGACATAAAAGTGTGTGGATAATTACTAAGGGCATTGAT GACAATGGTATAAAAGGAGAGGGCTTGGGTGCCCACTTTCAGATAGGGCATATTGGCTATCCTAGTATGAGTCAAATCTG AGATTGGCATTTATGTTAAGAAAATTCTTTGGAGTCATTGTTATTTATCTATTAAAAAAGGTAAACAAATTATGTGATGA TTAACATAATTTGCTAGCTTGCTGATGTGTTAAATCAGTGAGGACTATATTTTGTTTATTTTGCATATTAGCACATGACC CCTTTTGTTTATCATAAGTGTATTTGTATTGATTTACAGGGAACTATTGGATATCAGTGACTTGTTCTTATGTTGTGACA GTCATAGGCATCTATGTCAAACTAAACTAAATTGACTCCACTCTGATCATCATGGCTGGATTGTTGCTTGGTGATATCTC TCATCATGGATCATATCAAAGTGGTTCACAAGGAGGCTCTCAGGACAATCAAGAGTATGGTTCTCGTTGGTACTTTTCTA GGAAGGAGATCGAAGAAAATTCACCTTCCAAACAAGACGGTGTAGATTTGAAGAAAGAAGCTTACCTACGCAAATCATAC TGTACATTTCTACAAGACCTAGGCATGAGACTTAAAGTGTGAGTTTCTAAGCCTTTTTGTAACATAATTTTTTGTTGCGT TAGTTCACTATCTAAATTGTCTAGGTTTTCGTGTTTGTGATTTTTCAGTGTTAGACTTCATTTATTTTAAGTTTTCTTGT TTTGTTCAACTGATATAAATGTGTCTGGTGGAAAGCTATTTAAATTCAGAAGGTTTGAATTTGTAGCATTGATTTTTTTA CTGTGTATGAGCTGTGTAGCTCTTCAGCATCATGTTTATATATTTATATCGCTGGAAGTATATCGGGAATTTTAATGATT ATCTCTGATCATACATGGGCAATAGCTAATATATCATAATGTTTATATTGATTTAATTGTGGTGCAGACCTCAGGTAACT ATTGCCACAGCAATAATTTTTTGTCATCGGTTCTTTCTTCGGCAATCCCATGCAAAGAATGACAGGAGGGTGAGTCTGTT TTTTGTAATGTCAAGTTGCATATTGTCATTCTCTATGTGGTCAATTTATCCTTGTGTCTGACTGTGCCTAGAGGGATATA AATTGCATATTATCTTTAATAGATAGTCGTACTCTTCTCTGAACCATGTATAAATTTCTGCTTTATATGAATTTCTATAA GTAGTGATAGCAAACTATTTATTGGCTGGCTTAATATCATGTGTTCATGCTTCAGCAGAGTTGTGGATATTGTATTTACA TCCTCTGGTTTAGTGCCATGCTTGAATAATGAATTGGATTTGGGTCCATATCTTTTTAGGGAAAATTGTAGCTCTTTAAA TTTTGCAAATTAAGGGCTCGTTTGTAGCTATTATATTTTTCTTGAAGTGTTTGGGTATGTTTTGATGAAAAGCAGGTTTT GAAAAAAATACAAAGACGGATTATTTGTTGAAGCTATTTCTAGTAGTTTTTGAAAAAAGAAATTCTAGAAGAGAGATAAT CAGAATCCCCTTTTTTAGGTAACTATCTCATTTAGTTATGCAATCTTATCCCTATTTTTGAATCCAATCATAATTTTTTT TATAGCCTTTAAAGTAATTTTATATGAAAAAACTACATTTCTACAACCAAATGAGTTAAAATCATTTCTTAAAAAAACAC TTTTTTTATTTGTAAACAAATATCAAATAACTTGTTCTTTAATAAAGTCTCTTAAAATAAAAACATTCTCACACAACCCT TTTTTTGGACAAATTTTTTCATACAACCTTATAACCACTTCTATTTAAAGCATACACAAATGGGCCCTAAGCCCAAATTT TCCTTCAGCATTTGTTTGAGTTCATATGAAAATCTACCCCTATGTCTTTTCGTGCATTGTTTATAAATTTATCTTTTATC GACTATGGTTTTATGGATGTTGCATAATACATATGATAGAATGTTAAATTTGACACATGTTCTGCAGATCATTGCTACCG TGTGCATGTTTCTTGCTGGGAAGGTTGAAGAAACTCCTCGCCCTCTAAAAGATGTTATTCTTGTTTCATATGAAATTATA CACAAGAAGGATCCTGCAGCTGTTCAGAGAATCAAACAGAAGGTATAGCATATGCCCCTAACTAACTTGTGCTTTTCTAT