Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0036200 |
| Transcript ID | LotjaGi3g1v0036200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT5G45190.1 Cyclin family protein; Swiss-Prot: sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3; TrEMBL-Plants: tr|A0A1J7FWL8|A0A1J7FWL8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0036200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:3925999..3932503) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTCCTTCTTCTAAACCCTAGCCATTCCCAGCCCTAGTTGCGTTGCTCCTGTGTTCGCTGATACACGTTGCTCCTTC TCTTCTTCTTCCCTCACTCGCTCTTCGATTTCAGCGCGAAAATTGGCATCTCTCTCATTGAAATCTTCTGTTAAGGTAAG GGTTTTTGATTCATGCAATTACCCCTTTACGCTCTTCAACTTCAACCTTGTTCTACTATGATATTTTTCAAATTTTTGAG ATAAACAATCATATTTCTAAACTGGGTTTTCAGCATTTGTTACCCTTTGTGTTGAGGAAAAAAAATTGATGAATGGGAAC TGTTAAGAATTTTTTTGGATGATTAATGGAATTTTAGGGTTCTGGATGCCTTTGTTACATGTATGAACAATTGGGTATTC ATGAAGCACACACTTTGTGTATTTAGATTATCAGGGGTTTGCTTAAGCTTCTGAAGCTAGTTCTTTTGTTCCATGTTGGA GTAAATTGGTTGATGGTGTAGGAGTTATATTCAAATGCCATGTCTTTGTGAGTGACAGAGAAGCGTGTAGATACTTAAGA GGGGCATTGATGGCAATGGTATAAAAGGATAAGATTTGCGTGTACCCACTTTCAGTGAGGGCATGTATTTTATTAATTTC AAAATTGGCTATCCTAGTGTGGTTGGCATCTATGTTAAGAAGAAGGAAAATGCTAGTTGTTACGAACAGTGTACCAAGCG AAACTTCTGAATGTGCGTTGTTAAACTTTTAACTTTTCTCTCTCATACCACTACTCCCAATCATTTATTTGGACAAGTGC TGTGATTGGTAGAAATTTGTTTTCGGCCATTTCGTTTCGTACTAGGTAGTGCTCTAAGAAGATTCTATCTTGGGAGTCAT TGTTATTTATCTAATAAAAAAGGTGGAAAAAAAACATGATTAATAGTTTAATACAGTTTACTGGCTTGCTTATGTTATGT GGTAAATCAGTGAGGATTATATTTTGTTTATTTGCATATTAGCACATTGCCTCTTTTGTTTATCATAATTGTATTTGGTT GACAGGGAACTATTGGATATCAGTGATATGCATCTATCTCAAGTCAAGCTGAACTAAATTGAATCCACTCTGATCATCAT GGCTGGATTGTTGCTTGGTGATACCTCTCATGATGGAACACATCAAAGTGGTTCACAAGGATGCTCTCAGGAGAATGGTT CTCGATGGTACCTTTCTAGGAAAGAGATCGAAGAAAACTCACCTTCCAAACAAGATGGTGTAGATTTGAAGAAAGAAGCT TACCTACGCAAATCATACTGTACATATCTACAAGATTTAGGCATGAGACTTAAAGTGTAAGTTTGTATGCCCTTTTATCC CATCATTTTCTGGTGCATTAGTTCACTATCTAAACTGTCTAGGTCCTTGTTTTTATTATTTTTCAGTGTAAGACTTCATT TGTTGTAAGTTTTCTAGTTTTCTTTATTTGTTCTACTGATATAAATGTGTCTGGTGGAAAACTATTTAAATTTAGAAGGT TTGGCTGTGTAGCATTGATTTTTGTCTCTGTAAGTGCTGAGTAGCACATCAGCAGCAGCAGCAGCAGCAGCAGCATCTTT ATATATTTATGTTGCTGGCAACATATGAGAATTTTTATTATCTCTGATCATATTGAAAGCAGGAATACATTGACAATAGC TTAATATATCATAATGTTTATTCCAATTTAATTGTGATGCAGACCTCAGGTAACTATTGCCTCTGCAATAATCTTTTGTC ATCGGTTCTTTCTTCGGCAATCCCATGCAAAGAATGACAGGAGGGTGAGTCTGTATTTTGTAATGACAACTTGCATATTA TCATTCTGGTTGGGGAAAATTTATCCATGTGTGTGGCTGACTGTGCCTAAAGGGATATAACTTGCAGATTATCATGAATG GATAATTGTTCTCTTCTCTGAACTATGCATAAATCTCTGATTTATATGAATTTCGATAAGTAGTGGTAGCAAATCCATTT GTTGGCTGGTGTAATATCATACGGTATGCTTCAGCAGAATTGTTGACACTGTATTTAGATCCTTCTAGTTCGAGGACCTT AGCTTCTCATAATTGGTTTATACTATATGCCATGCCTGAATCATGAATCAGACTTGGGTCCATATCTTTTTAGAGGAAAT TGCAGCTCTGTGAATTTTGCAAATTAAACCCTAGTTTGCCATGCATGAGTAGACTCTGCCTAGACACGTACATGCAAAAG ACTTGCAAGAACTACTTATAAATTATTGCATGCTGTCTTCATTTTTCTCCAGATCCTATCTTATCAATTGATTTTTTTGA ATAATTACATTTTTTTTTCTCTTTGAATGCATCAATGATAGGTTGCCCAATCACAAGGTTATACCAACCAGAGGAAGAAT AGGAAAAGTGTAGTGGATAATAACCCTGTAGTTAGTTGGGATAGTTTTATAACTGTTGTAAACTGTCAGAGGAAGTTCAT GTCGCTTTAGTTAGAAGTGAGCTGTCGTTTTCAGTAGCTTGTTGAGAATAAATTAGAAGAGATTAGAGGGAGGGTATCAC TTGTATTCAGTAACACACTATTCATTTACACTCAATCTGATCCAGTTCACAATCAATTGGTTATATTCTCTTTTTGTTGA GAATACGACATCCCATAACACTCATAAAACACATGGCTAGCACTCTCTTGGATCGTTATTTATTTATTTGTGGATAAAAT AACAGCACAACTAATACAAATCTTAATCATCAATCCTTGCTAACGGCTTGGAGTGTCCGACCCAAAAATGATAGTGGTTT TCATGATTTCATTATTGTAGTAACTGAAATCAAAATGAAATGTATTAGGTTAGCTTGGGCCCAATAAGACTGTAACAGTC CAACTGTCATACATGATTATCATTCTTATGACAAACTGTATTTGTAGGATTATTATATGCTGGTCATGAACATGCTGTTT TTCTTGTCACTTATTTGTACTACCATGTAAAGCAATTATATGCTACAGTTAGCACTCCTCCTATTTTTTAACAAATAAGT CATGTGGGGTTTTCAGTAAGCCTTCTATTTCTTCTTTTGAGAAAATGTTTATGGATTTCATGCTATTTTTCTCACTCTTT ATGCCTATTTTCCTCTTCTTTTCAGCACTTGTTTGAGTTCATGCAAAAATCCATCCCTATGTCATTGGGTGCATTGTTAT AATTTTTATCTTTTACACGCTATGGTTGTATGGTTGGTGTATAACACATTAAATTTGACATATGATTGATTATTAGTAAC TTGACATTTTTTACAGATCATTGCTACATCGTGCATGTTTCTTGCTGGGAAGGTTGAAGAAACTCCTCGCCCTCTAAAAG ACGTTATTCTTGTTTCATATGAAATTATACACAAGAAGGATCCTGCAGCTGTTCAGAGAATCAAACAGAAGGTATAGCAT ATGCCCCTCACTAACCTGTGCTTTTCTATGAAGCAATTTCTGCTCCCATCATTGAATTACCTGTTGATAAATTTTTTTTT AACATTTAATCGATTTAAATTGTGTTCAAGTTTCGTATCTTTCATCCTACTTTCGTTCTAGTTGAAATGTTATATTTCAC CATGGAACATTTTAGTCACTGTTGCTAGAGGCTGGTGCATGCAACAGTTTTTTTTTTAATTTTATATTTTTATGCGATTT ACCTTCTGGGGATTTATTTAAAAATCAAAATTCATTTGAAATTTTCACTTTGCTCCCCGTTTTCTTTTCTAATATGAATT TTTGTTTTGCAATTTTTTTTTATTTCAAACTGTGGCACAGGAAGTGTATGAACAGCAGAAAGAATTAATTTTACTTGGAG