GAAGCAATTTTGGCTCCCATCATTGAACTACCTGTTGATAATTATTTTGTTTACATTTAATTGATTTAAACTGTCTTCAT GGTTTTTTTATCTTTCACCCAACTTTAGTTCCAGTTGAAATGTTACATTCATCACAGTTGACGGTACATTTTAGTCACTT TTGCTAGAAGACCGTGCCTGTAACAGTTTTGATGTGCAAGTTCATTCTAAATTAAACTATTTGAACTGATTTTTTTTAAT ATTTTTTATGTATTTAACCTTCTGGGAATTTATTTCAAAATCAAATTTCATTTGAATTTTTCATTGAGTTCCCAGTTTTC TTTTCTAATATGATTTTTTCTCATACAAATATCTTTACTTGAAAATGTGGCACAGGATGTGTATGAACAGCAGAAAGAAT TAATTTTACTTGGAGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCTTACAAACCTCTTGTT GAGGCAATTAAGAAATTCAAAGTTGCTCAAAATGCTCTTGCTCAAGTTGCATGGAATTTTGTTAATGATGGGTATGAAGA TTGCTCCATTTCTGTTTTGGCCAATGGCCTTTGATTTTACTTTGCTGACATGAGGATGTGGTATGCAGGCTTCGGACATC TCTTTGCCTGCAGTTTAAACCCCATCACATTGCAGCTGGAGCCATATTCCTTGCTGCGAAGTTCCTCAAGGTGAAGCTCC CATCAGACGGGGAAAAGGTTTGGTGGCAAGAGTTTGATGTCACTCCCCGCCAGTTGGAGGGTTGGTGTCTTCTTTTTTAG TACTATATAAAGAAATGAGAAACAAAAGTACTATCTCTTCGTCAAATATCTATTTCCCCTGCACCTACTCTTATTGCTTA TTTCTTTTTTCTTAATGTGTGGCGGTGTCCTACAAAGAATCTAATTATTGAACTTTTGAGGAGAATACCTTTATTATCAT CTGGATAGACCCATCACTGTATTTATACTTTCTGCAGAAGTTAGTAATCAAATGCTGGAGCTATATGAACAAAACCGAAT GGCACAGTCAAATGATGTTGAAGGAACCACAGGAGGTGGCAACAGGGCAACTCCAAAAGCTCCAACTAGCAATGATGAAG CTGCATCCACAAACAGAAATTTGCATATCGGAGGTCCAAGTTCAACACTTGAAACATCAAAACCTGCAACATCTAAAAAT GTTTTTGTGTCATCTGCTAATCATGTGGGACGCCCTGTATCGAATCATGGTGTAAGTGGAAGCACCGAAGTGAAACACCC GGTGGAAGATGATGTCAAAGGCAATCTACATCCTAAACAGGAACCTTCAGCATATGAGGAAAACATGCAGGAAGCTCAAG ACATGGTGAGATCTCGATCAGGTTATGCCAAAGGTAATCAACATCCTAAGCAGGAACCTTCAACATATGAGGAAAAAATG CAGGAAGCTCAAGACATGGTGAGATCTCGATCAGGTTATGGCAAAGAGCAAGAGAGCAACGTTGGGAGAAGCAACATTAA GGAGGAAGATGTTGAATTGAATGATAAACATAGCAGCAAGAACCTAAATCACAGAGATGCTACATTTGCCTCGCCGAATC TGGAAGGCATTAAAAAAATCGATAGGGACAAGGTAAAAGCTGCATTAGAGAAACGAAAGAAAGCAACTGGTAATATTTCT AAGAAAACTGAGTTAGTGGATGATGAGGATCTGATTGAGAGGGTCAGGGAACTCGAAGATGGAATTGAATTGGCTGCTCA GAGTGAGAAGAATAAACAGGATGGACGGAAAAGCTTGTCTAAGTCCTTAGACAGATCAGCTTTTGAGAATATGCAGCATG GAAAACATCAAGATCATTCAGAAGAGCATCTCCATTTGGTGAAGCCATCACATGAAGCAGATTTAAGTGCTGTAGAAGAA GGGGAGGTGTCTGCACTTGATGACATTGACCTGGGACCCAAGTCAAGCAACCAGAAGAGAAAAGTAGAGAGCTCCCCTGA TAATTTTGTGGAGGGGAAAAAGCGGCATAATTATGGTTCCGGATCTACCCACCATAATCGCATTGATTATATAGAAGATC GAAACAAGGTCAACCGGCTGGGACATGCTGAGAGGGACAGCAAAAGGCATATACAGGAAAACCAAGTTTGATGCAGTGTT TTAGTGTGTTTAATTATGTGCATTTACCATCTTGAATCGCGTACTTAAAGCTACTATTTGTAGCTTCAACTTTACGTCGC