AGAGGGTTGTTCTTGCAACTCTTGGTTTTGATTTTCATGTGCAACATCCTTACAAACCTCTTGTTGAGGCAATAAAGAAA CTCAAAGTTTCTCAAAATGCTCTTGCTCAAGTTGCATGGAATTTTGTTAATGATGGGTATGAAGATTGCTCCATTTCTGC TTTGGCCAATGGCCTTTGATTTTACTTTTCTGACATAAGGATGTGGTATGCAGACTTCGGACATCTCTTTGCCTGCAGTT TAAACCCCAGCACATTGCAGCCGGAGCCATATTCCTTGCTGCAAAGTTCCTCAATGTGAAGCTCGAGAAGCTTTGGTGGC AAGTGTTTGATGTCACACTCACTGCCCACCAGTTGGAGGGTTGGTGTCTTCTTTTTTAGTACTATATAAAGAAATGAGAA ACAAAAGTACTATCTCTTCGTCATACATCTATTTCCTCTGCATCTGTTCTTATTGCTTAGTTCTTTTTCTGAATGTGTGC TGATATCTTACGAAGAATCTAATTGTTGAACTTTTGTGGAGTATAGGTATTAGGTAATAGTCAACATCATATTATGTATA CCTTTATTATTATCTGGACCTGGACTGGAAAGACCCATCACTGTATCTATATTTTCTGCAGAAGTTAGTAATCAAATGCT GGAGCTATATGAACAAAATCAAATAGCGCCATCAAATGATGTTGAAGGAACTGCAGGAGGTGGCAACAGGGCAACGCCAA AAGCATCAACTAGCAATGATGAAGCTGCAACCACAAACAACAATTTGTATATCCGAGGTCCAAGTCCAAGACTTGAAGCA TCAAAACTCGCAATATCCAAAAATGTTGTATCATCTGCAAATCATGTTGGCCCTGTATCAAATCACGGCACAAATGGAAG CACAGAAATGATACACTTGGTGGAAGGTGATGCCAAGGGAAATCAACATCCTGAGCAGGAACCTCCACCACATAAGGAAA ACTTGCAGGAAGCTCAAGACACGGTGAGATCTCGATCAGGTTATAGTGAGGAGCCTGAAATCAACATTGGGAGAAGCAAC ATGAAGGAAGATGTTGAATTGAATGATAAACATAGCAGCAAGAACCTAAACCATAGAGATGGTACATTTGCCCCGCCGAG TCTTGAAGCCATTAAAAAAATCGATAGGGACAAGGTAAAAGCTGCATTAGAGAAACGAAAGAAAGCAGTTGGTAATATCA CTAAGAAAACGGAGCTAATGGATGATGAGGATCTGTTTGAGAGGGTTAGGGAACTCGAAGATGGAATTGAATTGGCTGCT CAGAGTGAGAAGAATAAACAGGATGATGAGGATCTGATTGAGAGGGTTAGGGAACTCGAAGATGGAATTGAATTGGCTGC TCAGAGTGAGAAGAATAAACAGGACGGACAGAAAAGCTTGTCTAAGCCCGTAGACAGATCAGCTTTTGAGAATATGCAGC AGGGAAAACATCAAGATCATTCAGAAGAGCATCTCCATTTGGTGAAGCCATCACATGAAACAGATTTAAGTGCTGTAGAA GAAGGGGAGGTGTCTGCACTTGATGACATTGACCTGGGACGCAAGTCAAGCAACCACAAGAGGAAAGCAGAGAGCTCCCC TGATAAATTTGCGGAGGGGAAAAAGCGGCATAATTATAGTTTTGGATCTACCCACCATAATCGCATTGATTATATAGAAG ATCAAAACAATGTCAACCTGCTGGGACATGCTGAGAGGGACAGCAAAAGGCCTGTACAGGAAAACCATATTTGATGCAGT GTTTCATTGTTTGTTTTTTTGGTTCTGTGGATTTACCATGTAGAATTGCGCTTTTGAAAGCTACTATTTGTAGCTTCAAC TTTAGTGACTTGCGCGACCACTGTGTTTCCAAATACACTGTTAGTGTGGCTGAGACTGACTCAGATATTGTTTTCAAGTC TTGTCTGGACATACACATGCTTCTCAGAAAAGATCCTGGAATGCTCTCAACTCTAATAATCCAACTTCCTTAGCTGCCAC CAAATCCCCCTGGGCATGAGAGTTTGACTAGATAGAAGGTAATTTGAACTAATTTAGTTCGGTTAGTAGGATCAGTTCCA TTTCATGGATATATGTGAATACTAGTGTCGTGGAAAGTGATCAGGTTTTGGTTAAATTATGGATGGACTTATAATAGAAG