TTGCGTGATTGCACTAGTTTCCAAATACACTGTTAGTGTGGCCGAGCCTGTCTCATTGTTTTCAAGTCTTGTCTGGGTAT ACACATGCTTCTTGGAAAAGATCCTGGAATGCTCTCAACTCTAATAATCCAACTGCCTCTGCTGCCCACCAAATCCCCCA GGGCATGGGAATTTAACTAGATAGAAGGTAATTTGAACTAATTTAGTTCGGTGAAGGATCAATTCCATTTCATGGATACA TGGGGAAACTTGTGTTGTTGAAAGTGAGATTTTGTTTAAATTAAGGATGGACTTATAATAGAACGTCTATATTCCTGTGG GATCATAGATCTATTATTTATATCATTATTGTCCATGTGAAATCATAGTTAACTAGTTGTGATGATAATGATGATTTTGA TGATGGTGATGATGATGAGAAACACTAAGTGGTTAAAAGAGGGAAGCAAATTGCTCGCGTTGTATCTTTTCAGAAATGAG ATGTTGAGTGAATAATGCACTTCACAGATTTTTTATTTTCTTGTTGATAAAGTGAAGCTTTCCATTATCAGGCCAAACAG CACAAATGAGCTAAACAAATGGGCTCTTAGCCTAATCTGGTAATATGCTAGACCTATTAAAAG
CDS sequence (LotjaGi3g1v0036100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGATTGTTGCTTGGTGATATCTCTCATCATGGATCATATCAAAGTGGTTCACAAGGAGGCTCTCAGGACAATCA AGAGTATGGTTCTCGTTGGTACTTTTCTAGGAAGGAGATCGAAGAAAATTCACCTTCCAAACAAGACGGTGTAGATTTGA AGAAAGAAGCTTACCTACGCAAATCATACTGTACATTTCTACAAGACCTAGGCATGAGACTTAAAGTACCTCAGGTAACT ATTGCCACAGCAATAATTTTTTGTCATCGGTTCTTTCTTCGGCAATCCCATGCAAAGAATGACAGGAGGATCATTGCTAC CGTGTGCATGTTTCTTGCTGGGAAGGTTGAAGAAACTCCTCGCCCTCTAAAAGATGTTATTCTTGTTTCATATGAAATTA TACACAAGAAGGATCCTGCAGCTGTTCAGAGAATCAAACAGAAGGATGTGTATGAACAGCAGAAAGAATTAATTTTACTT GGAGAGAGGGTTGTTCTTGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCTTACAAACCTCTTGTTGAGGCAATTAA GAAATTCAAAGTTGCTCAAAATGCTCTTGCTCAAGTTGCATGGAATTTTGTTAATGATGGGCTTCGGACATCTCTTTGCC TGCAGTTTAAACCCCATCACATTGCAGCTGGAGCCATATTCCTTGCTGCGAAGTTCCTCAAGGTGAAGCTCCCATCAGAC GGGGAAAAGGTTTGGTGGCAAGAGTTTGATGTCACTCCCCGCCAGTTGGAGGAAGTTAGTAATCAAATGCTGGAGCTATA TGAACAAAACCGAATGGCACAGTCAAATGATGTTGAAGGAACCACAGGAGGTGGCAACAGGGCAACTCCAAAAGCTCCAA CTAGCAATGATGAAGCTGCATCCACAAACAGAAATTTGCATATCGGAGGTCCAAGTTCAACACTTGAAACATCAAAACCT GCAACATCTAAAAATGTTTTTGTGTCATCTGCTAATCATGTGGGACGCCCTGTATCGAATCATGGTGTAAGTGGAAGCAC CGAAGTGAAACACCCGGTGGAAGATGATGTCAAAGGCAATCTACATCCTAAACAGGAACCTTCAGCATATGAGGAAAACA TGCAGGAAGCTCAAGACATGGTGAGATCTCGATCAGGTTATGGCAAAGAGCAAGAGAGCAACGTTGGGAGAAGCAACATT AAGGAGGAAGATGTTGAATTGAATGATAAACATAGCAGCAAGAACCTAAATCACAGAGATGCTACATTTGCCTCGCCGAA TCTGGAAGGCATTAAAAAAATCGATAGGGACAAGGTAAAAGCTGCATTAGAGAAACGAAAGAAAGCAACTGGTAATATTT CTAAGAAAACTGAGTTAGTGGATGATGAGGATCTGATTGAGAGGGTCAGGGAACTCGAAGATGGAATTGAATTGGCTGCT