GTCATTCTAGAGTTCATTGGTCTTGAAGCTTGAAAATTCAACTTTTTATTAGAATGATGATGGAAACAATGATCGAACTC TCGATCACTAGTCATAAAGGTTTTGATACTATGTAATGAACAATTGTTCCAAAAGCTTATGTCATGAGTGCAGATACATG AGATGTTTTGTATTATATTTTTTTAACAAGAGCAATAGGTGGATTCCTTGCTCATACCATCATTGTCATTTGTCAAGTGC GAGTAGGAGAGCAACACTACCAGAAAGGCAATTTGAGTGTTGTTTCGTCGAGCTCCTACCTTTACATGGTCACCATTGAG CTCATTTCACCCCTAGTATTTCCTTTGACTTCTTTGTTGAGTAGGTTGTCGAAGATGCGACCATCATGCATGATGAAGTG AGATGAGATTTTTTCTTCATTACTGTTCCTTTTAAAAAAAAATTGTCAGTCAAATTTTGTTTTTTGGACACTCGTGTCAA CTCACTTATTAATTTTTCACCCGCT
CDS sequence (LotjaGi3g1v0036200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGATTGTTGCTTGGTGATACCTCTCATGATGGAACACATCAAAGTGGTTCACAAGGATGCTCTCAGGAGAATGG TTCTCGATGGTACCTTTCTAGGAAAGAGATCGAAGAAAACTCACCTTCCAAACAAGATGGTGTAGATTTGAAGAAAGAAG CTTACCTACGCAAATCATACTGTACATATCTACAAGATTTAGGCATGAGACTTAAAGTACCTCAGGTAACTATTGCCTCT GCAATAATCTTTTGTCATCGGTTCTTTCTTCGGCAATCCCATGCAAAGAATGACAGGAGGATCATTGCTACATCGTGCAT GTTTCTTGCTGGGAAGGTTGAAGAAACTCCTCGCCCTCTAAAAGACGTTATTCTTGTTTCATATGAAATTATACACAAGA AGGATCCTGCAGCTGTTCAGAGAATCAAACAGAAGGAAGTGTATGAACAGCAGAAAGAATTAATTTTACTTGGAGAGAGG GTTGTTCTTGCAACTCTTGGTTTTGATTTTCATGTGCAACATCCTTACAAACCTCTTGTTGAGGCAATAAAGAAACTCAA AGTTTCTCAAAATGCTCTTGCTCAAGTTGCATGGAATTTTGTTAATGATGGACTTCGGACATCTCTTTGCCTGCAGTTTA AACCCCAGCACATTGCAGCCGGAGCCATATTCCTTGCTGCAAAGTTCCTCAATGTGAAGCTCGAGAAGCTTTGGTGGCAA GTGTTTGATGTCACACTCACTGCCCACCAGTTGGAGGAAGTTAGTAATCAAATGCTGGAGCTATATGAACAAAATCAAAT AGCGCCATCAAATGATGTTGAAGGAACTGCAGGAGGTGGCAACAGGGCAACGCCAAAAGCATCAACTAGCAATGATGAAG CTGCAACCACAAACAACAATTTGTATATCCGAGGTCCAAGTCCAAGACTTGAAGCATCAAAACTCGCAATATCCAAAAAT GTTGTATCATCTGCAAATCATGTTGGCCCTGTATCAAATCACGGCACAAATGGAAGCACAGAAATGATACACTTGGTGGA AGGTGATGCCAAGGGAAATCAACATCCTGAGCAGGAACCTCCACCACATAAGGAAAACTTGCAGGAAGCTCAAGACACGG TGAGATCTCGATCAGGTTATAGTGAGGAGCCTGAAATCAACATTGGGAGAAGCAACATGAAGGAAGATGTTGAATTGAAT GATAAACATAGCAGCAAGAACCTAAACCATAGAGATGGTACATTTGCCCCGCCGAGTCTTGAAGCCATTAAAAAAATCGA TAGGGACAAGGTAAAAGCTGCATTAGAGAAACGAAAGAAAGCAGTTGGTAATATCACTAAGAAAACGGAGCTAATGGATG ATGAGGATCTGTTTGAGAGGGTTAGGGAACTCGAAGATGGAATTGAATTGGCTGCTCAGAGTGAGAAGAATAAACAGGAT GATGAGGATCTGATTGAGAGGGTTAGGGAACTCGAAGATGGAATTGAATTGGCTGCTCAGAGTGAGAAGAATAAACAGGA CGGACAGAAAAGCTTGTCTAAGCCCGTAGACAGATCAGCTTTTGAGAATATGCAGCAGGGAAAACATCAAGATCATTCAG AAGAGCATCTCCATTTGGTGAAGCCATCACATGAAACAGATTTAAGTGCTGTAGAAGAAGGGGAGGTGTCTGCACTTGAT GACATTGACCTGGGACGCAAGTCAAGCAACCACAAGAGGAAAGCAGAGAGCTCCCCTGATAAATTTGCGGAGGGGAAAAA GCGGCATAATTATAGTTTTGGATCTACCCACCATAATCGCATTGATTATATAGAAGATCAAAACAATGTCAACCTGCTGG GACATGCTGAGAGGGACAGCAAAAGGCCTGTACAGGAAAACCATATTTGA