CAGAGTGAGAAGAATAAACAGGATGGACGGAAAAGCTTGTCTAAGTCCTTAGACAGATCAGCTTTTGAGAATATGCAGCA TGGAAAACATCAAGATCATTCAGAAGAGCATCTCCATTTGGTGAAGCCATCACATGAAGCAGATTTAAGTGCTGTAGAAG AAGGGGAGGTGTCTGCACTTGATGACATTGACCTGGGACCCAAGTCAAGCAACCAGAAGAGAAAAGTAGAGAGCTCCCCT GATAATTTTGTGGAGGGGAAAAAGCGGCATAATTATGGTTCCGGATCTACCCACCATAATCGCATTGATTATATAGAAGA TCGAAACAAGGTCAACCGGCTGGGACATGCTGAGAGGGACAGCAAAAGGCATATACAGGAAAACCAAGTTTGA
Protein sequence (LotjaGi3g1v0036100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLLLGDISHHGSYQSGSQGGSQDNQEYGSRWYFSRKEIEENSPSKQDGVDLKKEAYLRKSYCTFLQDLGMRLKVPQVT IATAIIFCHRFFLRQSHAKNDRRIIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKDVYEQQKELILL GERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSD GEKVWWQEFDVTPRQLEEVSNQMLELYEQNRMAQSNDVEGTTGGGNRATPKAPTSNDEAASTNRNLHIGGPSSTLETSKP ATSKNVFVSSANHVGRPVSNHGVSGSTEVKHPVEDDVKGNLHPKQEPSAYEENMQEAQDMVRSRSGYGKEQESNVGRSNI KEEDVELNDKHSSKNLNHRDATFASPNLEGIKKIDRDKVKAALEKRKKATGNISKKTELVDDEDLIERVRELEDGIELAA QSEKNKQDGRKSLSKSLDRSAFENMQHGKHQDHSEEHLHLVKPSHEADLSAVEEGEVSALDDIDLGPKSSNQKRKVESSP DNFVEGKKRHNYGSGSTHHNRIDYIEDRNKVNRLGHAERDSKRHIQENQV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 285 | 285 | 6.8E-236 | ||
| PANTHER | 1 | 285 | 285 | 6.8E-236 | – | |
| Gene3D | 30 | 173 | 144 | 1.9E-50 | – | |
| PIRSF | 31 | 459 | 429 | 1.5E-63 | – | |
| SUPERFAMILY | 31 | 175 | 145 | 1.66E-41 | ||
| Pfam | 34 | 174 | 141 | 4.8E-20 | ||
| CDD | 59 | 130 | 72 | 5.34342E-15 | ||
| SMART | 65 | 167 | 103 | 9.5E-9 | ||
| CDD | 174 | 235 | 62 | 7.14187E-8 | ||
| Gene3D | 175 | 280 | 106 | 2.9E-36 | – | |
| SUPERFAMILY | 176 | 272 | 97 | 6.98E-33 | ||
| SMART | 180 | 265 | 86 | 4.7E-8 | ||
| Coils | 256 | 276 | 21 | - | – | |
| MobiDBLite | 276 | 346 | 71 | - | – | |
| MobiDBLite | 276 | 420 | 145 | - | – | |
| MobiDBLite | 348 | 362 | 15 | - | – | |
| MobiDBLite | 395 | 417 | 23 | - | – | |
| PIRSF | 399 | 609 | 211 | 930.0 | – | |
| PANTHER | 433 | 503 | 71 | 6.8E-236 | – | |
| PANTHER | 433 | 503 | 71 | 6.8E-236 | ||
| MobiDBLite | 525 | 610 | 86 | - | – | |
| MobiDBLite | 547 | 572 | 26 | - | – | |
| MobiDBLite | 580 | 610 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0036100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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