Protein sequence (LotjaGi3g1v0036200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLLLGDTSHDGTHQSGSQGCSQENGSRWYLSRKEIEENSPSKQDGVDLKKEAYLRKSYCTYLQDLGMRLKVPQVTIAS AIIFCHRFFLRQSHAKNDRRIIATSCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAVQRIKQKEVYEQQKELILLGER VVLATLGFDFHVQHPYKPLVEAIKKLKVSQNALAQVAWNFVNDGLRTSLCLQFKPQHIAAGAIFLAAKFLNVKLEKLWWQ VFDVTLTAHQLEEVSNQMLELYEQNQIAPSNDVEGTAGGGNRATPKASTSNDEAATTNNNLYIRGPSPRLEASKLAISKN VVSSANHVGPVSNHGTNGSTEMIHLVEGDAKGNQHPEQEPPPHKENLQEAQDTVRSRSGYSEEPEINIGRSNMKEDVELN DKHSSKNLNHRDGTFAPPSLEAIKKIDRDKVKAALEKRKKAVGNITKKTELMDDEDLFERVRELEDGIELAAQSEKNKQD DEDLIERVRELEDGIELAAQSEKNKQDGQKSLSKPVDRSAFENMQQGKHQDHSEEHLHLVKPSHETDLSAVEEGEVSALD DIDLGRKSSNHKRKAESSPDKFAEGKKRHNYSFGSTHHNRIDYIEDQNNVNLLGHAERDSKRPVQENHI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 280 | 280 | 2.1E-203 | ||
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 1 | 280 | 280 | 2.1E-203 | – | |
| MobiDBLite | 10 | 26 | 17 | - | – | |
| Gene3D | 19 | 170 | 152 | 4.9E-48 | – | |
| SUPERFAMILY | 26 | 172 | 147 | 3.97E-40 | ||
| PIRSF | 26 | 450 | 425 | 6.5E-63 | – | |
| Pfam | 31 | 169 | 139 | 2.0E-18 | ||
| CDD | 56 | 127 | 72 | 3.09787E-14 | ||
| SMART | 62 | 164 | 103 | 1.6E-7 | ||
| CDD | 171 | 262 | 92 | 9.66418E-10 | ||
| Gene3D | 172 | 274 | 103 | 1.4E-33 | – | |
| SUPERFAMILY | 173 | 266 | 94 | 3.23E-30 | ||
| SMART | 177 | 260 | 84 | 4.8E-10 | ||
| Pfam | 189 | 265 | 77 | 4.0E-5 | ||
| MobiDBLite | 270 | 306 | 37 | - | – | |
| MobiDBLite | 282 | 304 | 23 | - | – | |
| MobiDBLite | 351 | 416 | 66 | - | – | |
| MobiDBLite | 351 | 379 | 29 | - | – | |
| MobiDBLite | 388 | 409 | 22 | - | – | |
| PIRSF | 418 | 628 | 211 | 590.0 | – | |
| Coils | 471 | 491 | 21 | - | – | |
| MobiDBLite | 523 | 595 | 73 | - | – | |
| MobiDBLite | 524 | 551 | 28 | - | – | |
| MobiDBLite | 559 | 591 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0036200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…